메뉴 건너뛰기




Volumn 387, Issue 2, 2005, Pages 437-445

Catalytic mechanism of α-retaining glucosyl transfer by Corynebacterium callunae starch phosphorylase: The role of histidine-334 examined through kinetic characterization of site-directed mutants

Author keywords

Corynebacterium callunae; Glycogen phosphorylase; Glycosyltransferase; Maltodextrin; Retaining mechanism; Site directed mutagenesis

Indexed keywords

AMINO ACIDS; BACTERIA; ENZYMES; FLUORESCENCE; MUTAGENESIS; PHOSPHATES; QUENCHING; STARCH;

EID: 17644368570     PISSN: 02646021     EISSN: None     Source Type: Journal    
DOI: 10.1042/BJ20041593     Document Type: Article
Times cited : (25)

References (42)
  • 1
    • 0037466315 scopus 로고    scopus 로고
    • An evolving hierarchical family classification for glycosyltransferases
    • Coutinho, P. M., Deleury, E., Davies, G. J. and Henrissat, B. (2003) An evolving hierarchical family classification for glycosyltransferases. J. Mol. Biol. 328, 307-317
    • (2003) J. Mol. Biol. , vol.328 , pp. 307-317
    • Coutinho, P.M.1    Deleury, E.2    Davies, G.J.3    Henrissat, B.4
  • 2
    • 0030843984 scopus 로고    scopus 로고
    • A classification of nucleotide-diphospho-sugarglycosyitransferases based on amino acid sequence similarities
    • Campbell, J. A., Davies, G. J., Bulone, V. and Henrissat, B. (1997) A classification of nucleotide-diphospho-sugarglycosyitransferases based on amino acid sequence similarities, Biochem. J. 326, 929-939
    • (1997) Biochem. J. , vol.326 , pp. 929-939
    • Campbell, J.A.1    Davies, G.J.2    Bulone, V.3    Henrissat, B.4
  • 3
    • 0031015902 scopus 로고    scopus 로고
    • Nomenclature for sugar-binding subsites in glycosyl hydrolases
    • Davies, G. J., Wilson, K. S, and Henrissat, B. (1997) Nomenclature for sugar-binding subsites in glycosyl hydrolases. Biochem. J. 321, 557-559
    • (1997) Biochem. J. , vol.321 , pp. 557-559
    • Davies, G.J.1    Wilson, K.S.2    Henrissat, B.3
  • 4
    • 0025017865 scopus 로고
    • The role of pyridoxal 5′-phosphate in glycogen phosphorylase catalysis
    • Palm, D., Klein, H. W., Schinzel, R., Buehner, M. and Helmreich, E. J. (1990) The role of pyridoxal 5′-phosphate in glycogen phosphorylase catalysis. Biochemistry 29, 1099-1107
    • (1990) Biochemistry , vol.29 , pp. 1099-1107
    • Palm, D.1    Klein, H.W.2    Schinzel, R.3    Buehner, M.4    Helmreich, E.J.5
  • 5
    • 0027018077 scopus 로고
    • Catalytic mechanism of glycogen phosphorylase
    • Johnson, L. N., Hu, S. H. and Barford, D. (1992) Catalytic mechanism of glycogen phosphorylase. Faraday Discuss. 93, 131-142
    • (1992) Faraday Discuss , vol.93 , pp. 131-142
    • Johnson, L.N.1    Hu, S.H.2    Barford, D.3
  • 6
    • 0033609134 scopus 로고    scopus 로고
    • The crystal structure of the Escherichia coli maltodextrin phosphorylase-acarbose complex
    • O'Reilly, M., Watson, K. A. and Johnson, L. N. (1999) The crystal structure of the Escherichia coli maltodextrin phosphorylase-acarbose complex. Biochemistry 38, 5337-5345
    • (1999) Biochemistry , vol.38 , pp. 5337-5345
    • O'Reilly, M.1    Watson, K.A.2    Johnson, L.N.3
  • 7
    • 77956920699 scopus 로고
    • α-glucan phosphorylases - Chemical and physical basis of catalysis and regulation
    • (Boyer, P D., ed.), Academic Press, New York
    • Graves, D. J. and Wang, J. H. (1972) α-Glucan phosphorylases - chemical and physical basis of catalysis and regulation. In The Enzymes, vol. 7 (Boyer, P D., ed.), pp. 435-483, Academic Press, New York
    • (1972) The Enzymes , vol.7 , pp. 435-483
    • Graves, D.J.1    Wang, J.H.2
  • 8
    • 0014500018 scopus 로고
    • Kinetic mechanism of maltodextrin phosphorylase
    • Chao, J., Johnson, G. F. and Graves, D. J. (1969) Kinetic mechanism of maltodextrin phosphorylase. Biochemistry 8, 1459-1466
    • (1969) Biochemistry , vol.8 , pp. 1459-1466
    • Chao, J.1    Johnson, G.F.2    Graves, D.J.3
  • 9
    • 0000710491 scopus 로고    scopus 로고
    • Glycosyl transfer
    • (Sinnott, M. L., ed.), Academic Press, San Diego, CA
    • Davies, G., Sinnott, M. L. and Withers, S. G. (1998) Glycosyl transfer. In Comprehensive Biological Catalysis, vol. 1 (Sinnott, M. L., ed.), pp. 119-208, Academic Press, San Diego, CA
    • (1998) Comprehensive Biological Catalysis , vol.1 , pp. 119-208
    • Davies, G.1    Sinnott, M.L.2    Withers, S.G.3
  • 10
    • 0033199576 scopus 로고    scopus 로고
    • Phosphorylase recognition and phosphorolysis of its oligosaccharide substrate: Answers to a long outstanding question
    • Watson, K. A., McCleverty, C., Geremia, S., Cottaz, S., Driguez, H. and Johnson, L. N. (1999) Phosphorylase recognition and phosphorolysis of its oligosaccharide substrate: answers to a long outstanding question. EMBO J. 18, 4619-4632
    • (1999) EMBO J. , vol.18 , pp. 4619-4632
    • Watson, K.A.1    McCleverty, C.2    Geremia, S.3    Cottaz, S.4    Driguez, H.5    Johnson, L.N.6
  • 11
    • 0036384359 scopus 로고    scopus 로고
    • Enzymatic catalysis in crystals of Escherichia coli maltodextrin phosphorylase
    • Geremia, S., Campagnolo, M., Schinzel, R. and Johnson, L. N. (2002) Enzymatic catalysis in crystals of Escherichia coli maltodextrin phosphorylase. J. Mol. Biol. 322, 413-423
    • (2002) J. Mol. Biol. , vol.322 , pp. 413-423
    • Geremia, S.1    Campagnolo, M.2    Schinzel, R.3    Johnson, L.N.4
  • 12
    • 0035644196 scopus 로고    scopus 로고
    • Dissection of nucleophilic and acid-base catalysis in glycosidases
    • Zechel, D. L. and Withers, S. G. (2001) Dissection of nucleophilic and acid-base catalysis in glycosidases. Curr. Opin. Chem. Biol. 5, 643-649
    • (2001) Curr. Opin. Chem. Biol. , vol.5 , pp. 643-649
    • Zechel, D.L.1    Withers, S.G.2
  • 13
    • 0032882011 scopus 로고    scopus 로고
    • Mutagenesis of glycosidases
    • Ly, H. D. and Withers, S. G. (1999) Mutagenesis of glycosidases. Annu. Rev. Biochem. 68, 487-522
    • (1999) Annu. Rev. Biochem. , vol.68 , pp. 487-522
    • Ly, H.D.1    Withers, S.G.2
  • 14
    • 0029944134 scopus 로고    scopus 로고
    • Mutational analysis of the oligosaccharide recognition site at the active site of Escherichia coli maltodextrin phosphorylase
    • Drueckes, P., Boeck, B., Palm, D. and Schinzel, R. (1996) Mutational analysis of the oligosaccharide recognition site at the active site of Escherichia coli maltodextrin phosphorylase. Biochemistry 35, 6727-6734
    • (1996) Biochemistry , vol.35 , pp. 6727-6734
    • Drueckes, P.1    Boeck, B.2    Palm, D.3    Schinzel, R.4
  • 15
    • 0028049476 scopus 로고
    • Dissecting differential binding in the forward and reverse reaction of Escherichia coli maltodextrin phosphorylase using 2-deoxyglucosyl substrates
    • Becker, S., Palm, D. and Schinzel, R. (1994) Dissecting differential binding in the forward and reverse reaction of Escherichia coli maltodextrin phosphorylase using 2-deoxyglucosyl substrates. J. Biol. Chem. 269, 2485-2490
    • (1994) J. Biol. Chem. , vol.269 , pp. 2485-2490
    • Becker, S.1    Palm, D.2    Schinzel, R.3
  • 16
    • 0025154906 scopus 로고
    • Escherichia coli maltodextrin phosphorylase: Contribution of active site residues glutamate-637 and tyrosine-538 to the phosphorolytic cleavage of α-glucans
    • Schinzel, R. and Palm, D. (1990) Escherichia coli maltodextrin phosphorylase: contribution of active site residues glutamate-637 and tyrosine-538 to the phosphorolytic cleavage of α-glucans. Biochemistry 29, 9956-9962
    • (1990) Biochemistry , vol.29 , pp. 9956-9962
    • Schinzel, R.1    Palm, D.2
  • 17
    • 0025900497 scopus 로고
    • The phosphate recognition site of Escherichia coli maltodextrin phosphorylase
    • Schinzel, R. and Drueckes, P. (1991) The phosphate recognition site of Escherichia coli maltodextrin phosphorylase. FEBS Lett. 286, 125-128
    • (1991) FEBS Lett. , vol.286 , pp. 125-128
    • Schinzel, R.1    Drueckes, P.2
  • 18
    • 0038192506 scopus 로고    scopus 로고
    • Tracking interactions that stabilize the dimer structure of starch phosphorylase from Corynebacterium callunae. Roles of Arg234 and Arg242 revealed by sequence analysis and site-directed mutagenesis
    • Griessler, R., Schwarz, A., Mucha, J. and Nidetzky, B. (2003) Tracking interactions that stabilize the dimer structure of starch phosphorylase from Corynebacterium callunae. Roles of Arg234 and Arg242 revealed by sequence analysis and site-directed mutagenesis. Eur. J. Biochem. 270, 2126-2136
    • (2003) Eur. J. Biochem. , vol.270 , pp. 2126-2136
    • Griessler, R.1    Schwarz, A.2    Mucha, J.3    Nidetzky, B.4
  • 19
    • 0028178684 scopus 로고
    • A new maltodextrin-phosphorylase from Corynebacterium callunae for the production of glucose-1-phosphate
    • Weinhäusel, A., Nidetzky, B., Rohrbach, M., Blauensteiner, B. and Kulbe, K. D. (1994) A new maltodextrin-phosphorylase from Corynebacterium callunae for the production of glucose-1-phosphate. Appl. Microbiol. Biotechnol. 41, 510-516
    • (1994) Appl. Microbiol. Biotechnol. , vol.41 , pp. 510-516
    • Weinhäusel, A.1    Nidetzky, B.2    Rohrbach, M.3    Blauensteiner, B.4    Kulbe, K.D.5
  • 20
    • 0001515809 scopus 로고
    • The enzymatic oxidation of pyridoxine and pyridoxamine phosphates
    • Wada, H. and Snell, E. E. (1961) The enzymatic oxidation of pyridoxine and pyridoxamine phosphates. J. Biol. Chem. 236, 2089-2095
    • (1961) J. Biol. Chem. , vol.236 , pp. 2089-2095
    • Wada, H.1    Snell, E.E.2
  • 21
    • 0343526758 scopus 로고    scopus 로고
    • Thermal denaturation pathway of starch phosphorylase from Corynebacterium callunae: Oxyanion binding provides the glue that efficiently stabilizes the dimer structure of the protein
    • Griessler, R., D'Auria, S, Tanfani, F. and Nidetzky, B. (2000) Thermal denaturation pathway of starch phosphorylase from Corynebacterium callunae: oxyanion binding provides the glue that efficiently stabilizes the dimer structure of the protein. Protein Sci. 9, 1149-1161
    • (2000) Protein Sci. , vol.9 , pp. 1149-1161
    • Griessler, R.1    D'Auria, S.2    Tanfani, F.3    Nidetzky, B.4
  • 22
    • 0030867469 scopus 로고    scopus 로고
    • α-1,4-D-Glucan phosphorylase of gram-positive Corynebacterium callunae: Isolation, biochemical properties and molecular shape of the enzyme from solution X-ray scattering
    • Weinhäusel, A., Griessler, R., Krebs, A, Zipper, P, Haltrich, D., Kulbe, K. D. and Nidetzky, B. (1997) α-1,4-D-Glucan phosphorylase of gram-positive Corynebacterium callunae: isolation, biochemical properties and molecular shape of the enzyme from solution X-ray scattering. Biochem. J. 326, 773-783
    • (1997) Biochem. J. , vol.326 , pp. 773-783
    • Weinhäusel, A.1    Griessler, R.2    Krebs, A.3    Zipper, P.4    Haltrich, D.5    Kulbe, K.D.6    Nidetzky, B.7
  • 23
    • 0345254937 scopus 로고    scopus 로고
    • Roles of individual enzyme-substrate interactions by α-1,3- galactosyltransferase in catalysis and specificity
    • Zhang, Y., Swaminathan, G. J., Deshpande, A., Boix, E., Natesh, R., Xie, Z., Acharya, K. R. and Brew, K. (2003) Roles of individual enzyme-substrate interactions by α-1,3-galactosyltransferase in catalysis and specificity. Biochemistry 42, 13512-13521
    • (2003) Biochemistry , vol.42 , pp. 13512-13521
    • Zhang, Y.1    Swaminathan, G.J.2    Deshpande, A.3    Boix, E.4    Natesh, R.5    Xie, Z.6    Acharya, K.R.7    Brew, K.8
  • 24
    • 3142615417 scopus 로고    scopus 로고
    • Intermediate trapping on a mutant retaining α-galactosyltransferase identifies an unexpected aspartate residue
    • Lairson, L. L., Chiu, C. P, Ly, H. D., He, S., Wakarchuk, W. W., Strynadka, N. C. and Withers, S. G. (2004) Intermediate trapping on a mutant retaining α-galactosyltransferase identifies an unexpected aspartate residue. J. Biol. Chem. 279, 28339-28344
    • (2004) J. Biol. Chem. , vol.279 , pp. 28339-28344
    • Lairson, L.L.1    Chiu, C.P.2    Ly, H.D.3    He, S.4    Wakarchuk, W.W.5    Strynadka, N.C.6    Withers, S.G.7
  • 25
    • 0037865396 scopus 로고    scopus 로고
    • Mapping the conformational itinerary of β-glycosidases by X-ray crystallography
    • Davies, G. J., Ducros, V. M., Varrot, A. and Zechel, D. L. (2003) Mapping the conformational itinerary of β-glycosidases by X-ray crystallography. Biochem. Soc. Trans. 31, 523-527
    • (2003) Biochem. Soc. Trans. , vol.31 , pp. 523-527
    • Davies, G.J.1    Ducros, V.M.2    Varrot, A.3    Zechel, D.L.4
  • 27
    • 0024598657 scopus 로고
    • Fluorinated and deoxygenated substrates as probes of transition-state structure in glycogen phosphorylase
    • Street, I. P, Rupitz, K. and Withers, S. G. (1989) Fluorinated and deoxygenated substrates as probes of transition-state structure in glycogen phosphorylase. Biochemistry 28, 1581-1587
    • (1989) Biochemistry , vol.28 , pp. 1581-1587
    • Street, I.P.1    Rupitz, K.2    Withers, S.G.3
  • 28
    • 0036909547 scopus 로고    scopus 로고
    • Insights into trehalose synthesis provided by the structure of the retaining glucosyltransferase OtsA
    • Gibson, R. P., Turkenburg, J. P., Charnock, S. J., Lloyd, R. and Davies, G. J. (2002) Insights into trehalose synthesis provided by the structure of the retaining glucosyltransferase OtsA. Chem. Biol. 9, 1337-1346
    • (2002) Chem. Biol. , vol.9 , pp. 1337-1346
    • Gibson, R.P.1    Turkenburg, J.P.2    Charnock, S.J.3    Lloyd, R.4    Davies, G.J.5
  • 29
    • 1642307849 scopus 로고    scopus 로고
    • The active site of the Escherichia colt glycogen synthase is similar to the active site of retaining GT-B glycosyltransferases. Biochem
    • Yep, A., Ballicora, M. A. and Preiss, J. (2004) The active site of the Escherichia colt glycogen synthase is similar to the active site of retaining GT-B glycosyltransferases. Biochem. Biophys. Res. Commun. 316, 960-966
    • (2004) Biophys. Res. Commun. , vol.316 , pp. 960-966
    • Yep, A.1    Ballicora, M.A.2    Preiss, J.3
  • 30
    • 0035151023 scopus 로고    scopus 로고
    • Crystal structure of the retaining galactosyltransferase LgtC from Neisseria meningitidis in complex with donor and acceptor sugar analogs
    • Persson, K., Ly, H. D., Dieckelmann, M., Wakarchuk, W. W., Withers, S. G. and Strynadka, N. C. (2001) Crystal structure of the retaining galactosyltransferase LgtC from Neisseria meningitidis in complex with donor and acceptor sugar analogs. Nat. Struct. Biol. 8, 166-175
    • (2001) Nat. Struct. Biol. , vol.8 , pp. 166-175
    • Persson, K.1    Ly, H.D.2    Dieckelmann, M.3    Wakarchuk, W.W.4    Withers, S.G.5    Strynadka, N.C.6
  • 31
    • 0036307824 scopus 로고    scopus 로고
    • Crystal structure of the autocatalytic initiator of glycogen biosynthesis, glycogenin
    • Gibbons, B. J., Roach, P. J. and Hurley, T. D. (2002) Crystal structure of the autocatalytic initiator of glycogen biosynthesis, glycogenin. J. Mol. Biol. 319, 463-477
    • (2002) J. Mol. Biol. , vol.319 , pp. 463-477
    • Gibbons, B.J.1    Roach, P.J.2    Hurley, T.D.3
  • 32
    • 0037008717 scopus 로고    scopus 로고
    • Structural basis of ordered binding of donor and acceptor substrates to the retaining glycosyltransferase, α-1,3-galactosyltransferase
    • Boix, E., Zhang, Y., Swaminathan, G. J., Brew, K. and Acharya, K. R. (2002) Structural basis of ordered binding of donor and acceptor substrates to the retaining glycosyltransferase, α-1,3-galactosyltransferase. J. Biol. Chem. 277, 28310-28318
    • (2002) J. Biol. Chem. , vol.277 , pp. 28310-28318
    • Boix, E.1    Zhang, Y.2    Swaminathan, G.J.3    Brew, K.4    Acharya, K.R.5
  • 33
    • 0012784535 scopus 로고    scopus 로고
    • Crystal structure of an α1,4-N-acetylhexosaminyltransferase (EXTL2), a member of the exostosin gene family involved in heparan sulfate biosynthesis
    • Pedersen, L. C., Dong, J., Taniguchi, F., Kitagawa, H., Krahn, J. M., Pedersen, L. G., Sugahara, K. and Negishi, M. (2003) Crystal structure of an α1,4-N-acetylhexosaminyltransferase (EXTL2), a member of the exostosin gene family involved in heparan sulfate biosynthesis. J. Biol. Chem. 278, 14420-14428
    • (2003) J. Biol. Chem. , vol.278 , pp. 14420-14428
    • Pedersen, L.C.1    Dong, J.2    Taniguchi, F.3    Kitagawa, H.4    Krahn, J.M.5    Pedersen, L.G.6    Sugahara, K.7    Negishi, M.8
  • 34
    • 0015240224 scopus 로고
    • Inhibition of muscle phosphorylase a by 5-gluconolactone
    • Gold, A. M., Legrand, E. and Sanchez, G. R. (1971) Inhibition of muscle phosphorylase a by 5-gluconolactone. J. Biol. Chem. 246, 5700-5706
    • (1971) J. Biol. Chem. , vol.246 , pp. 5700-5706
    • Gold, A.M.1    Legrand, E.2    Sanchez, G.R.3
  • 35
    • 0015245054 scopus 로고
    • Isotopic effects and inhibition of polysaccharide phosphorylase by 1,5-gluconolactone. Relationship to the catalytic mechanism
    • Tu, J. I., Jacobson, G. R. and Graves, D. J. (1971) Isotopic effects and inhibition of polysaccharide phosphorylase by 1,5-gluconolactone. Relationship to the catalytic mechanism. Biochemistry 10, 1229-1236
    • (1971) Biochemistry , vol.10 , pp. 1229-1236
    • Tu, J.I.1    Jacobson, G.R.2    Graves, D.J.3
  • 36
    • 0029953209 scopus 로고    scopus 로고
    • Ternary complex crystal structures of glycogen phosphorylase with the transition state analogue nojirimycin tetrazole and phosphate in the T and R states
    • Mitchell, E. P., Withers, S. G., Ermert, P., Vasella, A. T., Garman, E. F., Oikonomakos, N. G. and Johnson, L. N. (1996) Ternary complex crystal structures of glycogen phosphorylase with the transition state analogue nojirimycin tetrazole and phosphate in the T and R states. Biochemistry 35, 7341-7355
    • (1996) Biochemistry , vol.35 , pp. 7341-7355
    • Mitchell, E.P.1    Withers, S.G.2    Ermert, P.3    Vasella, A.T.4    Garman, E.F.5    Oikonomakos, N.G.6    Johnson, L.N.7
  • 37
    • 0000468730 scopus 로고    scopus 로고
    • Binding energy and catalysis: The implications for transition-state analogs and catalytic antibodies
    • Mader, M. M. and Bartlett, P. A. (1997) Binding energy and catalysis: the implications for transition-state analogs and catalytic antibodies. Chem. Rev. 97, 1281-1302
    • (1997) Chem. Rev. , vol.97 , pp. 1281-1302
    • Mader, M.M.1    Bartlett, P.A.2
  • 38
    • 0008916170 scopus 로고
    • Rapid equilibrium bireactantand terreactant systems
    • (Segel, I. H., ed.), Wiley, New York
    • Segel, I. H. (1993) Rapid equilibrium bireactantand terreactant systems. In Enzyme Kinetics (Segel, I. H., ed.), pp. 316-320, Wiley, New York
    • (1993) Enzyme Kinetics , pp. 316-320
    • Segel, I.H.1
  • 39
    • 0035971079 scopus 로고    scopus 로고
    • Crystallographic evidence for substrate-assisted catalysis in a bacterial β-hexosaminidase
    • Mark, B. L., Vocadlo, D. J., Knapp, S, Triggs-Raine, B. L., Withers, S. G. and James, M. N. (2001) Crystallographic evidence for substrate-assisted catalysis in a bacterial β-hexosaminidase. J. Biol. Chem. 276, 10330-10337
    • (2001) J. Biol. Chem. , vol.276 , pp. 10330-10337
    • Mark, B.L.1    Vocadlo, D.J.2    Knapp, S.3    Triggs-Raine, B.L.4    Withers, S.G.5    James, M.N.6
  • 41
    • 0028828695 scopus 로고
    • Stereochemistry of chitin hydrolysis by a plant chitinase/lysozyme and X-ray structure of a complex with allosamidin: Evidence for substrate assisted catalysis
    • Terwisscha van Scheltinga, A. C., Armand, S., Kalk, K. H., Isogai, A., Henrissat, B. and Dijkstra, B. W. (1995) Stereochemistry of chitin hydrolysis by a plant chitinase/lysozyme and X-ray structure of a complex with allosamidin: evidence for substrate assisted catalysis. Biochemistry 34, 15619-15623
    • (1995) Biochemistry , vol.34 , pp. 15619-15623
    • Terwisscha Van Scheltinga, A.C.1    Armand, S.2    Kalk, K.H.3    Isogai, A.4    Henrissat, B.5    Dijkstra, B.W.6
  • 42
    • 2942525887 scopus 로고    scopus 로고
    • Kinetic evidence related to substrate-assisted catalysis of family 18 chitinases
    • Honda, Y., Kitaoka, M. and Hayashi, K. (2004) Kinetic evidence related to substrate-assisted catalysis of family 18 chitinases. FEBS Lett. 567, 307-310
    • (2004) FEBS Lett. , vol.567 , pp. 307-310
    • Honda, Y.1    Kitaoka, M.2    Hayashi, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.