Amino Acid Residues at Protein-Protein Interfaces: Why Is Propensity so Different from Relative Abundance?

Journal of Physical Chemistry B

Volumn 107, Issue 36, 2003, Pages 9929-9932

  Fernández, Ariel ^a   Scott, L Ridgway ^b   Scheraga, Harold A ^c  

^a UNIVERSITY OF CHICAGO   (United States)

^b THE UNIVERSITY OF CHICAGO   (United States)

^c Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DEGREES OF FREEDOM (MECHANICS); DEHYDRATION; ENTROPY; HYDRATION; HYDROGEN BONDS; MOLECULES; MONOMERS; SURFACE CHEMISTRY;

NONPOLAR SIDE CHAINS;

PROTEINS;

EID: 17544404458     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp0348124     Document Type: Article

References (19)

1. Jones, S.; Thornton, J. M. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 13-20.
2. Jones, S.; Thornton, J. M. J. Mol. Biol. 1997, 272, 133-143.
3. DeLano, W. L.; Ultsch, M. H.; de Vos, A. M.; Wells, J. A. Science 2000, 287, 1279-1283.
4. Hu, Z.; Ma, B.; Wolfson, H.; Nussinov, R. Proteins: Struct. Funct. Gen. 2000, 39, 331-342.
5. Glaser, F.; Steinberg, D. M.; Vakser, I. A.; Ben-Tal, N. Proteins: Struct. Funct. Gen. 2001, 43, 89-102.
6. Smith, G. R.; Sternberg, M. J. Curr. Opin. Struct. Biol. 2002, 12, 28-35.
7. Fernández, A.; Scheraga, H. A. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 113-118.
8. Némethy, G.; Scheraga, H. A. J. Phys. Chem. 1962, 66, 1773-1789; Erratum J. Phys. Chem. 1963, 67, 2888.
9. Sondermann, P.; Huber, R.; Oosthuizen, V.; Jacob, U. Nature 2000, 406, 267-273.
10. Boeckmann, B.; Bairoch, A.; Apweiler, R.; Blatter, M.-C.; Estreicher, A. ; Gasteiger, E.; Martin, M. J.; Michoud, K.; O'Donovan, C.; Phan, I.; Pilbout, S.; Schneider, M. Nucleic Acids Res. 2003, 31, 365-370.
11. Bleasby, A. J.; Akrigg, D.; Attwood, T. K. Nucleic Acids Res. 1994, 22, 3574-3577.
12. Shindyalov, I. N.; Bourne, P. E. Protein Eng. 1998, 11, 739-747.
13. Bahar, I.; Jernigan, R. L. J. Mol. Biol. 1997, 266, 195-214.
14. Fernández, A.; Berry, R. S. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 2391-2396.
15. Némethy, G.; Steinberg, I. Z.; Scheraga, H. A. Biopolymers 1963, 1, 43-69.
16. Makhatadze, G. I.; Privalov, P. L. Adv. Protein Chem. 1995, 47, 307-425.
17. Fernández, A.; Sosnick, T. R.; Colubri J. Mol. Biol. 2002, 321, 659-675.
18. Laskowski, M., Jr.; Scheraga, H. A. J. Am. Chem. Soc. 1954, 76, 6305-6319.
19. Fernández, A.; Scott, L. R. Biophys. J. 2003, in press.