Chlorella virus PBCV-1 encodes a homolog of the bacteriophage T4 UV damage repair gene denV

Applied and Environmental Microbiology

Volumn 63, Issue 4, 1997, Pages 1551-1556

  Furuta, Masakazu ^a,d   Schrader, John O ^b   Schrader, Holly S ^b   Kokjohn, Tyler A ^b   Nyaga, Simon ^c   McCullough, Amanda K ^c   Lloyd, R Stephen ^c   Burbank, Dwight E ^a   Landstein, Dorit ^a   Lane, Les ^a   Van Etten, James L ^a  

^a UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^b UNIVERSITY OF NEBRASKA   (United States)

^c UNIVERSITY OF TEXAS MEDICAL BRANCH   (United States)

^d Osaka Prefecture University   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

PYRIMIDINE DIMER;

ARTICLE; BACTERIOPHAGE T4; CHLORELLA; DNA DAMAGE; DNA REPAIR; EXCISION REPAIR; GENE FUNCTION; NONHUMAN; NORTHERN BLOTTING; PHOTOREACTIVATION; RADIATION INJURY; SURVIVAL; ULTRAVIOLET RADIATION; VIRUS PARTICLE;

CHLORELLA VIRUS; ESCHERICHIA COLI; PARAMECIUM BURSARIA CHLORELLA VIRUS 1;

EID: 17544388791     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/aem.63.4.1551-1556.1997     Document Type: Article

References (51)

1. Bernstein, H., and C. Bernstein. 1989. Bacteriophage T4 genetic homologies with bacteria and eukaryotes. J. Bacteriol. 171:2265-2270.
2. Demple, B., and S. Linn. 1980. DNA N-glycosylases and UV repair. Nature 287:203-208.
3. Dodson, M. L., R. D. Schrock, and R. S. Lloyd. 1993. Evidence for an imino intermediate in the T4 endonuclease V reaction. Biochemistry 32:8284-8290.
4. Doi. T., A. Recktenwald, Y. Karaki, M. Kikuchi, K. Morikawa, M. Ikehara, T. Inaoka, N. Hori, and E. Ohtsuka. 1992. Role of the basic amino acid cluster and Glu-23 in pyrimidine dimer glycosylase activity of T4 endonuclease V. Proc. Natl. Acad. Sci. USA 89:9420-9424.
5. Friedberg, E. C., G. C. Walker, and W. Siede. 1995. DNA repair and mutagenesis. ASM Press, Washington, D.C.
6. Fuhrman, J. A., and C. A. Suttle. 1993. Viruses in marine planktonic systems. Oceanography 6:51-63.
7. Girton, L., and J. L. Van Etten. 1987. Restriction site map of the chlorella virus PBCV-1 genome. Plant Mol. Biol. 9:247-257.
8. Grafstrom, R. H., L. Park, and L. Grossman. 1982. Enzymatic repair of pyrimidine dimer-containing DNA. A 5′ dimer DNA glycosylase: 3′-apyrimidinic endonuclease mechanism from Micrococcus luteus. J. Biol. Chem. 257:13465-13474.
9. Hamilton, K. K., P. M. H. Kim, and P. W. Doetsch. 1992. A eukaryotic DNA glycosylase/lyase recognizing ultraviolet light-induced pyrimidine dimers. Nature 356:725-728.
10. Harm, W. 1980. Biological effects of ultraviolet radiation. Cambridge University Press, New York, N.Y.
11. Hori, N., T. Doi, Y. Karaki, M. Kikuchi, M. Ikehara, and E. Ohtsuka. 1992. Participation of glutamic acid 23 of T4 endonuclease V in the β-elimination reaction of an abasic site in a synthetic duplex DNA. Nucleic Acids Res. 20:4761-4764.
12. Howard-Flanders, P., L. Theriot, and J. B. Stedeford. 1969. Some properties of excision-defective recombination-deficient mutants of Escherichia coli K-12. J. Bacteriol. 97:1134-1141.
13. Kokjohn, T. A., and R. V. Miller. 1994. IncN plasmids mediate UV resistance and error-prone repair in Pseudomonas aeruginosa PAO. Microbiology 140: 43-48.
14. Landstein, D., D. E. Burbank, J. W. Nietfeldt, and J. L. Van Etten. 1995. Large deletions in antigenic variants of the chlorella virus PBCV-1. Virology 214:413-120.
15. Lloyd, R. S., and P. C. Hanawalt. 1981. Expression of the denV gene of bacteriophage T4 cloned in Escherichia coli. Proc. Natl. Acad. Sci. USA 78:2796-2800.
16. Lu, Z., Y. Li, Y. Zhang, G. F. Kutish, D. L. Rock, and J. L. Van Etten. 1995. Analysis of 45 kb of DNA located at the left end of the chlorella virus PBCV-1 genome. Virology 206:339-352.
17. Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor. N.Y.
18. Manuel, R. C., E. W. Czerwinski, and R. S. Lloyd. 1996. Identification of the structural and functional domains of mutY: an Escherichia coli DNA mismatch repair enzyme. J. Biol. Chem. 271:16218-16226.
19. Mitra, A., D. W. Higgins, and N. J. Rohe. 1994. Chlorella virus gene promoter functions as a strong promoter both in plants and bacteria. Biochem. Biophys. Res. Commun. 204:187-194.
20. Morikawa, K., O. Matsumoto, M. Tsujimuro, K. Katayanagi, M. Ariyoshi, T. Doi, M. Ikehara, T. Inaoka, and E. Ohtsuka. 1992. X-ray structure of T4 endonuclease V: an excision repair enzyme specific for a pyrimidine dimer. Science 256:523-526.
21. Mullis, K. B., and F. A. Faloona. 1987. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol. 155:335-350.
22. Nakabeppu, Y., and M. Sekiguchi. 1981. Physical association of pyrimidine dimer DNA glycosylase and apurinic/apyrimidinic DNA endonuclease essential for repair of ultraviolet-damaged DNA. Proc. Natl. Acad. Sci. USA 78:2742-2746.
23. Piersen, C. E., M. A. Prince, M. L. Augustine, M. L. Dodson, and R. S. Lloyd. 1995. Purification and cloning of Micrococcus luteus ultraviolet endonuclease, an N-glycosylase/abasic lyase that proceeds via an imino enzyme-DNA intermediate. J. Biol. Chem. 270:23475-23484.
24. Radany, E. H., and E. C. Friedberg. 1980. A pyrimidine dimer-DNA glycosylase activity associated with the v gene product of bacteriophage T4. Nature 286:182-185.
25. Reisser, W., D. E. Burbank, S. M. Meints, R. H. Meints, B. Becker, and J. L. Van Etten. 1988. A comparison of viruses infecting two different Chlorella-like green algae. Virology 167:143-149.
26. Rohozinski, J., L. E. Girton, and J. L. Van Etten. 1989. Chlorella viruses contain linear nonpermuted double stranded DNA genomes with covalently closed hairpin ends. Virology 168:363-369.
27. Romberg, M. T., J. W. Stewart, A. K. McCullough, T. Wood, Y. Lei, M. L. Dodson, J. L. Van Etten, and R. S. Lloyd. Unpublished data.
28. Ross, P. M., K. Woodley, and M. Baird. 1989. Quantitative autoradiography of dot blots using a microwell densitometer. BioTechniques 7:680-688.
29. Schrock, R. D., and R. S. Lloyd. 1991. Reductive methylation of the amino terminus of endonuclease V eradicates catalytic activities - evidence for an essential role of the amino terminus in the chemical mechanisms of catalysis J. Biol. Chem. 266:17631-17639.
30. Schuster, A. M., L. Girton, D. E. Burbank, and J. L. Van Etten. 1986. Infection of a Chlorella-like alga with the virus PBCV-1: transcription studies. Virology 148:181-189.
31. Seawell, P. C., C. A. Smith, and A. K. Ganesan. 1980. denV gene of bacteriophage T4 determines a DNA glycosylase specific for pyrimidine dimers in DNA. J. Virol. 35:790-797.
32. Simonson, C. S., T. A. Kokjohn, and R. V. Miller. 1990. Inducible UV repair potential of Pseudomonas aeruginosa PAO. J. Gen. Microbiol. 136:1241-1249.
33. Skrdla, M. P., D. E. Burbank, Y. Xia, R. H. Meints, and J. L. Van Etten. 1984. Structural proteins and lipids in a virus, PBCV-1, which replicates in a chlorella-like alga. Virology 135:308-315.
34. Suttle, C. A., and A. M. Chan. 1994. Dynamics and distribution of cyanophages and their effect on marine Synechococcus spp. Appl. Environ. Microbiol. 60:3167-3174.
35. Suttle, C. A., A. M. Chan, C. Feng, and D. R. Garza. 1993. Cyanophages and sunlight: a paradox, p. 303-307. In R. Guerrero and C. Pedros-Alio (ed.), Trends in microbial ecology. Spanish Society of Microbiology, Barcelona, Spain.
36. Suttle, C. A., and F. Chen. 1992. Mechanisms and rules of decay of marine viruses in seawater. Appl. Environ. Microbiol. 58:3721-3729.
37. Valerie, K., E. E. Henderson, and J. K. de Reil. 1985. Expression of a cloned denV gene of bacteriophage T4 in Escherichia coli. Proc. Natl. Acad. Sci. USA 82:4763-4767.
38. Van Etten, J. L. 1995. Minireview: giant chlorella viruses. Mol. Cells 5:99-105.
39. Van Etten, J. L., D. E. Burbank, D. Kuczmarski, and R. H. Meints. 1983. Virus infection of culturable chlorella-like algae and development of a plaque assay. Science 219:994-996.
40. Van Etten, J. L., D. E. Burbank, A. M. Schuster, and R. H. Meints. 1985. Lytic viruses infecting a Chlorella-like alga. Virology 140:135-143.
41. Van Etten, J. L., D. E. Burbank, Y. Xia, and R. H. Meints. 1983. Growth cycle of a virus, PBCV-1, that infects chlorella-like algae. Virology 126:117-125.
42. Van Etten, J. L., L. C. Lane, and R. H. Meints. 1991. Viruses and virus-like particles of eukaryotic algae. Microbiol. Rev. 55:586-620.
43. Van Etten, J. L., R. H. Meints, D. E. Burbank, D. Kuczmarski, D. A. Cuppels, and L. C. Lane. 1981. Isolation and characterization of a virus from the intracellular green alga symbiotic with Hydra viridis. Virology 113:704-711.
44. Van Etten, J. L., C. H. Van Etten, J. K. Johnson, and D. E. Burbank. 1985. A survey for viruses from fresh water that infect a eukaryotic chlorella-like green alga. Appl. Environ. Microbiol. 49:1326-1328.
45. Vassylyev, D. G., T. Kashiwagi, Y. Mikami, M. Ariyoshi, S. Iwai, E. Ohtsuka, and K. Monikawa. 1995. Atomic model of a pyrimidine dimer excision repair enzyme complexed with a DNA substrate: structural basis for damaged DNA recognition. Cell 83:773-782.
46. Wang, I.-N., Y. Li, Q. Que, M. Bhattacharya, L. C. Lane, W. G. Chaney, and J. L. Van Etten. 1993. Evidence for virus-encoded glycosylation specificity. Proc. Natl. Acad. Sci. USA 90:3840-3844.
47. Warner, H. R., B. F. Demple, W. A. Deutsch, C. M. Kane, and S. Linn. 1980. Apurinic/apyrimidinic endonucleases in repair of pyrimidine dimers and other lesions in DNA. Proc. Natl. Acad. Sci. USA 77:4602-4606.
48. Weigle, J. J. 1953. Induction of mutations in a bacterial virus Proc. Natl. Acad. Sci. USA 39:628-636.
49. Yamada, T., T. Higashiyama, and T. Fukuda. 1991. Screening of natural waters for viruses which infect chlorella cells. Appl. Environ. Microbiol. 57:3433-3437.
50. Yasuda, S., and M. Sekiguchi. 1970. T4 endonuclease involved in repair of DNA. Proc. Natl. Acad. Sci. USA 67:1839-1845.
51. Zhang, Y., D. E. Burbank, and J. L. Van Etten. 1988. Chlorella viruses isolated in China. Appl. Environ. Microbiol. 54:2170-2173.