Structural basis for the presence of a monoglucosylated oligosaccharide in mature glycoproteins

Biochemical and Biophysical Research Communications

Volumn 331, Issue 1, 2005, Pages 100-106

  Jung, Hyo Il ^a   Kim, Young Hwan ^b   Kim, Soohyun ^b  

^a Yonsei University   (South Korea)

^b Korea Basic Science Institute (KBSI)   (South Korea)

Author keywords

Arylphorin; Glycans; Glycoprotein; Hexamerin; Homology modelling; Insect; Monoglucosylated oligosaccharides

Indexed keywords

ARYLPHORIN; GLYCAN; GLYCOPROTEIN; GLYCOSIDASE; INSECT PROTEIN; OLIGOSACCHARIDE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BIOCHEMISTRY; CARBOHYDRATE ANALYSIS; CONTROLLED STUDY; GLYCOSYLATION; LARVA; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN CARBOHYDRATE INTERACTION; PROTEIN DEGRADATION; PROTEIN FUNCTION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; THREE DIMENSIONAL IMAGING;

EID: 17444429974     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.02.192     Document Type: Article

References (32)

1. J.J. Beintema, W.T. Stam, B. Hazes, and M.P. Smidt Evolution of arthropod hemocyanins and insect storage proteins (hexamerins) Mol. Biol. Evol. 11 1994 493 503
2. K. Fujimoto, N. Okino, S. Kawabata, S. Iwanaga, and E. Ohnishi Nucleotide sequence of the cDNA encoding the proenzyme of phenol oxidase A1 of Drosophila melanogaster Proc. Natl. Acad. Sci. USA 92 1995 7769 7773
3. T. Kawabata, Y. Yasuhara, M. Ochiai, S. Matsuura, and M. Ashida Molecular cloning of insect pro-phenol oxidase: a copper-containing protein homologous to arthropod hemocyanin Proc. Natl. Acad. Sci. USA 92 1995 7774 7778
4. T. Burmester, and K. Scheller Complete cDNA-sequence of the receptor responsible for arylphorin uptake by the larval fat body of the blowfly, Calliphora vicina Insect Biochem. Mol. Biol. 25 1995 981 989
5. T. Burmester, and K. Scheller Common origin of arthropod tyrosinase, arthropod hemocyanin, insect hexamerin, and dipteran arylphorin receptor J. Mol. Evol. 42 1996 713 728
6. K.E. van Holde, and K.I. Miller Hemocyanins Adv. Protein Chem. 47 1995 1 81
7. J.M. Turbeville, D.M. Pfeifer, K.G. Field, and R.A. Raff The phylogenetic status of arthropods, as inferred from 18S rRNA sequences Mol. Biol. Evol. 8 1991 669 686
8. M. Averof, and M. Akam Insect-crustacean relationships: insights from comparative developmental and molecular studies Philos. Trans. R. Soc. Lond. B 347 1995 293 303
9. M. Friedrich, and D. Tautz Ribosomal DNA phylogeny of the major extant arthropod classes and the evolution of myriapods Nature 376 1995 165 167
10. W.H. Telfer, and J.G. Kunkel The function and evolution of insect storage hexamers Annu. Rev. Entomol. 36 1991 205 228
11. S. Kim, S.K. Hwang, R.A. Dwek, P.M. Rudd, Y.H. Ahn, E.H. Kim, C. Cheong, S.I. Kim, N.S. Park, and S.M. Lee Structural determination of the N-glycans of a lepidopteran arylphorin reveals the presence of a monoglucosylated oligosaccharide in the storage protein Glycobiology 13 2003 147 157
12. S.I. Kim, S.M. Kweon, E.A. Kim, J.Y. Kim, S. Kim, J.S. Yoo, and Y.M. Park Characterization of RNase-like major storage protein from the ginseng root by proteomic approach J. Plant Physiol. 161 2004 837 845
13. N. Blom, T. Sicheritz-Ponten, R. Gupta, S. Gammeltoft, and S. Brunak Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence Proteomics 4 2004 1633 1649
14. A. Loss, P. Bunsmann, A. Bohne, A. Loss, E. Schwarzer, E. Lang, and C.W. von der Lieth SWEET-DB: an attempt to create annotated data collections for carbohydrates Nucleic Acids Res. 30 2002 405 408
15. A. Bohne, E. Lang, and C.W. von der Lieth W3-SWEET: carbohydrate modelling by Internet J. Mol. Model. 4 1998 33 43
16. R. Pappu, R. Hart, and J. Ponder Analysis and application of potential energy smoothing for global optimization J. Phys. Chem. B 102 1998 9725 9742
17. J. Shi, T.L. Blundell, and K. Mizuguchi FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties J. Mol. Biol. 310 2001 243 257
18. K. Mizuguchi, C.M. Deane, T.L. Blundell, M.S. Johnson, and J.P. Overington JOY: protein sequence-structure representation and analysis Bioinformatics 14 1998 617 623
19. A. Sali, and T.L. Blundell Comparative protein modelling by satisfaction of spatial restraints J. Mol. Biol. 234 1993 779 815
20. R. Luthy, J.U. Bowie, and D. Eisenberg Assessment of protein models with three-dimensional profiles Nature 356 1992 83 85
21. S.C. Lovell, I.W. Davis, W.B. Arendall III, P.I.W. de Bakker, J.M. Word, M.G. Prisant, J.S. Richardson, and D.C. Richardson Structure validation by Calpha geometry: phi, psi and Cbeta deviation Proteins: Struct. Funct. Genet. 50 2002 437 450
22. P. Kraulis MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures J. Appl. Crystallogr. 24 1991 946 950
23. A. Volbeda, and W.G. Hol Crystal structure of hexameric haemocyanin from Panulirus interruptus refined at 3.2 Å resolution J. Mol. Biol. 209 1989 249 279
24. B. Hazes, K.A. Magnus, C. Bonaventura, J. Bonaventura, Z. Dauter, K.H. Kalk, and W.G. Hol Crystal structure of deoxygenated Limulus polyphemus subunit II hemocyanin at 2.18 Å resolution: clues for a mechanism for allosteric regulation Protein Sci. 2 1993 597 619
25. R.A. Laskowski, M.W. MacArthur, D.S. Moss, and J.M. Thornton PROCHECK-a program to check the stereochemical quality of protein structures J. Appl. Crystallogr. 26 1993 283 291
26. M. Ohta, J. Hamako, S. Yamamoto, H. Hatta, M. Kim, T. Yamamoto, S. Oka, T. Mizuochi, and F. Matsuura Structures of asparagine-linked oligosaccharides from hen egg-yolk antibody (IgY). Occurrence of unusual glucosylated oligo-mannose type oligosaccharides in a mature glycoprotein Glycoconj. J. 8 1991 400 413
27. F. Matsuura, M. Ohta, K. Murakami, and Y. Matsuki Structures of asparagine linked oligosaccharides of immunoglobulins (IgY) isolated from egg-yolk of Japanese quail Glycoconj. J. 10 1993 202 213
28. N. Suzuki, K.-H. Khoo, C.-M. Chen, H.-C. Chen, and Y.C. Lee N-Glycan structures of pigeon IgG: a major serum glycoprotein containing Gal1-4Gal termini J. Biol. Chem. 278 2003 46293 46306
29. T. Endo, M. Hoshi, S. Endo, Y. Arata, and A. Kobata Structures of the sugar chains of a major glycoprotein present in the egg jelly coat of a starfish, Asterias amurensis Arch. Biochem. Biophys. 252 1987 105 112
30. P. De Waard, J.P. Kamerling, H. Van Halbeek, J.F. Vliegenthart, and J.J. Broertjes Characterization of N-linked gluco-oligomannose type of carbohydrate chains of glycoproteins from the ovary of the starfish Asterias rubens (L.) Eur. J. Biochem. 168 1987 679 685
31. I. Khalaila, J. Peter-Katalinic, C. Tsang, C.M. Radcliffe, E.D. Aflalo, D.J. Harvey, R.A. Dwek, P.M. Rudd, and A. Sagi Structural characterization of the N-glycan moiety and site of glycosylation in vitellogenin from the decapod crustacean Cherax quadricarinatus Glycobiology 14 2004 767 774
32. Y. Kimura, D. Hess, and A. Sturm The N-glycans of Jack bean α-mannosidase. Structure, topology and function Eur. J. Biochem. 264 1999 168 175