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Volumn 340, Issue 2, 2005, Pages 226-230

Data analysis methods for detection of differential protein expression in two-dimensional gel electrophoresis

Author keywords

Data analysis; Differential expression; Significance analysis of microarrays; Two dimensional gel electrophoresis

Indexed keywords

BIOASSAY; DATA HANDLING; DATA REDUCTION; ELECTROPHORESIS; INFORMATION ANALYSIS; PROTEOMICS;

EID: 17444386712     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ab.2005.02.028     Document Type: Article
Times cited : (62)

References (22)
  • 1
    • 0032502928 scopus 로고    scopus 로고
    • An integrated approach to proteome analysis: Identification of proteins associated with cardiac hypertrophy
    • D. Arnott, K.L. O'Connell, K.L. King, and J.T. Stults An integrated approach to proteome analysis: identification of proteins associated with cardiac hypertrophy Anal. Biochem. 258 1998 1 18
    • (1998) Anal. Biochem. , vol.258 , pp. 1-18
    • Arnott, D.1    O'Connell, K.L.2    King, K.L.3    Stults, J.T.4
  • 2
    • 0042861611 scopus 로고    scopus 로고
    • The role of bioinformatics in two-dimensional gel electrophoresis
    • A.W. Dowsey, M.J. Dunn, and G.Z. Yang The role of bioinformatics in two-dimensional gel electrophoresis Proteomics 3 2003 1567 1596
    • (2003) Proteomics , vol.3 , pp. 1567-1596
    • Dowsey, A.W.1    Dunn, M.J.2    Yang, G.Z.3
  • 3
    • 14644429693 scopus 로고    scopus 로고
    • Numerical approaches for quantitative analysis of two-dimensional maps: A review of commercial software and home-made systems
    • E. Marengo, E. Robotti, F. Antonucci, D. Cecconi, N. Campostrini, and P.G. Righetti Numerical approaches for quantitative analysis of two-dimensional maps: A review of commercial software and home-made systems Proteomics 5 2005 654 666
    • (2005) Proteomics , vol.5 , pp. 654-666
    • Marengo, E.1    Robotti, E.2    Antonucci, F.3    Cecconi, D.4    Campostrini, N.5    Righetti, P.G.6
  • 4
    • 0037390115 scopus 로고    scopus 로고
    • A novel approach to spot detection for two-dimensional gel electrophoresis images using pixel value collection
    • P. Cutler, G. Heald, I.R. White, and J. Ruan A novel approach to spot detection for two-dimensional gel electrophoresis images using pixel value collection Proteomics 3 2003 392 401
    • (2003) Proteomics , vol.3 , pp. 392-401
    • Cutler, P.1    Heald, G.2    White, I.R.3    Ruan, J.4
  • 5
    • 11144260096 scopus 로고    scopus 로고
    • Processing of data generated by 2-dimensional gel electrophoresis for statistical analysis: Missing data, normalization, and statistics
    • J. Chang, H.V. Remmen, W.F. Ward, F.E. Regnier, A. Richardson, and J. Cornell Processing of data generated by 2-dimensional gel electrophoresis for statistical analysis: missing data, normalization, and statistics J. Proteome Res. 3 2004 1210 1218
    • (2004) J. Proteome Res. , vol.3 , pp. 1210-1218
    • Chang, J.1    Remmen, H.V.2    Ward, W.F.3    Regnier, F.E.4    Richardson, A.5    Cornell, J.6
  • 6
    • 4544270574 scopus 로고    scopus 로고
    • DNA microarray normalization methods can remove bias from differential protein expression analysis of 2D difference gel electrophoresis results
    • D.P. Kreil, N.A. Karp, and K.S. Lilley DNA microarray normalization methods can remove bias from differential protein expression analysis of 2D difference gel electrophoresis results Bioinformatics 20 2004 2026 2034
    • (2004) Bioinformatics , vol.20 , pp. 2026-2034
    • Kreil, D.P.1    Karp, N.A.2    Lilley, K.S.3
  • 7
    • 0035999977 scopus 로고    scopus 로고
    • A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments
    • W. Pan A comparative review of statistical methods for discovering differentially expressed genes in replicated microarray experiments Bioinformatics 18 2002 546 554
    • (2002) Bioinformatics , vol.18 , pp. 546-554
    • Pan, W.1
  • 8
    • 0347724111 scopus 로고    scopus 로고
    • A generalized likelihood ratio test to identify differentially expressed genes from microarray data
    • S. Wang, and S. Ethier A generalized likelihood ratio test to identify differentially expressed genes from microarray data Bioinformatics 20 2004 100 104
    • (2004) Bioinformatics , vol.20 , pp. 100-104
    • Wang, S.1    Ethier, S.2
  • 9
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • V.G. Tusher, R. Tibshirani, and G. Chu Significance analysis of microarrays applied to the ionizing radiation response Proc. Natl. Acad. Sci. USA 98 2001 5116 5121
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 13
    • 0036898577 scopus 로고    scopus 로고
    • Microarray data normalization and transformation
    • J. Quackenbush Microarray data normalization and transformation Nat. Genet. 32 2002 496 501
    • (2002) Nat. Genet. , vol.32 , pp. 496-501
    • Quackenbush, J.1
  • 14
    • 0036376993 scopus 로고    scopus 로고
    • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    • S. Dudoit, Y.H. Yang, T.P. Speed, and M.J. Callow Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments Stat. Sin. 12 2002 111 140
    • (2002) Stat. Sin. , vol.12 , pp. 111-140
    • Dudoit, S.1    Yang, Y.H.2    Speed, T.P.3    Callow, M.J.4
  • 15
    • 2442453377 scopus 로고    scopus 로고
    • Determining a significant change in protein expression with DeCyder during a pair-wise comparison using two-dimensional difference gel electrophoresis
    • N.A. Karp, D.P. Kreil, and K.S. Lilley Determining a significant change in protein expression with DeCyder during a pair-wise comparison using two-dimensional difference gel electrophoresis Proteomics 4 2004 1421 1432
    • (2004) Proteomics , vol.4 , pp. 1421-1432
    • Karp, N.A.1    Kreil, D.P.2    Lilley, K.S.3
  • 19
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Y.H. Yang, S. Dudoit, P. Luu, D.M. Lin, V. Peng, J. Ngai, and T.P. Speed Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation Nucleic Acids Res. 30 2002 e15
    • (2002) Nucleic Acids Res. , vol.30 , pp. 15
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 20
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genome wide studies
    • J.D. Storey, and R. Tibshirani Statistical significance for genome wide studies Proc. Natl. Acad. Sci. USA 100 2003 9440 9445
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 21
    • 0036020944 scopus 로고    scopus 로고
    • Operating characteristics and extensions of the false discovery rate procedure
    • C. Genovese, and L. Wasserman Operating characteristics and extensions of the false discovery rate procedure J. R. Stat. Soc. 64 2002 499 517
    • (2002) J. R. Stat. Soc. , vol.64 , pp. 499-517
    • Genovese, C.1    Wasserman, L.2
  • 22
    • 0036953264 scopus 로고    scopus 로고
    • Calculation of the minimum number of replicate spots required for detection of significant gene expression fold change in microarray experiments
    • M.A. Black, and R.W. Doerge Calculation of the minimum number of replicate spots required for detection of significant gene expression fold change in microarray experiments Bioinformatics 18 2002 1609 1616
    • (2002) Bioinformatics , vol.18 , pp. 1609-1616
    • Black, M.A.1    Doerge, R.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.