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Volumn 4, Issue 2, 2005, Pages 358-368

P-Mod: An algorithm and software to map modifications to peptide sequences using tandem MS data

Author keywords

Algorithm; Extreme value statistics; Protein modifications; Tandem mass spectrometry

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MATHEMATICAL COMPUTING; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN LOCALIZATION; STATISTICAL ANALYSIS; TANDEM MASS SPECTROMETRY;

EID: 17444383114     PISSN: 15353893     EISSN: None     Source Type: Journal    
DOI: 10.1021/pr0498234     Document Type: Article
Times cited : (88)

References (22)
  • 1
    • 0031962612 scopus 로고    scopus 로고
    • Mass Spectrometry and the Age of the Proteome
    • Yates, J. R. Mass Spectrometry and the Age of the Proteome. J. Mass. Spectrom. 1998, 33, 1-19.
    • (1998) J. Mass. Spectrom. , vol.33 , pp. 1-19
    • Yates, J.R.1
  • 2
    • 0037435030 scopus 로고    scopus 로고
    • Mass Spectrometry-Based Proteomics
    • Aebersold, R.; Mann, M. Mass Spectrometry-Based Proteomics. Nature 2003, 422, 198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 3
    • 0000857494 scopus 로고
    • An Approach to Correlate Tandem Mass-Spectral Data of Peptides with Amino-Acid-Sequences in A Protein Database
    • Eng, J. K.; McCormack, A. L.; Yates, J. R. An Approach to Correlate Tandem Mass-Spectral Data of Peptides With Amino-Acid-Sequences in A Protein Database. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.3
  • 4
    • 0033434080 scopus 로고    scopus 로고
    • Probability-Based Protein Identification by Searching Sequence Databases Using Mass Spectrometry Data
    • Perkins, D. N.; Pappin, D. J.; Creasy, D. M.; Cottrell, J. S. Probability-Based Protein Identification by Searching Sequence Databases Using Mass Spectrometry Data. Electrophoresis 1999, 20, 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.2    Creasy, D.M.3    Cottrell, J.S.4
  • 6
    • 0034652301 scopus 로고    scopus 로고
    • Automated Identification of Amino Acid Sequence Variations in Proteins by HPLC/Microspray Tandem Mass Spectrometry
    • Gatlin, C. L.; Eng, J. K.; Cross, S. T.; Detter, J. C.; Yates, J. R., III Automated Identification of Amino Acid Sequence Variations in Proteins by HPLC/Microspray Tandem Mass Spectrometry. Anal. Chem. 2000, 72, 757-763.
    • (2000) Anal. Chem. , vol.72 , pp. 757-763
    • Gatlin, C.L.1    Eng, J.K.2    Cross, S.T.3    Detter, J.C.4    Yates III, J.R.5
  • 7
    • 0036807449 scopus 로고    scopus 로고
    • Error Tolerant Searching of Uninterpreted Tandem Mass Spectrometry Data
    • Creasy, D. M.; Cottrell, J. S. Error Tolerant Searching of Uninterpreted Tandem Mass Spectrometry Data. Proteomics. 2002, 2, 1426-1434.
    • (2002) Proteomics , vol.2 , pp. 1426-1434
    • Creasy, D.M.1    Cottrell, J.S.2
  • 8
    • 0036182039 scopus 로고    scopus 로고
    • Proteomic Approaches to Characterize Protein Modifications: New Tools to Study the Effects of Environmental Exposures
    • Liebler, D. C. Proteomic Approaches to Characterize Protein Modifications: New Tools to Study the Effects of Environmental Exposures. Environ. Health Perspect. 2002, 110 Suppl 1, 3-9.
    • (2002) Environ. Health Perspect. , vol.110 , Issue.1 SUPPL. , pp. 3-9
    • Liebler, D.C.1
  • 9
    • 0037373455 scopus 로고    scopus 로고
    • Endogenous Generation of Reactive Oxidants and Electrophiles and Their Reactions with DNA and Protein
    • Marnett, L. J.; Riggins, J. N.; West, J. D. Endogenous Generation of Reactive Oxidants and Electrophiles and Their Reactions With DNA and Protein. J. Clin. Invest. 2003, 111, 583-593.
    • (2003) J. Clin. Invest. , vol.111 , pp. 583-593
    • Marnett, L.J.1    Riggins, J.N.2    West, J.D.3
  • 10
    • 0035107717 scopus 로고    scopus 로고
    • Efficiency of Database Search for Identification of Mutated and Modified Proteins Via Mass Spectrometry
    • Pevzner, P. A.; Mulyukov, Z.; Dancik, V.; Tang, C. L. Efficiency of Database Search for Identification of Mutated and Modified Proteins Via Mass Spectrometry. Genome Res. 2001, 11, 290-299.
    • (2001) Genome Res. , vol.11 , pp. 290-299
    • Pevzner, P.A.1    Mulyukov, Z.2    Dancik, V.3    Tang, C.L.4
  • 11
    • 0035870190 scopus 로고    scopus 로고
    • SALSA: A Pattern Recognition Algorithm to Detect Electrophile-Adducted Peptides by Automated Evaluation of CID Spectra in LC-MS/MS Analyses
    • Hansen, B. T.; Jones, J. A.; Mason, D. E.; Liebler, D. C. SALSA: a Pattern Recognition Algorithm to Detect Electrophile-Adducted Peptides by Automated Evaluation of CID Spectra in LC-MS/MS Analyses. Anal. Chem. 2001, 73, 1676-1683.
    • (2001) Anal. Chem. , vol.73 , pp. 1676-1683
    • Hansen, B.T.1    Jones, J.A.2    Mason, D.E.3    Liebler, D.C.4
  • 12
    • 0036138754 scopus 로고    scopus 로고
    • Peptide Sequence Motif Analysis of Tandem MS Data with the SALSA Algorithm
    • Liebler, D. C.; Hansen, B. T.; Davey, S. W.; Tiscareno, L.; Mason, D. E. Peptide Sequence Motif Analysis of Tandem MS Data With the SALSA Algorithm. Anal. Chem. 2002, 74, 203-210.
    • (2002) Anal. Chem. , vol.74 , pp. 203-210
    • Liebler, D.C.1    Hansen, B.T.2    Davey, S.W.3    Tiscareno, L.4    Mason, D.E.5
  • 18
  • 19
    • 0032913309 scopus 로고    scopus 로고
    • Role of Oxidative Stress in Diabetic Complications: A New Perspective on an Old Paradigm
    • Baynes, J. W.; Thorpe, S. R. Role of Oxidative Stress in Diabetic Complications: a New Perspective on an Old Paradigm. Diabetes 1999, 48, 1-9.
    • (1999) Diabetes , vol.48 , pp. 1-9
    • Baynes, J.W.1    Thorpe, S.R.2
  • 20
    • 0142029557 scopus 로고    scopus 로고
    • Chemical Modification of Proteins by Lipids in Diabetes
    • Baynes, J. W. Chemical Modification of Proteins by Lipids in Diabetes. Clin. Chem. Lab Med. 2003, 41, 1159-1165.
    • (2003) Clin. Chem. Lab Med. , vol.41 , pp. 1159-1165
    • Baynes, J.W.1
  • 21
    • 3242768438 scopus 로고    scopus 로고
    • Modification of Cytochrome c by 4-Hydroxy- 2-Nonenal: Evidence for Histidine, Lysine, and Arginine-Aldehyde Adducts
    • Isom, A. L.; Barnes, S.; Wilson, L.; Kirk, M.; Coward, L.; Darley-Usmar, V. Modification of Cytochrome c by 4-Hydroxy- 2-Nonenal: Evidence for Histidine, Lysine, and Arginine-Aldehyde Adducts. J. Am. Soc. Mass Spectrom. 2004, 15, 1136-1147.
    • (2004) J. Am. Soc. Mass Spectrom. , vol.15 , pp. 1136-1147
    • Isom, A.L.1    Barnes, S.2    Wilson, L.3    Kirk, M.4    Coward, L.5    Darley-Usmar, V.6
  • 22
    • 0036852609 scopus 로고    scopus 로고
    • Covalent Modification of Amino Acid Nucleophiles by the Lipid Peroxidation Products 4-Hydroxy-2-Nonenal and 4-Oxo-2-Nonenal
    • Doom, J. A.; Petersen, D. R. Covalent Modification of Amino Acid Nucleophiles by the Lipid Peroxidation Products 4-Hydroxy-2-Nonenal and 4-Oxo-2-Nonenal. Chem. Res. Toxicol. 2002, 15, 1445-1450.
    • (2002) Chem. Res. Toxicol. , vol.15 , pp. 1445-1450
    • Doom, J.A.1    Petersen, D.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.