Targeting the aluminum tolerance gene Alt3 region in rye, using rice/rye micro-colinearity

Theoretical and Applied Genetics

Volumn 110, Issue 5, 2005, Pages 906-913

  Miftahudin, ^a,b   Chikmawati, T ^a,b   Ross, K ^a   Scoles, G J ^c   Gustafson, J P ^a  

^a UNIVERSITY OF MISSOURI   (United States)

^b BOGOR AGRICULTURAL UNIVERSITY   (Indonesia)

^c UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; COMPLEXATION; CROPS; CULTIVATION; GENES; LAND USE; TOXICITY;

ARABLE LAND; CO-SEGREGATION; PUTATIVE GENES; SYNTENIC RELATIONSHIP;

GENETIC ENGINEERING;

ALUMINUM; PRIMER DNA;

ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; CROSS BREEDING; DRUG RESISTANCE; GENETIC MARKER; GENETICS; NORTHERN BLOTTING; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RICE; RYE; SOUTHERN BLOTTING; SYNTENY;

ALUMINUM; BLOTTING, NORTHERN; BLOTTING, SOUTHERN; CHROMOSOME MAPPING; CROSSES, GENETIC; DNA PRIMERS; DRUG RESISTANCE; GENETIC MARKERS; ORYZA SATIVA; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SECALE CEREALE; SYNTENY;

COMPLEX COMPOUNDS; CULTIVATION; FARM CROPS; GENES; GENETIC ENGINEERING; LAND USE; TOXICITY;

ORYZA SATIVA; SECALE CEREALE;

EID: 17444363041     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-004-1909-0     Document Type: Article

References (40)

1. Ahn S, Anderson JA, Sorrells ME, Tanksley SD (1993) Homoeologous relationships of rice, wheat, and maize chromosomes. Mol Gen Genet 241:483-490
2. Aniol A, Gustafson JP (1984) Chromosome location of genes controlling aluminum tolerance in wheat, rye, and triticale. Can J Genet Cytol 26:701-705
3. Arumuganathan K, Earle ED (1991) Nuclear content of some important plant species. Plant Mol Biol Rep 9:208-218
4. Bennetzen JL, Ramakrishna W (2002) Numerous small rearrangements of gene content, order, and orientation differentiate grass genome. Plant Mol Biol 48:821-827
5. Bennetzen JL, San Miguel P, Chen M, Tikhonov A, Francki M, Avramova Z (1998) Grass genomes. Proc Natl Acad Sci USA 95:1975-1978
6. Buell CR, Yuan Q, Ouyang S, Liu J, Moffat KS et al (2002) Oryza sativa chromosome 3 BAC OSJNBa0091p11 genomic sequence. The Institute for Genomic Research. Direct submission
7. Chen M, San Miguel P, de Oliveira AC, Woo SS, Zhang H, et al (1997) Microcolinearity in sh2-homoeologous regions of the maize, rice and sorghum genome. Proc Natl Acad Sci USA 94:3431-3435
8. Chen M, San Miguel P, Bennetzen JL (1998) Sequence organization in the Sh2/a1-homologous regions of sorghum and rice. Genetics 148:435-443
9. Collins FS (1992) Positional cloning: let's not call it reverse anymore. Nat Genet 1:3-6
10. Ezaki B, Katsuhara M, Kawamura M, Matsumoto H (2001) Different mechanism of four aluminum (Al)-resistant transgene for Al toxicity in Arahidopsis. Plant Physiol 127:918-927
11. Gale MD, Devos KM (1998) Comparative genetics in the grasses. Proc Natl Acad Sci USA 95:1971-1974
12. Gallego FJ, Galles B, Benito C (1998) Molecular markers linked to the aluminum tolerance gene Alt1 in rye (Secale cereale L.). Theor Appl Genet 97:1104-1109
13. Han F, Kleinhofs A, Ullrich SE, Killian A, Yano M, Sasaki T (1998) Synteny with rice: analysis of barley malting quality QTLs and rpg4 chromosome regions. Genome 41:373-380
14. Kato K, Miura H, Sawada S (1999) Comparative mapping of the wheat Vrn-A1 region with the rice Hd-6 region. Genome 42:204-209
15. Killian A, Chen J, Han F, Steffenson B, Kleinhofs A (1997) Towards map-base cloning of the barley stem rust resistance genes Rpgl and rpg4 using rice as an intergenomic cloning vehicle. Plant Mol Biol 35:187-195
16. Korzun V, Malyshev S, Voylokov A, Borner A (1997) RFLP-based mapping of three mutant loci in rye (Secale cereale L.) and their relation to homoeologous loci within the Gramineae. Theor Appl Genet 95:468-473
17. Kosambi DD (1944) Ann Eugen 12:172-175
18. Kurata N, Moore G, Nagamura Y, Foote T, Yano M, et al (1994) Conservation of genome structure between rice and wheat. Biotechnology 12:276-278
19. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, et al (1987) MAPMAKER: an interactive computer package for constructing primary linkage maps of experimental and natural populations. Genomics 1:174-181
20. Matsumoto H (2000) Cell biology of aluminum toxicity and tolerance in higher plants. Int Rev Cytol 200:1-46
21. Miftahudin, Scoles GJ, Gustafson JP (2004) Development of PCR-based co-dominant markers flanking the Alt3 gene in rye. Genome 47:231-238
22. Miftahudin, Scoles GJ, Gustafson JP (2002) AFLP markers tightly linked to the aluminum-tolerance gene Alt3 in rye (Secale cereale L.). Theor Appl Genet 104:626-631
23. Moore G, Devos KM, Wang Z, Gale MD (1995) Grasses, line up and form a circle. Curr Biol 5:737-739
24. Nguyen VT, Burow MD, Nguyen HT, Le BT, Le TD, Peterson AH (2001) Molecular mapping of genes conferring aluminum tolerance in rice (Oryza sativa L.). Theor Appl Genet 102:1002-1010
25. O'Neill CM, Bancroft I (2000) Comparative physical mapping of segments of the genome of Brassica oleracea var. alboglabra that are homoeologous to sequenced regions of chromosome 4 and 5 of Arabidopsis thaliana. Plant J 23:233-243
26. Riede CR, Anderson JA (1996) Linkage of RFLP markers to an aluminum tolerance gene in wheat. Crop Sci 36:905-909
27. Rodriguez Milla MA, Gustafson JP (2001) Genetic and physical characterization of chromosome 4DL in wheat. Genome 44:883-892
28. Rodriguez Milla MA, Butler E, Rodriguez Huete A, Wilson C, Anderson O, Gustafson JP (2002) Expressed sequence tagbased gene expression analysis under aluminum stress in rye. Plant Physiol 130:1706-1716
29. Saghai-Maroof MA, Soliman KM, Jorgensen RA, Allard RW (1984) Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc Natl Acad Sci USA 81:8014-8018
30. Sasaki T, Yamamoto Y, Ezaki B, Katsuhara M, Ahn SJ, Ryan PR, Delhaize E, Matsumoto H (2004) A wheat gene encoding an aluminum-activated malate transporter. Plant J 37:645-653
31. Sibov ST, Gaspar M, Silva MJ, Ottoboni LMM, Arruda P, Souza AP (1999) Two genes control aluminum tolerance in maize: genetic and molecular mapping analyses. Genome 42:475-482
32. Somers DJ, Briggs KG, Gustafson JP (1996) Aluminum stress and protein synthesis in near isogenic lines of Triticum aestivum differing in aluminum tolerance. Physiol Plant 97:694-700
33. Tang Y, Sorrells ME, Kochian LV, Garvin DF (2000) Identification of RFLP markers linked to the barley aluminum tolerance gene Alp. Crop Sci 40:778-782
34. Tarchini R, Biddle P, Wineland R, Tingey S, Rafalski A (2000) The complete sequence of 340 kb of DNA around the rice Adh1-Adh2 region reveals interrupted colinearity with maize chromosome 4. Plant Cell 12:381-391
35. Tikhonov AP, San Miguel PJ, Nakajima Y, Gorenstein ND, Bennetzen JL, Avramova Z (1999) Colinearity and its exception in orthologous adh regions of maize and sorghum. Proc Natl Acad Sci USA 96:7409-7414
36. Van Deynze AE, Dubcovsky J, Gill KS, Nelson JC, Sorrells ME et al (1995a) Molecular-genetic maps for group i chromosomes of Triticeae species and their relation to chromosomes in rice and oat. Genome 38:45-59
37. Van Deynze AE, Nelson JC, O'Donoughue LS, Ahn SN, Siripoonwiwat W, et al (1995b) Comparative mapping in grasses. Oat relationships. Mol Gen Genet 249:349-356
38. Van Deynze AE, Nelson JC, Yglesias ES, Harrington SE, Braga DP, et al (1995c) Comparative mapping in grasses. Wheat relationships. Mol Gen Genet 248:744-754
39. Wilson WA, Harrington SE, Woodman WL, Lee M, Sorrells ME, McCouch SR (1999) Can we infer the genome structure of progenitor maize through comparative analysis of rice, maize, and the domesticated panicoids? Genetics 153:453-473
40. Wu P, Liao CY, Hu B, Yi KK, Jin WZ et al (2000) QTLs and epistasis for aluminum tolerance in rice (Oryza sativa L.) at different seedling stages. Theor Appl Genet 100:1295-1303