The use of RAPD genomic fingerprinting to study relatedness in strains of Acidithiobacillus ferrooxidans

Journal of Microbiological Methods

Volumn 62, Issue 1, 2005, Pages 103-112

  Waltenbury, Danielle R ^a   Leduc, L G ^b   Ferroni, G D ^c  

^a Science Program   (Canada)

^b LAURENTIAN UNIVERSITY   (Canada)

^c NORTHERN ONTARIO SCHOOL OF MEDICINE   (Canada)

Author keywords

Acidithiobacillus; Diversity; Molecular fingerprinting; RAPD

Indexed keywords

PRIMER DNA;

ACIDITHIOBACILLUS FERROOXIDANS; ARITHMETIC; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CALCULATION; CANADA; CLUSTER ANALYSIS; CONTROLLED STUDY; CULTURE MEDIUM; DNA EXTRACTION; DNA FINGERPRINTING; GEL ELECTROPHORESIS; GENE AMPLIFICATION; GENE CONSTRUCT; GENETIC VARIABILITY; GENOME; NONHUMAN; PHOTOGRAPHY; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; UNITED KINGDOM; UNITED STATES;

EID: 17044416491     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mimet.2005.02.003     Document Type: Article

References (21)

1. R. Bishop, B. Sohanpal, and S. Morzaria Theileria parva: detection of genomic polymorphisms by polymerase chain reaction amplification of DNA using arbitrary primers Exp. Parasitol. 77 1993 53 61
2. R.B. Caligiorne, M.A. Resende, E. Paiva, and V. Azevedo Use of RAPD (random amplified polymorphic DNA) to analyse genetic diversity of dematiaceous fungal pathogens Can. J. Microbiol. 45 1999 408 412
3. R.F. Gomes, A.M. Macedo, S.D.J. Pena, and M.N. Melo Leishmania (Viannia) braziliensis: genetic relationships between strains isolated from different areas of Brazil as revealed by DNA fingerprinting and RAPD Exp. Parasitol. 80 1995 681 687
4. A.P. Harrison Jr. Genomic and physiological diversity amongst strains of Thiobacillus ferrooxidans and genomic comparison with Thiobacillus thiooxidans Arch. Microbiol. 131 1982 68 76
5. P. Janssen, R. Coopman, G. Huys, J. Swings, M. Bleeker, P. Vos, M. Zabeau, and K. Kusters Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy Microbiology 142 1996 1881 1893
6. D.B. Johnson Selective solid media for isolating and enumerating acidophilic bacteria J. Microbiol. Methods 23 1995 205 218
7. D.J. Lane, D.A. Stahl, G.J. Olsen, D.J. Heller, and N.R. Pace Phylogenetic analysis of the genera Thiobacillus and Thiomicrospira by 5S rRNA sequences J. Bacteriol. 163 1985 75 81
8. D.J. Lane, A.P. Harrison Jr., D. Stahl, B. Pace, S.J. Giovannoni, G.J. Olsen, and N.R. Pace Evolutionary relationships among sulfur- and iron-oxidizing eubacteria J. Bacteriol. 174 1992 269 278
9. L.G. Leduc, and G.D. Ferroni The chemolithotrophic bacterium Thiobacillus ferrooxidans FEMS Microbiol. Rev. 14 1994 103 120
10. L.G. Leduc, J.T. Trevors, and G.D. Ferroni Thermal characterization of different isolates of Thiobacillus ferrooxidans FEMS Microbiol. Lett. 108 1993 189 194
11. H.L. Manning New medium for isolating iron-oxidizing and heterotrophic acidophilic bacteria from acid mine drainage Appl. Microbiol. 30 1975 1010 1016
12. J. Martin-Kearly, J.A. Gow, M. Péloquin, and C.W. Greer Numerical analysis and the application of random amplified polymorphic DNA polymerase chain reaction to the differentiation of Vibrio strains from a seasonal cold ocean Can. J. Microbiol. 40 1994 446 455
13. M.T.M. Novo, A.P. DeSouza, O. Garcia Jr., and L.M.M. Ottoboni RAPD genomic fingerprinting differentiates Thiobacillus ferrooxidans strains Syst. Appl. Microbiol. 19 1996 91 95
14. S. Sakallah, W. Pasculle, R. Lanning, D. McDevitt, and D. Cooper Typing of Legionella pneumophila serogroup 1 isolates by degenerate (d-) RAPD fingerprinting Mol. Cell. Probes 9 1995 405 414
15. A. Schippers, R. Hallmann, S. Wentzien, and W. Sand Microbial diversity in uranium mine waste heaps Appl. Environ. Microbiol. 61 1995 2930 2935
16. S. Selenska-Pobell, A. Otto, and S. Kutschke Identification and discrimination of thiobacilli using ARDREA, RAPD and rep-APD J. Appl. Microbiol. 84 1998 681 687
17. P.H.A. Sneath, and R.R. Sokal Numerical taxonomy: the principles and practice of numerical classification 1973 W.H. Freeman and Comp. San Fransisco
18. 2-fixation and iron oxidation as measures of growth Arch. Microbiol. 88 1973 285 298
19. J. Versalovic, M. Schneider, F.J. deBruijn, and J.R. Lupski Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction Methods Mol. Cell. Biol. 5 1994 25 40
20. J. Welsh, and M. McClelland Fingerprinting genomes using PCR with arbitrary primers Nucleic Acids Res. 18 1990 7213 7218
21. J.G.K. Williams, A.R. Kubelik, K.J. Livak, J.A. Rafalski, and S.V. Tingey DNA polymorphisms amplified by arbitrary primers are useful as genetic markers Nucleic Acids Res. 18 1990 6531 6535