Characteristics of rhizobia nodulating beans in the central region of Minnesota

Canadian Journal of Microbiology

Volumn 50, Issue 12, 2004, Pages 1023-1031

  Bernal, G R ^a,c   Tlusty, B ^a   Estevez De Jensen, C ^a   Van Berkum, P ^b   Graham, P H ^a  

^a UNIVERSITY OF MINNESOTA   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

^c Instituto Nacional Autonomo de Investigaciones Agropecuarias Ecuador   (Ecuador)

Author keywords

Phaseolus vulgaris; Rhizobium diversity; Seed treatment; Taxonomy

Indexed keywords

FATTY ACIDS; GENES; IMPURITIES; MICROBIOLOGY; RNA; SEED;

BEANS; GENE SEQUENCE ANALYSIS; RHIZOBIA; RHIZOBIUM ETLI;

PLANTS (BOTANY);

RNA 16S;

SEED TREATMENT; TAXONOMY;

ARTICLE; BEAN; ECOSYSTEM; GENE SEQUENCE; GENETIC VARIABILITY; NODULATION; NONHUMAN; PHASEOLUS VULGARIS; PHENOTYPE; PHYLOGENY; PLANT SEED; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RHIZOBIUM; STRAIN DIFFERENCE; TAXONOMY; UNITED STATES;

ANTI-BACTERIAL AGENTS; CAPTAN; DNA FINGERPRINTING; DNA, BACTERIAL; DNA, RIBOSOMAL; FABACEAE; FATTY ACIDS; GENES, RRNA; MINNESOTA; PHASEOLUS; PHYLOGENY; POLYMERASE CHAIN REACTION; RHIZOBIUM; RHIZOBIUM ETLI; RHIZOBIUM LEGUMINOSARUM; RHIZOBIUM TROPICI; RNA, RIBOSOMAL, 16S; SEEDS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY; SOIL MICROBIOLOGY; STREPTOMYCIN;

CERATONIA; FATTY ACIDS; IMPURITIES; LEGUMES; MICROBIOLOGY; PLANTS; SEEDS;

MINNESOTA; NORTH AMERICA; UNITED STATES; WESTERN HEMISPHERE; WORLD;

EID: 17044380850     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/w04-092     Document Type: Article

References (50)

1. Aguilar, O.M., Lopez, M.V., and Riccillo, P.M. 2001. The diversity of rhizobia nodulating beans in Northwest Argentina as a source of more efficient inoculant strains. J. Biotechnol. 91: 181-188.
2. Amarger, N., Macheret, V., and Laguerre, G. 1997. Rhizobium gallicum sp. nov., and Rhizobium giardinii sp. nov., from Phaseolus vulgaris nodules. Int. J. Syst. Bacteriol. 47: 996-1006.
3. Anyango, B., Wilson, J.K., Beynon, J.L., and Giller, K.E. 1995. Diversity of rhizobia nodulating Phaseolus vulgaris L. in two Kenyan soils of contrasting pHs. Appl. Environ. Microbiol. 61: 4016-4021.
4. Bernal, G., and Graham, P.H. 2001. Diversity in the rhizobia associated with Phaseolus vulgaris L. in Ecuador, and comparisons with Mexican bean rhizobia. Can. J. Microbiol. 47: 526-534.
5. Beyene, D., Kassa, S., Ampy, F., Assefa, A., Gebremedhin, T., and van Berkum, P. 2004. Ethiopian soils harbor natural populations of rhizobia that form symbioses with common bean (Phaseolus vulgaris L.). Arch. Microbiol. 181: 129-136.
6. Bhuvaneswari, T., Turgeon, G., and Bauer, W. 1980. Early events in the infection of soybean (Glycine max L. Merr.) by Rhizobium japonicum. Plant Physiol. 67: 1027-1031.
7. Bhuvaneswari, T., Bhagwat, A., and Bauer, W. 1981. Transient susceptibility of root cells in four common legumes to nodulation by rhizobia. Plant Physiol. 68: 1144-1149.
8. Cargeeg, P., and Estevez de Jensen, C. 2004. (Becker Underwood, Saskatoon and University of Minnesota, respectively.) Personal communication.
9. Cubo, M.T., Buendia-Claveria, A.M., Beringer, J.E., and Ruiz-Sainz, J.E. 1988. Melanin production by Rhizobium strains. Appl. Environ. Microbiol. 54: 1812-1817.
10. - natural mutant. Arch. Microbiol. 153: 305-310.
11. Diouf, A., Lajudie, P. de, Neyra, M., Kersters, K., Gillis, M., Martinez-Romero, E., and Gueye, M. 2000. Polyphasic characterization of rhizobia that nodulate Phaseolus vulgaris in West Africa (Senegal and Gambia). Int. J. Syst. Evol. Microbiol. 50: 159-170.
12. Eardly, B.D., Fu Sheng Wang, Whittam, T.S., and Selander, R.K. 1995. Species limits in Rhizobium populations that nodulate the common bean (Phaseolus vulgaris). Appl. Environ. Microbiol. 61: 507-512.
13. Estevez de Jensen, C., Percich, J.A., and Graham, P.H. 2002. Integrated management strategies of bean root rot with Bacillus subtilis and Rhizobium in Minnesota. Field Crops Res. 74: 107-115.
14. Geniaux, E., Laguerre, G., and Amarger, N. 1993. Comparison of geographically distant populations of Rhizobium isolated from root nodules of Phaseolus vulgaris. Mol. Ecol. 2: 295-302.
15. Gherna, R.L. 1994. Culture preservation. In Manual of methods for general bacteriology. Edited by P. Gerhardt et al. American Society for Microbiology, Washington, D.C. pp. 208-217.
16. Graham, P.H., Ballen, K.G., Montealegre, C., Jones, R.K., Fischer, B., and Luque, E. 1999. Characterization of rhizobia associated with Dalea spp. in natural prairies and revegetation areas in Minnesota. In Highlights of nitrogen fixation research. Edited by E. Martinez and G. Hernandez. Kluwer Academic/Plenum Publishers. New York. pp. 60-75.
17. Hagen, M.J., and Hamrick, J.L. 1996. Population level processes in Rhizobium leguminosarum bv. trifolii: role of founder effects. Mol. Ecol. 5: 707-714.
18. Hart, J.P., and Scarry, M.C. 1999. The age of common beans (Phaseolus vulgaris) in the Northeastern United States. Am. Antiq. 64: 653-658.
19. Herrera Cervera, J.A., Caballero-Mellado, J., Laguerre, G., Tichy, H.V., Requena, N., Amarger, N., Martinez-Romero, E., Olivares, J., and Sanjuan, J. 1999. At least five rhizobial species nodulate Phaseolus vulgaris in a Spanish soil. FEMS Microbiol. Ecol. 30: 87-97.
20. Hungria, M., Andrade, D.D., Colozzi, A., and Balota, E.L. 1997. Interactions among soil microorganisms and bean and maize grown in monoculture or intercropped. Pesq. Agropec. Bras. 32: 807-818.
21. Jarvis, B.D.W., and Tighe, S.W. 1994. Rapid identification of Rhizobium species based on cellular fatty acid analysis. Plant Soil, 161: 31-41.
22. Kaplan, L., and Lynch, T.F. 1999. Phaseolus (Fabaceae) in archeology: AMS radiocarbon dates and their significance for pre-Colombian agriculture. Econ. Bot. 53: 261-272.
23. Martinez, E., Pardo, M., Palacios, R., and Cevallos, M. 1985. Reiteration of nitrogen fixation gene sequence and specificity of Rhizobium in nodulation and nitrogen fixation in Phaseolus vulgaris. J. Gen. Microbiol. 131: 1779-1786.
24. Martinez-Romero, E. 2003. Diversity of Rhizobium-Phaseolus vulgaris symbiosis: overview and perspectives. Plant Soil, 252: 11-23.
25. Martinez-Romero, E. 2004. (Universidad Nacional Autonoma de Mexico (UNAM).) Personal communication.
26. Martinez-Romero, E., Segovia, L., Mercante, F.M., Franco, A.A., Graham, P., and Pardo, M.A. 1991. Rhizobium tropici, a novel species nodulating Phaseolus vulgaris L. beans and Leucaena sp. trees. Int. J. Syst. Bacteriol. 41: 417-426.
27. McDermott, T.R., and Graham, P.H. 1990. Competitive ability and efficiency in nodule formation of strains of Bradyrhizobium japonicum. Appl. Environ. Microbiol. 56: 3035-3039.
28. McInnes, A., Thies, I.E., Abbott, L.K., and Howieson, J.G. 2004. Structure and diversity among rhizobial strains, populations and communities. Soil Biol. Biochem. 36: 1295-1308.
29. Mhamdi, R., Jebara, M., Aouani, M.E., Ghrir, R., and Mars, M. 1999. Genotypic diversity and symbiotic effectiveness of rhizobia isolated from root nodules of Phaseolus vulgaris L. grown in Tunisian soils. Biol. Fertil. Soils, 28: 313-320.
30. Michiels, J., Dombrecht, B., Vermeiren, N., Xi-Chuanwu, X., Luyten, E., and Vanderleyden, J. 1998. Phaseolus vulgaris is a non-selective host for nodulation. FEMS Microbiol. Ecol. 26: 193-205.
31. Ownbey, G.B., and Morley, T. 1991. Vascular plants of Minnesota: a checklist and atlas. University of Minnesota Press, Minneapolis. ISBN 0-8166-1915-8, pp 306.
32. Perez-Ramirez, N.O., Rogel, M.A., Wang, E., Castellanos, J.Z., and Martinez-Romero, E. 1998. Seeds of Phaseolus vulgaris bean carry Rhizobium etli. FEMS Microbiol. Ecol. 26: 289-296.
33. Percich, J.A. 2004. (University of Minnesota.) Personal communication.
34. Rodrigues Navarro, D.M., Bundia, A.M., Camacho, M., Lucas, M.M., and Santamaria, C. 2000. Characterization of Rhizobium spp. bean isolates from south-west Spain. Soil Biol. Biochem. 32: 1601-1613.
35. Sambrook, J., Fritsch, E., and Maniatis, T. 1989. Molecular cloning. 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
36. Sears, O.K., and Clark, F.M. 1930. Non-reciprocal cross-inoculation of legume nodule bacteria. Soil Sci. 30: 237-242.
37. Sessitsch, A., Howieson, J.G., Perret, X., Antoun, H., and Martinez-Romero, E. 2002. Advances in Rhizobium research. Crit. Rev. Plant Sci. 21: 323-378.
38. Silva, C., Vinuesa, P., Eguiarte, L.E., Martinez-Romero, E., and Souza, V. 2003. Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico: Population genetics and biogeographical implications. Appl. Environ. Microbiol. 69: 884-893.
39. Somasegaran, P., and Hoben, H. 1994. Handbook for rhizobia. Springer Laboratory, N.Y.
40. Souza, V., Bain, J., Silva, C., Bouchet, V., Valera, A., Marquez, E., and Eguiarte, L.E. 1997. Ethnomicrobiology: do agricultural practices modify the population structure of the nitrogen fixing bacteria Rhizobium etli biovar phaseoli. J. Ethnobiol. 17: 249-266.
41. Tlusty, B., van Berkum, P., and Graham, P.H. 2005. Characteristics of the rhizobia associated with Dalea spp. in three prairie areas in Minnesota and Iowa. Can. J. Microbiol. In press.
42. van Berkum, P., and Fuhrmann, J.J. 2000. Evolutionary relationships among the soybean bradyrhizobia reconstructed from 16S rRNA gene and internally transcribed spacer region sequence divergence. Int. J. Syst. Evol. Microbiol. 50: 2165-2172.
43. +) bean rhizobia as Rhizobium tropic. Appl. Environ. Microbiol. 60: 554-561.
44. van Berkum, P., Beyene, D., and Eardly, B.D. 1996. Phylogenetic relationships among Rhizobium strains nodulating the common bean (Phaseolus vulgaris L.). Int. J. Syst. Bacteriol. 46: 240-244.
45. Velasquez, E., Martinez-Romero, E., Rodriguez-Navarro, D.N., Trujillo, M.E., Daza, A., Mateos, P.F., Martinez-Molina, E., and van Berkum, P. 2001. Characterization of rhizobial isolates of Phaseolus vulgaris by staircase electrophoresis of low-molecular-weight RNA. Appl. Environ. Microbiol. 67: 1008-1010.
46. Versalovic, J., Schneider, M., de Bruijn, F.J., and Lupski, J.R. 1994. Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol. Cell. Biol. 5: 25-40.
47. Vincent, J.M. 1970. A manual for the practical study of the root-nodule bacteria. IBP Handbook No15. Blackwell Scientific Publishers, Oxford, UK.
48. Young, J.P.W., and Wexler, M. 1988. Sym plasmid and chromosomal genotypes are correlated in field populations of Rhizobium leguminosarum. J. Gen. Microbiol. 134: 2731-2739.
49. Young, J.M., Kuykendall, L.D., Martinez-Romero, E., Kerr, A., and Sawada, H. 2001. A revision of Rhizobium Frank 1889, with an emended description of the genus, and the inclusion of all species of Agrobacterium Conn 1942 and Allorhizobium undicola de Lajudie et al. 1998 as new combinations: Rhizobium radiobacter, R. rhizogenes, R. rubi, R. undicola and R. vitis. Int. J. Syst. Evol. Microbiol. 51: 89-103.
50. Zhang, X., Harper, R., Karsisto, M., and Lindstrom, K. 1991. Diversity of Rhizobium bacteria isolated from the root nodules of leguminous trees. Int. J. Syst. Bacteriol. 41: 104-113.