Optical projection tomography for spatio-temporal analysis in the zebrafish

Methods in Cell Biology

Volumn 2004, Issue 76, 2004, Pages 37-50

  Bryson Richardson, Robert J ^a   Currie, Peter D ^a  

^a VICTOR CHANG CARDIAC RESEARCH INSTITUTE   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

PROPIDIUM IODIDE;

ANIMAL; ARTICLE; CHEMISTRY; COMPUTER PROGRAM; CONFOCAL MICROSCOPY; FLUORESCENCE MICROSCOPY; HISTOLOGY; IMAGE PROCESSING; METHODOLOGY; PRENATAL DEVELOPMENT; THREE DIMENSIONAL IMAGING; TISSUE FIXATION; TOMOGRAPHY; ZEBRA FISH;

ANIMALS; IMAGE PROCESSING, COMPUTER-ASSISTED; IMAGING, THREE-DIMENSIONAL; MICROSCOPY, CONFOCAL; MICROSCOPY, FLUORESCENCE; PROPIDIUM; SOFTWARE; TISSUE FIXATION; TOMOGRAPHY; ZEBRAFISH;

EID: 16644398688     PISSN: 0091679X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0091-679x(04)76003-3     Document Type: Review

References (13)

1. Baldock, R. A., Bard, J. B., Burger, A., Burton, N., Christiansen, J., Feng, G., Hill, B., Houghton, D., Kaufman, M., Rao, J., et al. (2003). EMAP and EMAGE: A framework for understanding spatially organized data. Neuroinformatics 1, 309-325.
2. Bassett, D. I., Bryson-Richardson, R. J., Daggett, D. F., Gautier, P., Keenan, D. G., and Currie, P. D. (2003). Dystrophin is required for the formation of stable muscle attachments in the zebrafish embryo. Development 130, 5851-5860.
3. Brune, R. M., Bard, J. B., Dubreuil, C., Guest, E., Hill, W., Kaufman, M., Stark, M., Davidson, D., and Baldock, R. A. (1999). A three-dimensional model of the mouse at embryonic day 9. Dev. Biol. 216, 457-468.
4. Cooper, M. S., D'Amico, L. A., and Henry, C. A. (1999). Confocal microscopic analysis of morphogenetic movements. In "Methods in Cell Biology" (H. W. Detrich, M. Westerfield, and L. I. Zon, eds.), pp. 179-204. Academic Press, San Diego.
5. Isogai, S., Horiguchi, M., and Weinstein, B. M. (2001). The vascular anatomy of the developing zebrafish: An atlas of embryonic and early larval development. Dev. Biol. 230, 278-301.
6. Piperno, G., and Fuller, M. T. (1985). Monoclonal antibodies specific for an acetylated form of alpha-tubulin recognize the antigen in cilia and flagella from a variety of organisms. J. Cell Biol. 101, 2085-2094.
7. Robinson, C., and Guille, M. (1999). Immunohistochemistry of Xenopus embryos. In "Methods in Molecular Biology" (M. Guille, ed.), pp. 89-97. Humana Press, Totowa, NJ.
8. Schroeder, W., Martin, K., and Lorenson, B. (2003). "The Visualization Toolkit: An Object Oriented Approach to 3D Graphics." Kitware Inc., New York.
9. Sharpe, J., Ahlgren, U., Perry, P., Hill, B., Ross, A., Hecksher-Sorensen, J., Baldock, R., and Davidson, D. (2002). Optical projection tomography as a tool for 3D microscopy and gene expression studies. Science 296, 541-545.
10. Sharpe, J. (2003). Optical projection tomography as a new tool for studying embryo anatomy. J. Anal. 202, 175-181.
11. Streicher, J., Donat, M. A., Strauss, B., Sporle, R., Schughart, K., and Muller, G. B. (2000). Computer-based three-dimensional visualization of developmental gene expression. Nat. Genet. 25, 147-152.
12. Weninger, W. J., and Mohun, T. (2002). Phenotyping transgenic embryos: A rapid 3-D screening method based on episcopic fluorescence image capturing. Nat. Genet. 30, 59-65.
13. Wilson, S. W., and Easter, S. S., Jr. (1991). Stereotyped pathway selection by growth cones of early epiphysial neurons in the embryonic zebrafish. Development 112, 723-746.