Genotyping of Enteric Adenoviruses by Using Single-Stranded Conformation Polymorphism Analysis and Heteroduplex Mobility Assay

Journal of Clinical Microbiology

Volumn 42, Issue 4, 2004, Pages 1723-1726

  Soares, Caroline C ^a   Volotão, Eduardo M ^a   Albuquerque, Maria Carolina M ^a   Nozawa, Carlos M ^b   Linhares, Rosa Elisa C ^b   Volokhov, Dmitriy ^c   Chizhikov, Vladimir ^c   Lu, Xiaoyan ^d   Erdman, Dean ^d   Santos, Norma ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b STATE UNIVERSITY OF LONDRINA   (Brazil)

^c Ctr Biologics Eval Res Food D   (United States)

^d CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOVIRUS; ARTICLE; CONTROLLED STUDY; FECES ANALYSIS; GENETIC ANALYSIS; GENOTYPE; HETERODUPLEX ANALYSIS; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PRESCHOOL CHILD; PRIORITY JOURNAL; RESTRICTION MAPPING; SINGLE STRAND CONFORMATION POLYMORPHISM; VIRAL GENETICS; VIRUS IDENTIFICATION; VIRUS STRAIN;

ADENOVIRUS INFECTIONS, HUMAN; ADENOVIRUSES, HUMAN; BRAZIL; CHILD, PRESCHOOL; DIARRHEA; DNA, VIRAL; FECES; GENOTYPE; HETERODUPLEX ANALYSIS; HUMANS; INFANT; INFANT, NEWBORN; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; POLYMORPHISM, SINGLE-STRANDED CONFORMATIONAL; RESTRICTION MAPPING; SEQUENCE ANALYSIS, DNA;

ADENOVIRIDAE; DNA VIRUSES;

EID: 16544385638     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.42.4.1723-1726.2004     Document Type: Article

References (14)

1. Allard, A., B. Albinsson, and G. Wadell. 2001. Rapid typing of adenoviruses by a general PCR combined with restriction endonuclease analysis. J. Clin. Microbiol. 39:498-505.
2. Arens, M. 1999. Methods for subtyping and molecular comparison of human viral genomes. Clin. Microbiol. Rev. 12:612-626.
3. Barlow, K., J. Green, and J. Clewley. 2000. Viral genome characterization by the heteroduplex mobility and heteroduplex tracking assays. Rev. Med. Virol. 10:321-335.
4. de Jong, J. C., A. G. Wermenbol, M. W. Verweij-Uijterwaal, K. W. Slaterus, P. Wertheim-Van Dillen, G. J. J. Van Doornum, S. H. Khoo, and J. C. Hierholzer. 1999. Adenovirus from human immunodeficiency virus-infected individuals, including two strains that represent new candidate serotypes Ad50 and Ad51 of species B1 and D, respectively. J. Clin. Microbiol. 37:3940-3945.
5. Delwart, E. L., H. W. Sheppard, B. D. Walker, J. Goudsmit, and J. I. Mullins. 1994. Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays. J. Virol. 68:6672-6683.
6. Elnifro, E., R. J. Cooper, P. E. Klapper, and A. Bailey. 2000. PCR and restriction endonuclease analysis for rapid identification of human adenovirus subgenera. J. Clin. Microbiol. 38:2055-2061.
7. Hering, A. J., N. F. Inglis, C. K. Ojhe, D. R. Snodgrass, and J. D. Menzies. 1982. Rapid diagnosis of rotavirus infection by direct detection of a viral nucleic acid in silver-stained polyacrylamide gels. J. Clin. Microbiol. 16:473-477.
8. Heyndrickx, L., W. Janssens, L. Zekeng, R. Musonda, S. Anagonou, G. van der Auwera, S. Coppens, K. Vereecken, K. Witte, R. van Rampelbergh, M. Kahindo, L. Morison, F. McCutchan, J. Carr, J. Albert, M. Essex, J. Goudsmit, B. Asjo, M. Salminen, A. Buvé, and G. Van der Groen. 2000. Simplified strategy for detection of recombinant human immunodeficiency virus type 1 group M isolates by gag/env heteroduplex mobility assay. J. Virol. 74:363-370.
9. Li, Q.-G., A. Henningsson, P. Juto, F. Elgh, and G. Wadell. 1999. Use of restriction fragment analysis and sequencing of a serotype-specific region to type adenovirus isolates. J. Clin. Microbiol. 37:844-847.
10. Shenk, T. 2001. Adenoviridae: the viruses and their replication, p. 2265-2300. In D. M. Knipe, P. M. Howley, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman, and S. E. Straus (ed.), Fields virology, 4th ed. Lippincott Williams & Wilkins, Philadelphia, Pa.
11. Soares, C. C., E. M. Volotão, M. C. M. Albuquerque, F. M. da Silva, T. R. B. de Carvalho, C. M. Nozawa, R. E. Linhares, and N. Santos. 2002. Prevalence of enteric adenoviruses among children with diarrhea in four Brazilian cities. J. Clin. Virol. 23:171-177.
12. Trincado, D., G. Scott, P. White, C. Hunt, L. Rasmussen, and W. Rawlinson. 2000. Human cytomegalovirus strains associated with congenital and perinatal infections. J. Med. Virol. 61:481-487.
13. Xu, W., M. C. McDonough, and D. Erdman. 2000. Species-specific identification of human adenoviruses by a multiplex PCR assay. J. Clin. Microbiol. 38:4114-4120.
14. Zou, S. 1997. A practical approach to genetic screening for influenza virus variants. J. Clin. Microbiol. 35:2623-2627.