Methanogen population in a marine biofilm corrosive to mild steel

Applied Microbiology and Biotechnology

Volumn 63, Issue 1, 2003, Pages 101-106

  Zhang, T ^a   Fang, H H P ^a   Ko, B C B ^a  

^a UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; STEEL; SULFATE;

BIOFILM; COMMUNITY COMPOSITION; CORROSION; METHANOGENIC BACTERIUM; POLYMERASE CHAIN REACTION; STEEL;

ARCHAEBACTERIUM; ARTICLE; BACTERIUM IDENTIFICATION; BIOFILM; CORROSION; DEPOLARIZATION; DNA DETERMINATION; DNA EXTRACTION; FLUORESCENCE IN SITU HYBRIDIZATION; GENE AMPLIFICATION; MARINE ENVIRONMENT; METHANOCALCULUS; METHANOGENIUM; METHANOPLANUS; METHANOSAETA; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SURFACE PROPERTY;

BASE SEQUENCE; BIOFILMS; CLONING, MOLECULAR; DNA, ARCHAEAL; IN SITU HYBRIDIZATION, FLUORESCENCE; METHANOMICROBIALES; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SULFUR-REDUCING BACTERIA;

ARCHAEA; BACTERIA (MICROORGANISMS); METHANOCALCULUS; METHANOGENIUM; METHANOPLANUS; METHANOSAETA; OTUS;

EID: 1642440124     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-003-1396-2     Document Type: Article

References (31)

1. Altschul SF, Gish W, Miller W, Myers E, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Amann RI, Krumholz L, Stahl DA (1990) Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic and environmental studies in microbiology. J Bacteriol 172:762-770
3. Amann RI, Ludwig W, Schleifer K (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169
4. Boopathy R, Daniels L (1991) Effect of pH on anaerobic mild steel corrosion by methanogenic bacteria. Appl Environ Microbiol 57:2104-2108
5. Daniel S, Stephan S (2001) Structure and diversity of Gram-negative sulfate-reducing bacteria on rice roots. FEMS Microbiol Ecol 36:175-183
6. 2 with element iron as the sole source of electrons. Science 237:509-511
7. Felsenstein J (1985) Confidence limits of phylogenies: an approach using the bootstrap. Evolution 39:783-791
8. Giovannoni SJ, Britschgi TB, Moyer CL, Field KG (1990) Genetic diversity in Sargasso Sea bacterioplankton. Nature 345:60-63
9. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp Ser 41:95-98
10. Holt JG, Krieg NR, Sneath PH, Staley JT, Williams ST (1994) Bergey's manual of determinative bacteriology, 9th edn. Williams and Wilkins, Baltimore
11. Kumar S, Tomura K, Nei M (1993) MEGA: molecular evolution genetics analysis, version 1.0, The Pennsylvania State University, Philadelphia, Pa.
12. Lanoil BD, Sassen R, La Duc MT, Sweet ST, Nealson KH (2001) Bacteria and Archaea physically associated with Gulf of Mexico gas hydrates. Appl Environ Microbiol 67:5143-5153
13. Li YY, Lam S, Fang HHP (1996) Interactions between methanogenic, sulfate-reducing and syntrophic acetogenic bacteria in the anaerobic degradation of benzoate. Water Res 30:1555-1562
14. Liu WT, Chan OC, Fang HHP (2002) Characterization of microbial community in granular sludge treating brewery wastewater. Water Res 36:1767-1775
15. Maidak BL, Olsen GJ, Larsen N, Overbeek R, McCaughey MJ, Woese CR (1997) The RDP (Ribosomal Database Project). Nucleic Acid Res 25:109-110
16. McHugh S, Carton M, Mahony T, O'Flaherty V (2003) Methanogenic population structure in a variety of anaerobic bioreactors. FEMS Microbiol Lett 219:297-304
17. Orphan VJ, Taylor LT, Hafenbradl D, Delong EF (2000) Culture-dependent and culture-independent characterization of microbial assemblages associated with high-temperature petroleum reservoirs. Appl Environ Microbiol 66:700-711
18. Raskin L, Stromley JM, Rittmann BR, Stahl DA (1994) Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol 60:1232-1240
19. Raskin L, Rittmann BE, Stahl DA (1996) Competition and coexistence of sulfate-reducing and methanogenic populations in anaerobic biofilms. Appl Environ Microbiol 62:3847-3857
20. Sambrook J, Fritsch EJ, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
21. Sandaa RA, Torsvik V, Enger Ø (2001) Influence of long-term heavy-metal contamination on microbial communities in soil. Soil Biol Biochem 33:287-295
22. Stahl DA, Flesher B, Mansfield HR, Montgomery L (1988) Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl Environ Microbiol 54:1079-1084
23. Teske A, Hinrichs KU, Edgcomb V, de Vera Gomez A, Kysela D, Sylva SP, Sogin ML, Jannasch HW (2002) Microbial diversity of hydrothermal sediments in the Guaymas Basin: evidence for anaerobic methanotrophic communities. Appl Environ Microbiol 68:1994-2007
24. Videla HA (1996) Manual of biocorrosion. Lewis, Boca Raton, Fla., p 252
25. Ward DM, Winfrey MR (1985) Interactions between methanogenic and sulfate-reducing bacteria in sediments. Adv Aquat Microbiol 3:141-179
26. Wilson M, Patel H, Kpendema H, Noar JH, Hunt NP, Mordan NJ (1997) Corrosion of intra-oral magnets by multi-species biofilms in the presence and absence of sucrose. Biomaterials 18:53-57
27. Wolzogen Kuhr CAH von, van der Vlugt IS (1934) The graphitization of cat iron as an electrochemical process in anaerobic solid. Water 18:147-165
28. Xu LC, Fang HHP, Chen KY (1999) Atomic force microscopy study of microbiologically influenced corrosion of mild steel. J Electrochem Soc 146:4455-4460
29. Zengler K, Richnow HH, Rossello-Mora R, Michaelis W, Widdel F (1999) Methane formation from long-chain alkanes by anaerobic microorganisms. Nature 401:266-269
30. Zhang T, Fang HHP (2000) Digitization of DGGE (denaturing gradient gel electrophoresis) profile and cluster analysis of microbial communities. Biotechnol Lett 22:399-405
31. Zhang T, Fang HHP (2001) Phylogenetic diversity of a SRB-rich marine biofilm. Appl Microbiol Biotechnol 57:437-440