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Volumn 47, Issue 7-8, 2003, Pages 695-703

Developmental gene network analysis

Author keywords

Evolution and development; Gene network; Genetic program; Genomic regulatory system; Sea urchin

Indexed keywords

DEVELOPMENT; GENE EXPRESSION; GENETIC ANALYSIS; INFORMATION PROCESSING; MESODERM; MORPHOGENESIS; NONHUMAN; PRIORITY JOURNAL; REGULATOR GENE; REVIEW; SEA URCHIN;

EID: 1642430609     PISSN: 02146282     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review
Times cited : (24)

References (46)
  • 1
    • 0037956844 scopus 로고    scopus 로고
    • Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks
    • in press
    • AMORE, G., YAVROUIAN, R.G., PETERSON, K.J., RANSICK, A., McCLAY, D.R. and DAVIDSON, E.H. (2003). Spdeadringer, a sea urchin embryo gene required separately in skeletogenic and oral ectoderm gene regulatory networks. Dev. Biol., in press.
    • (2003) Dev. Biol.
    • Amore, G.1    Yavrouian, R.G.2    Peterson, K.J.3    Ransick, A.4    Mcclay, D.R.5    Davidson, E.H.6
  • 2
    • 0034066361 scopus 로고    scopus 로고
    • Roles of Hoxa1 and Hoxa2 in patterning the early hindbrain of the mouse
    • BARROW, J., STADLER, H. and CAPECCHI, M. (2000). Roles of Hoxa1 and Hoxa2 in patterning the early hindbrain of the mouse. Development 127: 933-944.
    • (2000) Development , vol.127 , pp. 933-944
    • Barrow, J.1    Stadler, H.2    Capecchi, M.3
  • 3
    • 0032432127 scopus 로고    scopus 로고
    • A new look at evolutionary rates in deep time: Uniting paleontology and high-precision geochronology
    • BOWRING, S. and ERWIN, D. (1998). A new look at evolutionary rates in deep time: Uniting paleontology and high-precision geochronology. GSA Today 8: 2.
    • (1998) GSA Today , vol.8 , pp. 2
    • Bowring, S.1    Erwin, D.2
  • 4
    • 0015070886 scopus 로고
    • Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty
    • BRITTEN, R.J. and DAVIDSON, E.H. (1971). Repetitive and non-repetitive DNA sequences and a speculation on the origins of evolutionary novelty. Quart. Rev. Biol. 46: 111-138.
    • (1971) Quart. Rev. Biol. , vol.46 , pp. 111-138
    • Britten, R.J.1    Davidson, E.H.2
  • 5
    • 0142074399 scopus 로고    scopus 로고
    • Isolation of mesoderm specific genes in the sea urchin embryo by differential macroarray screening
    • in press
    • CALESTANI, C., RAST, J.P. and DAVIDSON, E.H. (2003). Isolation of mesoderm specific genes in the sea urchin embryo by differential macroarray screening. Development 130, in press.
    • (2003) Development , vol.130
    • Calestani, C.1    Rast, J.P.2    Davidson, E.H.3
  • 6
    • 0023301032 scopus 로고
    • Lineage and fate of each blastomere of the eight-cell sea urchin embryo
    • CAMERON, R.A., HOUGH-EVANS, B.R., BRITTEN, R.J. and DAVIDSON, E.H. (1987). Lineage and fate of each blastomere of the eight-cell sea urchin embryo. Genes & Dev. 1: 75-85.
    • (1987) Genes & Dev. , vol.1 , pp. 75-85
    • Cameron, R.A.1    Hough-Evans, B.R.2    Britten, R.J.3    Davidson, E.H.4
  • 8
    • 0034888362 scopus 로고    scopus 로고
    • Ske-T, a T-box gene expressed in the skeletogenic mesenchyme lineage of the sea urchin embryo
    • CROCE, J., LHOMOND, G., LOZANO., J.-C. and GACHE, C. (2001). Ske-T, a T-box gene expressed in the skeletogenic mesenchyme lineage of the sea urchin embryo. Mech. Dev. 107: 159-162.
    • (2001) Mech. Dev. , vol.107 , pp. 159-162
    • Croce, J.1    Lhomond, G.2    Lozano, J.-C.3    Gache, C.4
  • 10
    • 0031697442 scopus 로고    scopus 로고
    • Specification of cell fate in the sea urchin embryo: Summary and some proposed mechanisms
    • DAVIDSON, E.H., CAMERON, R.A. and RANSICK, A. (1998). Specification of cell fate in the sea urchin embryo: Summary and some proposed mechanisms. Development 125: 3269-3290.
    • (1998) Development , vol.125 , pp. 3269-3290
    • Davidson, E.H.1    Cameron, R.A.2    Ransick, A.3
  • 11
    • 0036607698 scopus 로고    scopus 로고
    • A provisional regulatory gene network for specification of endomesoderm and the sea urchin embryo
    • DAVIDSON, E.H. et al. (2002a). A provisional regulatory gene network for specification of endomesoderm and the sea urchin embryo. Dev. Biol. 246: 162-190.
    • (2002) Dev. Biol. , vol.246 , pp. 162-190
    • Davidson, E.H.1
  • 12
    • 0036500609 scopus 로고    scopus 로고
    • A genomic regulatory network for development
    • DAVIDSON, E.H. et al. (2002b). A genomic regulatory network for development. Science 295: 1669-1678.
    • (2002) Science , vol.295 , pp. 1669-1678
    • Davidson, E.H.1
  • 13
    • 0037821924 scopus 로고    scopus 로고
    • Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo
    • ETTENSOHN, C.A., ILLIES, M.R., OLIVERI, P. and DE JONG, D.L. (2003). Alx1, a member of the Cart1/Alx3/Alx4 subfamily of Paired-class homeodomain proteins, is an essential component of the gene network controlling skeletogenic fate specification in the sea urchin embryo. Development 130, 2917-2928.
    • (2003) Development , vol.130 , pp. 2917-2928
    • Ettensohn, C.A.1    Illies, M.R.2    Oliveri, P.3    De Jong, D.L.4
  • 14
    • 18744364157 scopus 로고    scopus 로고
    • T-brain homologue (HpTb) is involved in the archenteron induction signals of micromere descendant cells in the sea urchin embryo
    • FUCHIKAMI, T. etal. (2002). T-brain homologue (HpTb) is involved in the archenteron induction signals of micromere descendant cells in the sea urchin embryo. Development 129: 5205-5216.
    • (2002) Development , vol.129 , pp. 5205-5216
    • Fuchikami, T.1
  • 15
    • 0035504237 scopus 로고    scopus 로고
    • The role of Brachyury (T) during gastrulation movements in the sea urchin Lytechinus variegates
    • GROSS, J.M. and McCLAY, D.R. (2001). The role of Brachyury (T) during gastrulation movements in the sea urchin Lytechinus variegates. Dev. Biol. 239: 132-147.
    • (2001) Dev. Biol. , vol.239 , pp. 132-147
    • Gross, J.M.1    McClay, D.R.2
  • 16
    • 0024240796 scopus 로고
    • A community effect in animal development
    • GURDON, J. (1988). A community effect in animal development. Nature 336: 772-774.
    • (1988) Nature , vol.336 , pp. 772-774
    • Gurdon, J.1
  • 17
    • 0027203375 scopus 로고
    • The community effect, dorsalization and mesoderm induction
    • GURDON, J., KATO, K. and LEMAIRE, P. (1993). The community effect, dorsalization and mesoderm induction. Curr. Opin. Genet. Dev. 3: 662-667.
    • (1993) Curr. Opin. Genet. Dev. , vol.3 , pp. 662-667
    • Gurdon, J.1    Kato, K.2    Lemaire, P.3
  • 18
    • 0344824373 scopus 로고    scopus 로고
    • Developmental gene regulatory network architecture across MYA of echinoderm evolution
    • In press
    • HINMAN, V.F., NGUYEN, A., CAMERON, R.A. and DAVIDSON, E.H. (2003). Developmental gene regulatory network architecture across 500 MYA of echinoderm evolution. Proc. Natl. Acad. Sci. USA (In press).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.500
    • Hinman, V.F.1    Nguyen, A.2    Cameron, R.A.3    Davidson, E.H.4
  • 19
    • 78149412083 scopus 로고
    • The mechanics of sea urchin development, studied by operative methods
    • HÖRSTADIUS, S. (1939). The mechanics of sea urchin development, studied by operative methods. Biol. Rev. Cambridge Philos. Soc. 14: 132-179.
    • (1939) Biol. Rev. Cambridge Philos. Soc. , vol.14 , pp. 132-179
    • Hörstadius, S.1
  • 20
    • 0032926482 scopus 로고    scopus 로고
    • EpEts, an ets-related transcription factor implicated in primary mesenchyme cell differentiation in the sea urchin embryo
    • KUROKAWA, D., KITAJIMA, T., MITSUNAGA-NAKATSUBO, K., AMEMIYA, S., SHIMADA, H. and AKASAKA, K. (1999). EpEts, an ets-related transcription factor implicated in primary mesenchyme cell differentiation in the sea urchin embryo. Mech. Dev. 80: 41-52.
    • (1999) Mech. Dev. , vol.80 , pp. 41-52
    • Kurokawa, D.1    Kitajima, T.2    Mitsunaga-Nakatsubo, K.3    Amemiya, S.4    Shimada, H.5    Akasaka, K.6
  • 21
    • 0030831284 scopus 로고    scopus 로고
    • The allocation of early blastomeres to the ectoderm and endoderm is variable in the sea urchin embryo
    • LOGAN, C.Y. and McCLAY, D.R. (1997). The allocation of early blastomeres to the ectoderm and endoderm is variable in the sea urchin embryo. Development 124: 2213-2223.
    • (1997) Development , vol.124 , pp. 2213-2223
    • Logan, C.Y.1    McClay, D.R.2
  • 22
    • 0032914194 scopus 로고    scopus 로고
    • Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo
    • LOGAN, C.Y., MILLER, J.R., FERKOWICZ, M. and McCLAY, D.R. (1999). Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo. Development 126: 345-357.
    • (1999) Development , vol.126 , pp. 345-357
    • Logan, C.Y.1    Miller, J.R.2    Ferkowicz, M.3    McClay, D.R.4
  • 23
    • 0036061455 scopus 로고    scopus 로고
    • Dynamics of developmental switch: Recursive intracellular and intranuclear redistribution of Caenorhabditis elegans POP-1 parallels Wnt-inhibited transcriptional repression
    • MADURO, M.F., LIN, R. and ROTHMAN, J.H. (2002). Dynamics of developmental switch: Recursive intracellular and intranuclear redistribution of Caenorhabditis elegans POP-1 parallels Wnt-inhibited transcriptional repression. Dev. Biol. 248: 128-142.
    • (2002) Dev. Biol. , vol.248 , pp. 128-142
    • Maduro, M.F.1    Lin, R.2    Rothman, J.H.3
  • 24
    • 0034528229 scopus 로고    scopus 로고
    • A micromere induction signal is activated by beta-catenin and acts through notch to initiate specification of secondary mesenchyme cells in the sea urchin embryo
    • McCLAY, D.R., PETERSON, R., RANGE, R., WINTER-VANN, A. and FERKOWICZ, M. (2000). A micromere induction signal is activated by beta-catenin and acts through notch to initiate specification of secondary mesenchyme cells in the sea urchin embryo. Development 127: 5113-5122.
    • (2000) Development , vol.127 , pp. 5113-5122
    • McClay, D.R.1    Peterson, R.2    Range, R.3    Winter-Vann, A.4    Ferkowicz, M.5
  • 25
    • 13344278018 scopus 로고    scopus 로고
    • Segmental expression of Hoxa-2 in the hindbrain is directly regulated by Krox-20
    • NONCHEV, S. et al. (1996). Segmental expression of Hoxa-2 in the hindbrain is directly regulated by Krox-20. Development 122: 543-554.
    • (1996) Development , vol.122 , pp. 543-554
    • Nonchev, S.1
  • 26
    • 0036607107 scopus 로고    scopus 로고
    • A regulatory gene network that directs micromere specification in the sea urchin embryo
    • OLIVERI, P., CARRICK, D.M. and DAVIDSON, E.H. (2002). A regulatory gene network that directs micromere specification in the sea urchin embryo. Dev. Biol. 246: 209-228.
    • (2002) Dev. Biol. , vol.246 , pp. 209-228
    • Oliveri, P.1    Carrick, D.M.2    Davidson, E.H.3
  • 27
    • 0038022709 scopus 로고    scopus 로고
    • Activation of pmar1 controls specification of micromeres in the sea urchin embryo
    • OLIVERI, P., DAVIDSON, E.H. and McCLAY, D.R. (2003). Activation of pmar1 controls specification of micromeres in the sea urchin embryo. Dev. Biol. 258: 32-43.
    • (2003) Dev. Biol. , vol.258 , pp. 32-43
    • Oliveri, P.1    Davidson, E.H.2    McClay, D.R.3
  • 28
    • 0036668278 scopus 로고    scopus 로고
    • The GATA family (vertebrates and invertebrates)
    • PATIENT, R.K. and McGHEE, J.D. (2002). The GATA family (vertebrates and invertebrates). Curr. Opin. Genet. Dev. 12: 416-422.
    • (2002) Curr. Opin. Genet. Dev. , vol.12 , pp. 416-422
    • Patient, R.K.1    McGhee, J.D.2
  • 29
    • 0027408246 scopus 로고
    • A complete second gut induced by transplanted micromeres in the sea urchin embryo
    • RANSICK, A. and DAVIDSON, E.H. (1993). A complete second gut induced by transplanted micromeres in the sea urchin embryo. Science 259: 1134-1138.
    • (1993) Science , vol.259 , pp. 1134-1138
    • Ransick, A.1    Davidson, E.H.2
  • 30
    • 0028802423 scopus 로고
    • Micromeres are required for normal vegetal plate specification in sea urchin embryos
    • RANSICK, A. and DAVIDSON, E.H. (1995). Micromeres are required for normal vegetal plate specification in sea urchin embryos. Development 121: 3215-3222.
    • (1995) Development , vol.121 , pp. 3215-3222
    • Ransick, A.1    Davidson, E.H.2
  • 31
    • 0032008552 scopus 로고    scopus 로고
    • Late specification of veg1 lineages to endodermal fate in the sea urchin embryo
    • RANSICK, A. and DAVIDSON, E.H. (1998). Late specification of veg1 lineages to endodermal fate in the sea urchin embryo. Dev. Biol. 195: 38-48.
    • (1998) Dev. Biol. , vol.195 , pp. 38-48
    • Ransick, A.1    Davidson, E.H.2
  • 32
    • 0036607585 scopus 로고    scopus 로고
    • New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization
    • RANSICK, A., RAST, J.P., MINOKAWA, T., CALESTANI, C. and DAVIDSON, E.H. (2002). New early zygotic regulators expressed in endomesoderm of sea urchin embryos discovered by differential array hybridization. Dev. Biol. 246: 132-147.
    • (2002) Dev. Biol. , vol.246 , pp. 132-147
    • Ransick, A.1    Rast, J.P.2    Minokawa, T.3    Calestani, C.4    Davidson, E.H.5
  • 33
    • 0034671670 scopus 로고    scopus 로고
    • Recovery of developmentally defined gene sets from high-density cDNA macroarrays
    • RAST, J.P., AMORE, G., CALESTANI, C., LIVI, C.B., RANSICK, A. and DAVIDSON, E.H. (2000). Recovery of developmentally defined gene sets from high-density cDNA macroarrays. Dev. Biol. 228: 270-286.
    • (2000) Dev. Biol. , vol.228 , pp. 270-286
    • Rast, J.P.1    Amore, G.2    Calestani, C.3    Livi, C.B.4    Ransick, A.5    Davidson, E.H.6
  • 34
    • 0036608031 scopus 로고    scopus 로고
    • Brachyury target genes in the early sea urchin embryo isolated by differential macroarray screening
    • RAST, J.P., CAMERON, R.A., POUSTKA, A.J. and DAVIDSON, E. H. (2002). brachyury target genes in the early sea urchin embryo isolated by differential macroarray screening. Dev. Biol. 246: 191-208.
    • (2002) Dev. Biol. , vol.246 , pp. 191-208
    • Rast, J.P.1    Cameron, R.A.2    Poustka, A.J.3    Davidson, E.H.4
  • 35
    • 0028354289 scopus 로고
    • The gene serpent has homeotic properties and specifies endoderm versus ectoderm within the Drosophila gut
    • REUTER, R. (1994). The gene serpent has homeotic properties and specifies endoderm versus ectoderm within the Drosophila gut. Development 120: 1123-1135.
    • (1994) Development , vol.120 , pp. 1123-1135
    • Reuter, R.1
  • 36
    • 0027496453 scopus 로고
    • A clonal analysis of secondary mesenchyme cell fates in the sea urchin embryo
    • RUFFINS, S.W. and ETTENSOHN, C.A. (1993). A clonal analysis of secondary mesenchyme cell fates in the sea urchin embryo. Dev. Biol. 160: 285-288.
    • (1993) Dev. Biol. , vol.160 , pp. 285-288
    • Ruffins, S.W.1    Ettensohn, C.A.2
  • 37
    • 0030068244 scopus 로고    scopus 로고
    • A fate map of the vegetal plate of the sea urchin (Lytechinus variegatus) mesenchyme blastula
    • RUFFINS, S.W. and ETTENSOHN, C.A. (1996). A fate map of the vegetal plate of the sea urchin (Lytechinus variegatus) mesenchyme blastula. Development 122: 253-263.
    • (1996) Development , vol.122 , pp. 253-263
    • Ruffins, S.W.1    Ettensohn, C.A.2
  • 38
    • 0032934519 scopus 로고    scopus 로고
    • LvNotch signaling mediates secondary mesenchyme specification in the sea urchin embryo
    • SHERWOOD, D. and McCLAY, D.R. (1999). LvNotch signaling mediates secondary mesenchyme specification in the sea urchin embryo. Development 126: 1703-1713.
    • (1999) Development , vol.126 , pp. 1703-1713
    • Sherwood, D.1    McClay, D.R.2
  • 41
    • 0033377612 scopus 로고    scopus 로고
    • The role of micromere signaling in Notch activation and mesoderm specification during sea urchin embryogenesis
    • SWEET, H., HODOR, P. and ETTENSOHN, C. (1999). The role of micromere signaling in Notch activation and mesoderm specification during sea urchin embryogenesis. Development 126: 5255-5265.
    • (1999) Development , vol.126 , pp. 5255-5265
    • Sweet, H.1    Hodor, P.2    Ettensohn, C.3
  • 42
    • 0036333533 scopus 로고    scopus 로고
    • LvDelta isa mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties
    • SWEET, H.C., GEHRING, M. and ETTENSOHN, C.A. (2002). LvDelta isa mesoderm-inducing signal in the sea urchin embryo and can endow blastomeres with organizer-like properties. Development 129: 1945-1955.
    • (2002) Development , vol.129 , pp. 1945-1955
    • Sweet, H.C.1    Gehring, M.2    Ettensohn, C.A.3
  • 43
    • 0034656310 scopus 로고    scopus 로고
    • T-Brain expression in the apical organ of hemichordate tornaria larvae suggests its evolutionary link to the vertebrate forebrain
    • TAGAWA, K., HUMPHREYS, T. and SATOH, N. (2000). T-Brain expression in the apical organ of hemichordate tornaria larvae suggests its evolutionary link to the vertebrate forebrain. J. Exp. Zool. 288: 23-31.
    • (2000) J. Exp. Zool. , vol.288 , pp. 23-31
    • Tagawa, K.1    Humphreys, T.2    Satoh, N.3
  • 44
    • 0023875336 scopus 로고
    • The origin of spicule-forming cells in a 'primitive' sea urchin (Eucidaris tribuloides) which appears to lack primary mesenchyme cells
    • WRAY, G. and McCLAY, D.R. (1988). The origin of spicule-forming cells in a 'primitive' sea urchin (Eucidaris tribuloides) which appears to lack primary mesenchyme cells. Development 103: 305-315.
    • (1988) Development , vol.103 , pp. 305-315
    • Wray, G.1    McClay, D.R.2
  • 45
    • 0035094449 scopus 로고    scopus 로고
    • Cis-Regulatory logic in the endo 16 gene: Switching from a specification to a differentiation mode of control
    • YUH, C.-H., BOLOURI, H. and DAVIDSON, E.H. (2001). cis-Regulatory logic in the endo 16 gene: Switching from a specification to a differentiation mode of control. Development 128: 617-629.
    • (2001) Development , vol.128 , pp. 617-629
    • Yuh, C.-H.1    Bolouri, H.2    Davidson, E.H.3
  • 46
    • 0033993558 scopus 로고    scopus 로고
    • Interaction between the bHLH-PAS protein Trachealess and the POU-domain protein Drifter, specifies tracheal cell fates
    • ZELZER, E. and SHILO, B.-Z. (2000). Interaction between the bHLH-PAS protein Trachealess and the POU-domain protein Drifter, specifies tracheal cell fates. Mech. Dev. 91: 163-173.
    • (2000) Mech. Dev. , vol.91 , pp. 163-173
    • Zelzer, E.1    Shilo, B.-Z.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.