A grid-oriented genetic algorithm framework for bioinformatics

New Generation Computing

Volumn 22, Issue 2, 2004, Pages 177-186

  Imade, Hiroaki ^a   Morishita, Ryohei ^a   Ono, Isao ^a   Ono, Norihiko ^a   Okamoto, Masahiro ^b  

^a UNIVERSITY OF TOKUSHIMA   (Japan)

^b KYUSHU UNIVERSITY   (Japan)

Author keywords

Framework; Genetic algorithms; Genetic networks; Grid; Grid oriented genetic algorithms

Indexed keywords

INFORMATION SCIENCE; NATURAL SCIENCES COMPUTING; PROBLEM SOLVING; USABILITY ENGINEERING;

BIOINFORMATICS; GENETIC NETWORKS; GRID-ORIENTED GENETIC ALGORITHM; LIFE SCIENCE;

GENETIC ALGORITHMS;

EID: 1642408469     PISSN: 02883635     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF03040956     Document Type: Article

References (21)

1. Ando, S. and Iba, H., "Inference of Gene Regulatory Model by Genetic Algorithms," Proc. CEC 2001, 2001.
2. BioGrid, http://www.biogrid.jp
3. Foster, I. and Kasseleman, C., "Globus: A Meracomputing Infrastructure Toolkit," IJSA, 1997.
4. Goldberg, D. E., "Genetic Algorithms in Search, Optimization and Machine Learning," Addison-Wesley, 1989.
5. Gorges-Scheluter, M., "ASPARAGOS An Asynchronous Parallel Genetic Optimization Strategy," Proc. 3rd ICGA, pp. 422-427, 1989.
6. Grimshaw, A. S., Wulf, W. A. and the Legion Team, "The Legion Vision of World Wide Computer," Communications of the ACM, 1997
7. Hatakeyama, M., Kimura, S., Naka, T., Kawasaki, T., Yumoto, N., Ichikawa, M., Kim, J., Saito, K., Saeki, M., Sirouzu, M. Yokoyama, S. and Konogaya, A., "A Computational Model on the Modulation of MAPK and Akt Pathways in Heregulin-induced ErbB Signaling," Journal of Biochemistry, 373, 2, pp. 451-463, 2003.
8. Hiroyasu, T., Miki, M., Hamasaki, M. and Tanimura, Y. "A New Model of Distributed Genetic Algorithm for Cluster Systems, Dual Individual DGA," Proc. PDPTA '2000, 1, pp. 477-483, 2000.
9. Konishi, F., Fukuzaki, A., Satou, K., Yamamoto, T., Defago, X. and Konagaya, A., "OBIGrid: A New Computing Platform for Bioniformatic," Genome Informatics, 13, pp. 484-485, 2002.
10. Laszewski, G., Foster, I., Gawor, J., Smith, W. and Tuecke, S., "CoG Kits: A Bridge between Commodity Distributed Computing and High-Performance Grids," in ACM 2000 Java Grande Conf. pp. 97-106, 2000.
11. Lee, C., Park, K., Kim, J., "Hybrid Parallel Evolutionary Algorithms for Constrained Optimization Utilizing PC Clustering," Proc. CEC 2001, 2, pp. 1436-1441, 2001.
12. Miyoshi, F., Nakayama, Y. and Tomita, M., "Estimation of Genetic Networks of the Circadian Rhythm in Cyanobacterium Using the E-Cell System," Genome Informatics, 12, pp. 308-309, 2001.
13. Morishita, R., Imade, H., Ono, I., Ono, N. and Okamoto, M., "Finding Multiple Solutions Based on An Evolutionary Algorithms for inference of Genetic Network by S-system," to be published in Proc. CEC 2003, 2003.
14. North Carolina Bioinformatics Grid, http://www.ncbiogrid.org.
15. Sakamoto, E., and Iba, H., "Inferring a System of Differential Equations for a Gene Regulatory Network by Using Genetic Programming," Proc. CEC 2001, 2001.
16. Sato, H., Yamamura, M. and Kobayashi, S., "Minimal Generation Gap Model for Gas Considering both Exploration and Exploitation," Proc. IIZUKA '96, pp. 494-497, 1996.
17. Savageau, M. A., "Biochemical Systems Analysis: A Stuff of Function and Design in Molecular Biology," Addison-Wesley, Reading, 1976.
18. Tanese, R., "Distributed Genetic Algorithms," Proc. 3rd ICGA, pp. 434-439, 1989.
19. Tanimura, Y., Hiroyasu, T., Miki, M. and Aoi, K., "The System for Evolutionary Computing on the Computational Grid," IASTED 14th Intl. Conf. on Parallel and Distributed Computing and Systems, pp. 39-44, 2002.
20. Tominaga, D., Koga, N. and Okamoto, M., "Efficient Numerical Optimization Algorithm Based on Genetic Algorithm for Inverse Problem," Proc. GECCO 2000, pp. 251-258, 2000.
21. Ueda, T., Koga, N., Ono, I. and Okamoto M., "Efficient Numerical Optimization Technique Based on a Real-coded Genetic Algorithm for Inverse Problem," Proc. AROB '02, 2002.