메뉴 건너뛰기




Volumn 6, Issue , 2002, Pages 1193-1199

Data-Driven Discovery of Protein Function Classifiers: Decision Trees Based on Meme Motifs Outperform Prosite Patterns and Profiles on Peptidase Families

Author keywords

[No Author keywords available]

Indexed keywords

CLASSIFICATION (OF INFORMATION); DATA REDUCTION; DATABASE SYSTEMS; DECISION THEORY; LEARNING ALGORITHMS; MOLECULAR BIOLOGY; MOLECULAR STRUCTURE; OPTIMIZATION; PATTERN RECOGNITION; TREES (MATHEMATICS); X RAY CRYSTALLOGRAPHY;

EID: 1642333036     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (2)

References (26)
  • 1
    • 24844451611 scopus 로고    scopus 로고
    • Data-Driven Generation of Protein Function Classification Rules Based on Sequence Motifs Discovered Using Multiple Alignment From Reduced Alphabet Representations of Protein Sequences
    • Department of Computer Science, Iowa State University
    • Andorf, C., Dobbs, D., and Honavar, V. (2001). Data-Driven Generation of Protein Function Classification Rules Based on Sequence Motifs Discovered Using Multiple Alignment From Reduced Alphabet Representations of Protein Sequences. Technical Report ISU-CS-TR-01-05. Department of Computer Science, Iowa State University.
    • (2001) Technical Report , vol.ISU-CS-TR-01-05
    • Andorf, C.1    Dobbs, D.2    Honavar, V.3
  • 8
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch A., and Apweiler R. (2000). The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28:45-48. (http://www.expasy.ch/sprot/)
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 12
    • 0029016839 scopus 로고
    • The astacin family of metalloendopeptidases
    • Bond,J.S. & Beynon,R.J. (1995) The astacin family of metalloendopeptidases.Protein Sci. 4, 1247-1261.
    • (1995) Protein Sci. , vol.4 , pp. 1247-1261
    • Bond, J.S.1    Beynon, R.J.2
  • 14
    • 0032885388 scopus 로고    scopus 로고
    • Mammalian caspases: Structure, activation, substrates, and functions durng apoptosis
    • Earnshaw, W.C., Martins, L.M., Kaufmann, S.H. (1999) Mammalian caspases: Structure, activation, substrates, and functions durng apoptosis. Annu. Rev. Biochem. 68:383-424.
    • (1999) Annu. Rev. Biochem. , vol.68 , pp. 383-424
    • Earnshaw, W.C.1    Martins, L.M.2    Kaufmann, S.H.3
  • 15
  • 16
    • 0032619577 scopus 로고    scopus 로고
    • A Comparative Analysis of Computational Motif Detection Methods
    • Hudak, J. and McClure, M.A. (1999) A Comparative Analysis of Computational Motif Detection Methods. Pacific Symposium on Biocomputing 4:138-149.
    • (1999) Pacific Symposium on Biocomputing , vol.4 , pp. 138-149
    • Hudak, J.1    McClure, M.A.2
  • 17
    • 0035006162 scopus 로고    scopus 로고
    • The utility of different representations of protein sequence for predicting functional class
    • King, R.D., Karwath, A., Clare, A., Dehaspe, L. (2001) The utility of different representations of protein sequence for predicting functional class. Bioinformatics, 17:445-454.
    • (2001) Bioinformatics , vol.17 , pp. 445-454
    • King, R.D.1    Karwath, A.2    Clare, A.3    Dehaspe, L.4
  • 20
    • 0033967856 scopus 로고    scopus 로고
    • MEROPS: The peptidase database
    • Rawlings, N.D. & Barrett, A.J. (2000) MEROPS: the peptidase database. Nucleic Acids Res. 28, 323-325. (http://www.merops.co.uk/)
    • (2000) Nucleic Acids Res. , vol.28 , pp. 323-325
    • Rawlings, N.D.1    Barrett, A.J.2
  • 21
    • 0032611514 scopus 로고    scopus 로고
    • A Combined Approach for Ab Initio Construction of Low Resolution Protein Tertiary Structures from Sequence
    • Samudrala R., Xia Y., Levitt M., and Huang, E.S. (1999). A Combined Approach for Ab Initio Construction of Low Resolution Protein Tertiary Structures from Sequence. Pacific Symposium on Biocomputing. 4:505-516.
    • (1999) Pacific Symposium on Biocomputing , vol.4 , pp. 505-516
    • Samudrala, R.1    Xia, Y.2    Levitt, M.3    Huang, E.S.4
  • 23
    • 0035075436 scopus 로고    scopus 로고
    • MetaFam: A unified classification of protein families. I. Overview and statistics
    • Silverstein, K.A.T., Shoop, E., Johnson, J.E. and Retzel, E.F. (2001) MetaFam: a unified classification of protein families. I. Overview and statistics. Bioinformatics 17:249-261.
    • (2001) Bioinformatics , vol.17 , pp. 249-261
    • Silverstein, K.A.T.1    Shoop, E.2    Johnson, J.E.3    Retzel, E.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.