-
1
-
-
24844451611
-
Data-Driven Generation of Protein Function Classification Rules Based on Sequence Motifs Discovered Using Multiple Alignment From Reduced Alphabet Representations of Protein Sequences
-
Department of Computer Science, Iowa State University
-
Andorf, C., Dobbs, D., and Honavar, V. (2001). Data-Driven Generation of Protein Function Classification Rules Based on Sequence Motifs Discovered Using Multiple Alignment From Reduced Alphabet Representations of Protein Sequences. Technical Report ISU-CS-TR-01-05. Department of Computer Science, Iowa State University.
-
(2001)
Technical Report
, vol.ISU-CS-TR-01-05
-
-
Andorf, C.1
Dobbs, D.2
Honavar, V.3
-
2
-
-
0035166973
-
The InterPro database, an integrated documentation resource for protein families, domains and functional sites
-
Apweiler, R., Attwood, T.K., Bairoch, A., Bateman, A., Birney, E. Biswas, M., Bucher, P., Cerutti, L., Corpet, F., Croning, M.D.R., Durbin, R., Falquet, L., Fleishchmann, W., Gouzy, J., Hermjakob, H. Hulo, N., Jonassen, I., Kahn, D., Kanapin, A., Karavidopoulou, Y., Lopez, R., Marx, B., Mulder, N.J., Oinn, T.M., Pagni, M., Servant, F., Sigrist, C.J.A., Zdobnov., E.M. (2001) The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29:37-40.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 37-40
-
-
Apweiler, R.1
Attwood, T.K.2
Bairoch, A.3
Bateman, A.4
Birney, E.5
Biswas, M.6
Bucher, P.7
Cerutti, L.8
Corpet, F.9
Croning, M.D.R.10
Durbin, R.11
Falquet, L.12
Fleishchmann, W.13
Gouzy, J.14
Hermjakob, H.15
Hulo, N.16
Jonassen, I.17
Kahn, D.18
Kanapin, A.19
Karavidopoulou, Y.20
Lopez, R.21
Marx, B.22
Mulder, N.J.23
Oinn, T.M.24
Pagni, M.25
Servant, F.26
Sigrist, C.J.A.27
Zdobnov, E.M.28
more..
-
3
-
-
0029099158
-
Eukaryotic methionyl aminopeptidases:two classes of cobalt-dependent enzymes
-
Arfin,S.M., Kendall,R.L., Hall,L., Weaver,L.H., Stewart,A.E.,Matthews,B.W. & Bradshaw,R.A. (1995) Eukaryotic methionyl aminopeptidases:two classes of cobalt-dependent enzymes. Proc. Natl. Acad. Sci. USA 92, 7714-7718.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 7714-7718
-
-
Arfin, S.M.1
Kendall, R.L.2
Hall, L.3
Weaver, L.H.4
Stewart, A.E.5
Matthews, B.W.6
Bradshaw, R.A.7
-
4
-
-
0033957801
-
PRINT-S: The database formerly known as PRINTS
-
Attwood, T.K., Croning, M.D.R., Flower, D.R., Lewis, A.P., Mabey, J.E., Scordis, P., Selley, J., and Wright, W. (2000). PRINT-S: the database formerly known as PRINTS. Nucleic Acids Re., 28:225-227. (http://bioinf.man.ac.uk/dbbrowser/PRINTS/)
-
(2000)
Nucleic Acids Re.
, vol.28
, pp. 225-227
-
-
Attwood, T.K.1
Croning, M.D.R.2
Flower, D.R.3
Lewis, A.P.4
Mabey, J.E.5
Scordis, P.6
Selley, J.7
Wright, W.8
-
5
-
-
0035172240
-
Protein Information Resource: A community resource for expert annotation of protein data
-
Barker, W.C., Garavelli, J.C., Hou, Z., Huang, H., Ledley, R.S., McGarvey, M.P., Mewes, H.W., Orcutt, B.C., Pfeiffer, F., Tsugita, A., Vinayaka, C.R., Xiao, C., Yeh, L.L., and Cathy Wu. (2001). Protein Information Resource: a community resource for expert annotation of protein data. Nucleic Acids Research, 29, 29-32. (http://pir.georgetown.edu/)
-
(2001)
Nucleic Acids Research
, vol.29
, pp. 29-32
-
-
Barker, W.C.1
Garavelli, J.C.2
Hou, Z.3
Huang, H.4
Ledley, R.S.5
McGarvey, M.P.6
Mewes, H.W.7
Orcutt, B.C.8
Pfeiffer, F.9
Tsugita, A.10
Vinayaka, C.R.11
Xiao, C.12
Yeh, L.L.13
Cathy, Wu.14
-
6
-
-
0012190217
-
-
Oxford University Press, Oxford
-
Bailey, T.L., Baker, M.E., Elkan, C.P., and Grundy, W.N. (1999). MEME, MAST, and Meta- MEME: New Tools for Motif Discovery in Protein Sequences. Pattern Discovery in Biomolecular Data. Oxford University Press, Oxford, 30-54.
-
(1999)
MEME, MAST, and Meta- MEME: New Tools for Motif Discovery in Protein Sequences. Pattern Discovery in Biomolecular Data
, pp. 30-54
-
-
Bailey, T.L.1
Baker, M.E.2
Elkan, C.P.3
Grundy, W.N.4
-
7
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
AAAI Press, Menlo Park, California
-
Bailey, T.L., and Elkan, C., (1994). Fitting a mixture model by expectation maximization to discover motifs in biopolymers, Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California.
-
(1994)
Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
8
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch A., and Apweiler R. (2000). The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28:45-48. (http://www.expasy.ch/sprot/)
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
10
-
-
0033976458
-
The Pfam Protein Families Database
-
Bateman A, Birney E, Durbin R, Eddy SR, Howe KL, Sonnhammer ELL. (2000). The Pfam Protein Families Database. Nucleic Acids Res. 28:263-266.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 263-266
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Howe, K.L.5
Sonnhammer, E.L.L.6
-
11
-
-
0033954256
-
The Protein Data Bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., Bourne P.E. (2000). The Protein Data Bank. Nucleic Acids Res. 28:235-242. (http://www.rcsb.org/pdb/)
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
12
-
-
0029016839
-
The astacin family of metalloendopeptidases
-
Bond,J.S. & Beynon,R.J. (1995) The astacin family of metalloendopeptidases.Protein Sci. 4, 1247-1261.
-
(1995)
Protein Sci.
, vol.4
, pp. 1247-1261
-
-
Bond, J.S.1
Beynon, R.J.2
-
13
-
-
0020649886
-
Establishing Homologies in Protein Sequences
-
Dayhoff, M.O., Barker, W.C., and Hunt, L.T. (1983). Establishing Homologies in Protein Sequences. Methods in Enzymology, 91:524.
-
(1983)
Methods in Enzymology
, vol.91
, pp. 524
-
-
Dayhoff, M.O.1
Barker, W.C.2
Hunt, L.T.3
-
14
-
-
0032885388
-
Mammalian caspases: Structure, activation, substrates, and functions durng apoptosis
-
Earnshaw, W.C., Martins, L.M., Kaufmann, S.H. (1999) Mammalian caspases: Structure, activation, substrates, and functions durng apoptosis. Annu. Rev. Biochem. 68:383-424.
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 383-424
-
-
Earnshaw, W.C.1
Martins, L.M.2
Kaufmann, S.H.3
-
15
-
-
0032944238
-
The PROSITE database, its status in 1999
-
Hofmann K., Bucher P., Falquet L., Bairoch A. (1999). The PROSITE database, its status in 1999. Nucleic Acids Res. 27:215-219. (http://www.expasy.ch/prosite/)
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 215-219
-
-
Hofmann, K.1
Bucher, P.2
Falquet, L.3
Bairoch, A.4
-
16
-
-
0032619577
-
A Comparative Analysis of Computational Motif Detection Methods
-
Hudak, J. and McClure, M.A. (1999) A Comparative Analysis of Computational Motif Detection Methods. Pacific Symposium on Biocomputing 4:138-149.
-
(1999)
Pacific Symposium on Biocomputing
, vol.4
, pp. 138-149
-
-
Hudak, J.1
McClure, M.A.2
-
17
-
-
0035006162
-
The utility of different representations of protein sequence for predicting functional class
-
King, R.D., Karwath, A., Clare, A., Dehaspe, L. (2001) The utility of different representations of protein sequence for predicting functional class. Bioinformatics, 17:445-454.
-
(2001)
Bioinformatics
, vol.17
, pp. 445-454
-
-
King, R.D.1
Karwath, A.2
Clare, A.3
Dehaspe, L.4
-
20
-
-
0033967856
-
MEROPS: The peptidase database
-
Rawlings, N.D. & Barrett, A.J. (2000) MEROPS: the peptidase database. Nucleic Acids Res. 28, 323-325. (http://www.merops.co.uk/)
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 323-325
-
-
Rawlings, N.D.1
Barrett, A.J.2
-
21
-
-
0032611514
-
A Combined Approach for Ab Initio Construction of Low Resolution Protein Tertiary Structures from Sequence
-
Samudrala R., Xia Y., Levitt M., and Huang, E.S. (1999). A Combined Approach for Ab Initio Construction of Low Resolution Protein Tertiary Structures from Sequence. Pacific Symposium on Biocomputing. 4:505-516.
-
(1999)
Pacific Symposium on Biocomputing
, vol.4
, pp. 505-516
-
-
Samudrala, R.1
Xia, Y.2
Levitt, M.3
Huang, E.S.4
-
23
-
-
0035075436
-
MetaFam: A unified classification of protein families. I. Overview and statistics
-
Silverstein, K.A.T., Shoop, E., Johnson, J.E. and Retzel, E.F. (2001) MetaFam: a unified classification of protein families. I. Overview and statistics. Bioinformatics 17:249-261.
-
(2001)
Bioinformatics
, vol.17
, pp. 249-261
-
-
Silverstein, K.A.T.1
Shoop, E.2
Johnson, J.E.3
Retzel, E.F.4
-
24
-
-
1842453363
-
Data-Driven Generation of Decision Trees for Motif-Based Assignment of Protein Sequences to Functional Families
-
Wang, D., Wang, X., Honavar, V., and Dobbs, D. (2001). Data-Driven Generation of Decision Trees for Motif-Based Assignment of Protein Sequences to Functional Families. In: Proceedings of the Atlantic Symposium on Computational Biology, Genome Information Systems & Technology.
-
(2001)
Proceedings of the Atlantic Symposium on Computational Biology, Genome Information Systems & Technology
-
-
Wang, D.1
Wang, X.2
Honavar, V.3
Dobbs, D.4
-
25
-
-
24844440568
-
-
Department of Computer Science, Iowa State University
-
Wang, X., Schroeder, D., Dobbs, D., and Honavar, V. (2001b). Data-Driven Discovery of Rules for Protein Function Classification Based On Sequence Motifs: Rules Discovered for Peptidase Families Based on Meme Motifs Outperform Those Based on Prosite Patterns and Profiles Technical Report ISU-CS-TR-01-04. Department of Computer Science, Iowa State University.
-
(2001)
Data-Driven Discovery of Rules for Protein Function Classification Based on Sequence Motifs: Rules Discovered for Peptidase Families Based on Meme Motifs Outperform Those Based on Prosite Patterns and Profiles Technical Report
, vol.ISU-CS-TR-01-04
-
-
Wang, X.1
Schroeder, D.2
Dobbs, D.3
Honavar, V.4
-
26
-
-
0028170376
-
Structure and mechanism of Interleukin-1β converting enzyme
-
Wilson, K.P., Black, J.F., Thomson, J.A., Kim, E.E., Griffith, J.P., Navia, M.A., Murcko, M.A., Chambers, S.P., Aldape, R.A., Raybuck, S.A., and Livingston, D.J. (1994). Structure and mechanism of Interleukin-1β converting enzyme. Nature 370:270-275.
-
(1994)
Nature
, vol.370
, pp. 270-275
-
-
Wilson, K.P.1
Black, J.F.2
Thomson, J.A.3
Kim, E.E.4
Griffith, J.P.5
Navia, M.A.6
Murcko, M.A.7
Chambers, S.P.8
Aldape, R.A.9
Raybuck, S.A.10
Livingston, D.J.11
|