Was it there? dealing with imperfect detection for species presence/absence data

Australian and New Zealand Journal of Statistics

Volumn 47, Issue 1, 2005, Pages 65-74

  Mackenzie, Darryl I ^a  

^a Proteus Wildlife Research Consultants   (New Zealand)

Author keywords

Ambystoma tigrinum; Colonization; Detection; Local extinction; Occupancy; Presence absence; Tiger salamander

Indexed keywords

EID: 16244387320     PISSN: 13691473     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1467-842X.2005.00372.x     Document Type: Article

References (24)

1. AZUMA, D.L., BALDWIN, J.A. & NOON, B.R. (1990). Estimating the Occupancy of Spotted Owl Habitat Areas by Sampling and Adjusting Bias. USDA Forest Service General Technical Report PSW-124.
2. CONNOR, E.F. & SIMBERLOFF, D. (1979). The assembly of species communities: chance or competition? Ecology 60, 1132-1140.
3. CONNOR, E.F. & SIMBERLOFF, D. (1983). Interspecific competition and species co-occurrence patterns on islands: null models and the evaluation of evidence. Oikos 41, 455-465.
4. GEISSLER, P.H. & FULLER, M.R. (1987). Estimation of the proportion of area occupied by an animal species. In Proceedings of the Section on Survey Research Methods of the American Statistical Association 1986, pp.533-538.
5. GILPIN, M.E. & DIAMOND, J.M. (1982). Factors contributing to nonrandomness in species co-occurrences on islands. Oecologia 52, 75-84.
6. GILPIN, M.E. & DIAMOND, J.M. (1984). Are species co-occurrences on islands non-random, and are null hypotheses useful in community ecology. In Ecological Communities: Conceptual Issues and Evidence, eds D.R. Strong, Jr, D. Simberloff, L.G. Abele & A.B. Thistle, pp.297-315. Princeton, NJ: Princeton University Press.
7. GOTELLI, N.J. (2000). Null model analysis of species co-occurrence patterns. Ecology 81, 2606-2621.
8. GOTELLI, N.J. & MCCABE, D.J. (2002). Species co-occurrence: a meta-analysis of J.M. Diamond's assembly rules model. Ecology 83, 2091-2096.
9. HANSKI, I. (1992). Inferences from ecological incidence functions. American Naturalist 139, 657-662.
10. HANSKI, I. (1994). A practical model of metapopulation dynamics. J. Animal Ecology 63, 151-162.
11. HANSKI, I. ( 1997). Metapopulation dynamics: from concepts and observations to predictive models. In Metapopulation Biology: Ecology, Genetics, and Evolution, eds I. A. Hanski & M.E. Gilpin, pp. 69-91. New York: Academic Press.
12. KELT, D.A., TAPER, M.L. & MESEVRE, P.L. (1995). Assesing the impact of competition on community assembly: a case study using small mammals. Ecology 76, 1283-1296.
13. KENDALL, W.L. (1999). Robustness of closed capture-recapture methods to violations of the closure assumption. Ecology 80, 2517-2525.
14. MACKENZIE, D.I., BAILEY, L.L. & NICHOLS, J.D. (2004). Investigating species co-occurrence patterns when species are detected imperfectly. J. Animal Ecology 73, 546-555.
15. MACKENZIE, D.I., NICHOLS, J.D., HINES, J.E., KNUTSON, M.G. & FRANKLIN, A.D. (2003). Estimating site occupancy, colonization and local extinction probabilities when a species is not detected with certainty. Ecology 84, 2200-2207.
16. MACKENZIE, D.I., NICHOLS, J.D., LACHMAN, G.B., DROEGE, S., ROYLE, J.A. & LANGTIMM, C.A. (2002). Estimating site occupancy rates when detection probabilities are less than one. Ecology 83, 2248-2255.
17. MANLY, B.F.J. (1995). A note on the analysis of species co-occurences. Ecology 76, 1109-1115.
18. MOILANEN, A. (1999). Patch occupancy models of metapopulation dynamics: efficient parameter estimation using implicit statistical inference. Ecology 80, 1031-1043.
19. MOILANEN, A. (2002). Implications of empirical data quality for metapopulation model parameter estimation and application. Oikos 96, 516-530.
20. NORRIS, J.L. & POLLOCK, K.H. (1996). Nonparametric MLE under two closed capture-recapture models with heterogeneity. Biometrics 52, 639-649.
21. PLEDGER, S. (2000). Unified maximum likelihood estimates for closed capture-recapture models using mixtures. Biometrics 56, 434-442.
22. POLLOCK, K.H., NICHOLS, J.D., BROWNIE, C. & HINES, J.E. (1990). Statistical inference for capture-recapture experiments. Wildlife Monographs 107.
23. ROYLE, J.A. & NICHOLS, J.D. (2003). Estimating abundance for repeated presence absence data or point counts. Ecology 84, 777-790.
24. TYRE, A.J., TENHUMBERG, B., FIELD, S.A., NIEJALKE, D., PARRIS, K. & POSSINGHAM, H.P. (2003). Improving precision and reducing bias in biological surveys by estimating false negative error rates in presence-absence data. Ecological Applications 13, 1790-1801.