Subfamily hmms in functional genomics

Proceedings of the Pacific Symposium on Biocomputing 2005, PSB 2005

Volumn , Issue , 2005, Pages 322-333

  Brown, Duncan ^a   Krishnamurthy, Nandini ^a   Dale, Joseph M ^a   Christopher, Wayne ^a   Sjolander, Kimmen ^a  

^a University of California at Berkeley   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DATABASE ANNOTATION; DOMAIN STRUCTURE; EXPECTED ERROR RATES; FUNCTIONAL CLASSIFICATION; FUNCTIONAL GENOMICS; GENE DUPLICATIONS; HIGH-THROUGHPUT; MODEL PROTEINS; MOLECULAR FUNCTION; PROTEIN FUNCTIONS; SEROTONIN RECEPTORS;

GENES;

PROTEINS;

ENZYME; PROTEIN;

ANIMAL; ARTICLE; BAYES THEOREM; BIOLOGICAL MODEL; CHEMISTRY; EVOLUTION; GENE DUPLICATION; GENETICS; GENOMICS; NUCLEIC ACID DATABASE; PHYLOGENY; PROBABILITY; PROTEIN DATABASE; SEQUENCE ALIGNMENT;

ANIMALS; BAYES THEOREM; DATABASES, NUCLEIC ACID; DATABASES, PROTEIN; ENZYMES; EVOLUTION; GENE DUPLICATION; GENOMICS; MARKOV CHAINS; MODELS, GENETIC; PHYLOGENY; PROTEINS; SEQUENCE ALIGNMENT;

EID: 15944408886     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (20)

1. M. Y. Galperin, E. V. Koonin, In Silico Biol 1, 55 (1998).
2. J. A. Eisen, Genome Res 8, 163 (Mar, 1998).
3. K. Sjolander, Bioinformatics (2004).
4. S. E. Brenner, Trends Genet 15, 132 (Apr, 1999).
5. J. Park et al., J Mol Biol 284, 1201 (Dec 11, 1998).
6. J. A. Eisen, C. M. Fraser, Science 300, 1706 (Jun 13, 2003).
7. J. C. Venter et al, Science 291, 1304 (Feb 16, 2001).
8. K. Sjolander, Proc Int Conflntell Syst Mol Biol 6, 165 (1998).
9. K. Sjolander et al, Comput Appl Biosci 12, 327 (Aug, 1996).
10. A. Gaulton, T. K. Attwood, Curr Opin Pharmacol 3, 114 (Apr, 2003).
11. R. C. Edgar, Nucleic Acids Res 32, 1792 (2004).
12. J. Felsenstein. (2003).
13. A. Bateman et al, Nucleic Acids Res 30, 276 (Jan 1, 2002).
14. L. Lo Conte et alt Nucleic Acids Res 28, 257 (Jan 1, 2000).
15. R. Hughey et al., "Sequence Alignment and Modeling Software System" Tech. Report No. UCSC-CRL-99-11 (2000).
16. S. E. Brenner, P. Koehl, M. Levitt, Nucleic Acids Res 28, 254 (Jan 1, 2000).
17. T. J. Hubbard, B. Ailcy, S. E. Brenner, A. G. Murzin, C. Chothia, Nucleic Acids Res 27, 254 (Jan 1, 1999).
18. J. Gough, C. Chothia, Nucleic Acids Res 30, 268 (Jan 1, 2002).
19. L. Lo Conte, S. E. Brenner, T. J. Hubbard, C. Chothia, A. G. Murzin, Nucleic Acids Res 30, 264 (Jan 1, 2002).
20. R. E. Green, S. E. Brenner, Proc. IEEE. 9, 1834 (2002).