Developing the use of mismatch binding proteins for discovering rare somatic mutations

Molecular and Cellular Probes

Volumn 19, Issue 3, 2005, Pages 163-168

  Baum, Larry ^a   Ng, Alex ^a   Leung, Wai Keung ^a  

^a CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

Enrichment; Heteroduplex; MutS; Oligonucleotide

Indexed keywords

BINDING PROTEIN; HETERODUPLEX; HYBRID PROTEIN; MALTOSE BINDING PROTEIN; MISMATCH BINDING PROTEIN; OLIGONUCLEOTIDE; UNCLASSIFIED DRUG;

ARTICLE; CANCER SCREENING; DIAGNOSTIC VALUE; DNA SEQUENCE; GENE DELETION; GENETIC COMPLEMENTATION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN PURIFICATION; PROTEIN SYNTHESIS; SOMATIC MUTATION;

EID: 15944367458     PISSN: 08908508     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.mcp.2004.11.001     Document Type: Article

References (12)

1. G. Traverso, A. Shuber, B. Levin, C. Johnson, L. Olsson, and D.J. Schoetz Jr Detection of APC mutations in fecal DNA from patients with colorectal tumors N Engl J Med 346 2002 311 320
2. A.S. Kim, and W.G. Thilly Ligation of high-melting-temperature clamp sequence extends the scanning range of rare point-mutational analysis by constant denaturant capillary electrophoresis (CDCE) to most of the human genome Nucleic Acids Res 31 16 2003 e97
3. M.J. Schofield, and P. Hsieh DNA mismatch repair: molecular mechanisms and biological function Annu Rev Microbiol 57 2003 579 608
4. I. Biswas, and P. Hsieh Identification and characterization of a thermostable MutS homolog from Thermus aquaticus J Biol Chem 271 1996 5040 5048
5. I. Biswas, C. Ban, K.G. Fleming, J. Qin, J.W. Lary, and D.A. Yphantis Oligomerization of a MutS mismatch repair protein from Thermus aquaticus J Biol Chem 274 1999 23673 23678
6. J. Brown, T. Brown, and K.R. Fox Affinity of mismatch-binding protein MutS for heteroduplexes containing different mismatches Biochem J 354 2001 627 633
7. M.J. Schofield, F.E. Brownewell, S. Nayak, C. Du, E.T. Kool, and P. Hsieh The Phe-X-Glu DNA binding motif of MutS: the role of hydrogen bonding in mismatch recognition J Biol Chem 276 2001 45505 45508
8. M. Beaulieu, G.P. Larson, L. Geller, S.D. Flanagan, and T.G. Krontiris PCR candidate region mismatch scanning: adaptation to quantitative, high-throughput genotyping Nucleic Acids Res 29 2001 1114 1124
9. L.J. Blackwell, K.P. Bjornson, D.J. Allen, and P. Modrich Distinct MutS DNA-binding modes that are differentially modulated by ATP binding and hydrolysis J Biol Chem 276 2001 34339 34347
10. J. Temsamani, M. Kubert, and S. Agrawal Sequence identity of the n-1 product of a synthetic oligonucleotide Nucleic Acids Res 23 1995 1841 1844
11. S.P. Hussain, and C.C. Harris p53 mutation spectrum and load: the generation of hypotheses linking the exposure of endogenous or exogenous carcinogens to human cancer Mutat Res 428 1999 23 32
12. A. Lishanski, E.A. Ostrander, and J. Rine Mutation detection by mismatch binding protein, MutS, in amplified DNA: Application to the cystic fibrosis gene Proc Natl Acad Sci USA 91 1994 2674 2678