DNAFSMiner: A web-based software toolbox to recognize two types of functional sites in DNA sequences

Bioinformatics

Volumn 21, Issue 5, 2005, Pages 671-673

  Liu, Huiqing ^a   Han, Hao ^a   Li, Jinyan ^a   Wong, Limsoon ^a  

^a INSTITUTE FOR INFOCOMM RESEARCH   (Singapore)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; MESSENGER RNA;

ACCURACY; ANALYTIC METHOD; ARTICLE; CHROMOSOME ANALYSIS; COMPUTER INTERFACE; COMPUTER PROGRAM; DNA SEQUENCE; GENE IDENTIFICATION; HUMAN; MATHEMATICAL COMPUTING; NUCLEOTIDE SEQUENCE; POLYADENYLATION; PRIORITY JOURNAL; RNA SEQUENCE; SENSITIVITY AND SPECIFICITY; TRANSLATION INITIATION;

VERTEBRATA;

EID: 15844416497     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth437     Document Type: Article

References (7)

1. Kozak,M. (1987) An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs. Nucleic Acids Res., 15, 8125-8148.
2. Legendre,M. and Gautheret,D. (2003) Sequence determinants in human polyadenylation site selection. BMC Genomics, 4, 7.
3. Liu,H., Han,H., Li,J. and Wong,L. (2003) An in-silico method for prediction of polyadenylation signals in human sequences. Proceedings of 14th International Conference on Genome Informatics (GIW 2003), pp. 84-93.
4. Liu,H., Han,H., Li,J. and Wong,L. (2004) Using amino acid patterns to accurately predict translation initiation sites. In-Silico Biol., 4, 0022, http://www.bioinfo.de/isb/2004/04/0022/.
5. Liu,H. and Wong,L. (2003) Data mining tools for biological sequences. J. Bioinform. Comput. Biol., 1, 139-168.
6. Salamov,A.A., Nishikawa,T. and Swindells,M.A. (1998) Assessing protein coding region integrity in cDNA sequencing projects. Bioinformatics, 14, 384-390.
7. Tabaska,J.E. and Zhang,M.Q. (1999) Detection of polyadenylation signals in human DNA sequences, Gene, 231, 77-86.