Persistence of the chromosome end regions at low copy number in mutant strains of Streptomyces rimosus and Streptomyces lividans

Food Technology and Biotechnology

Volumn 43, Issue 1, 2005, Pages 9-17

  Denapaite, Dalia ^a   Radičević, Andrea Paravić ^a,b   Čajavec, Branka ^a,c,d   Hunter, Iain ^c   Hranueli, Daslav ^b,e   Cullum, John ^a  

^a Rheinland Pfälzische Technische Universität Kaiserslautern Landau   (Germany)

^b PLIVA CROATIA LTD   (Croatia)

^c UNIVERSITY OF STRATHCLYDE   (United Kingdom)

^d HUMBOLDT UNIVERSITY   (Germany)

^e UNIVERSITY OF ZAGREB   (Croatia)

Author keywords

Deleted DNA; Linear chromosome; Linear plasmid; Reversion; Streptomyces

Indexed keywords

DELETED DNA; LINEAR CHROMOSOME; LINEAR PLASMID; REVERSION; STREPTOMYES;

ANTIBIOTICS; BACTERIA; BIOSYNTHESIS; CONTAMINATION; DNA; ELECTROPHORESIS; GELS; MUTAGENS; RATE CONSTANTS;

CHROMOSOMES;

BACTERIA (MICROORGANISMS); STREPTOMYCES; STREPTOMYCES LIVIDANS; STREPTOMYCES RIMOSUS; STREPTOMYCETACEAE; STREPTOMYCINEAE;

EID: 15844398288     PISSN: 13309862     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (34)

1. K. Flärdh, K.C. Findlay, K.F. Chater, Association of early sporulation genes with suggested developmental decision points in Streptomyces coelicolor A3(2), Microbiology, 145 (1999) 2229-2243.
2. C.W. Chen, C.H. Huang, H.H. Lee, H.H. Tsai, R. Kirby, Once the circle has been broken: Dynamics and evolution of Streptomyces chromosomes, Trends Genet. 18 (2002) 522-529.
3. G. Fischer, T. Wenner, B. Decaris, P. Leblond, Chromosomal arm replacement generates a high level of intraspecific polymorphism in the terminal inverted repeats of the linear chromosomal DNA of Streptomyces ambofaciens, Proc. Natl. Acad. Sci. USA, 95 (1998) 14296-14301.
4. K. Pandza, G. Pfalzer, J. Cullum, D. Hranueli, Physical mapping shows that the unstable oxytetracycline gene cluster of Streptomyces rimosus lies close to one end of the linear chromosome, Microbiology, 143 (1997) 1493-1501.
5. J.N. Volff, J. Altenbuchner, Genetic instability of the Streptomyces chromosome, Mol. Microbiol. 27 (1998) 239-246.
6. B. Gravius, T. Bezmalinović, D. Hranueli, J. Cullum, Genetic instability and strain degeneration in Streptomyces rimosus, Appl. Environ. Microbiol. 59 (1993) 2220-2228.
7. D. Hranueli, N. Perić, H. Petković, G. Biuković, Z. Toman, J. Pigac, B. Borovička, A. Bago, I. Crnolatac, T. Maršić, L. Zhou, S. Matošić, P.G. Waterman, J. Cullum, I.S. Hunter, Novel hybrid polyketide compounds produced by genetic engineering of the oxytetracycline biosynthetic pathway, Food Technol. Biotechnol. 37 (1999) 117-125.
8. Y.-S. Lin, H.M. Kieser, D.A. Hopwood, C.W. Chen, The chromosomal DNA of Streptomyces lividans 66 is linear, Mol. Microbiol. 10 (1993) 923-933.
9. M. Redenbach, H.M. Kieser, D. Denapaite, A. Eichner, J. Cullum, H. Kinashi, D.A. Hopwood, A set of ordered cosmids and a detailed genetic and physical map of the 8 Mb Streptomyces coelicolor A3(2) chromosome, Mol. Microbiol. 21 (1996) 77-96.
10. K. Bao, S.N. Cohen, Terminal proteins essential for the replication of linear plasmids and chromosomes in Streptomyces, Genes Dev. 15 (2001) 1518-1527.
11. A. Arnold, Ph. D. Thesis, University of Kaiserslautern, Germany (1994).
12. M. Redenbach, A. Arnold, U. Rauland, J.A. Cullum, Structural instability of the Streptomyces lividans 66 chromosome and related effects, Actinomycetologica, 8 (1994) 97-102.
13. N.D. Lomovskaya, N.M. Mkrtumian, N.L. Gostimskaya, V.N. Danilenko, Characterization of temperate actinophage φC31 isolated from Streptomyces coelicolor A3(2), J. Virol. 9 (1972) 258-262.
14. M.J. Butler, E.J. Friend, I.S. Hunter, P.S. Kaczmarek, D.A. Sugden, M. Warren, Molecular cloning of resistance gene and architecture of a linked gene cluster involved in the biosynthesis of tetracycline by Streptomyces rimosus, Mol. Gen. Genet. 215 (1989) 231-238.
15. J. Altenbuchner, J. Cullum, DNA amplification and an unstable arginine gene in Streptomyces lividans 66, Mol. Gen. Genet. 195 (1984) 134-138.
16. D. Hranueli J. Pigac, M. Vešligaj, Characterization and persistence of actinophage RP2 isolated from Streptomyces rimosus ATCC 10970, J. Gen. Microbiol. 114 (1979) 295-303.
17. M. Vešligaj, M. Filipović, J. Pigac, D. Hranueli, Isolation of Streptomyces rimosus mutants with reduced actinophage susceptibility, Appl. Environ. Microbiol. 41 (1981) 986-991.
18. M. Redenbach, F. Flett, W. Piendl, I. Glocker, U. Rauland, O. Wafzig, R. Kliem, P. Leblond, J. Cullum, The Streptomyces lividans chromosome contains a 1 Mb deletogenic region flanked by two amplifiable regions, Mol. Gen. Genet. 241 (1993) 255-262.
19. M. Bierman, R. Logan, K. O'Brien, E.T. Seno, R.N. Rao, B.E. Schoner, Plasmid cloning vectors for the conjugal transfer of DNA from Escherichia coli to Streptomyces spp., Gene, 116 (1992) 43-49.
20. E. Katz, C.J. Thompson, D.A. Hopwood, Cloning and expression of the tyrosinase gene from Streptomyces antibioiticus in Streptomyces lividans, J. Gen. Microbiol. 129 (1983) 2703-2714.
21. T. Kieser, M.J. Bibb, M.J. Buttner, D.A. Hopwood: Practical Streptomyces Genetics, The John Innes Foundation, Norwich, UK (2000).
22. J. Sambrook, E.F. Fritsch, T. Maniatis: Molecular Cloning: A Laboratory Manual (2nd ed.), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY (1989).
23. A.J. Kutchma, M.A. Roberts, D.B. Knaebel, D.L. Crawford, Small-scale isolation of genomic DNA from Streptomyces mycelia or spores, Biotechniques, 24 (1998) 452-456.
24. G.E. Smith, M.D. Summers, The bidirectional transfer of DNA and RNA to nitrocellulose or diazobenzyloxymethyl paper, Anal. Biochem. 109 (1980) 123-129.
25. A.P. Feinberg, B. Vogelstein, A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity, Anal. Biochem. 132 (1983) 6-13.
26. G.A. Evans, K. Lewis, B.E. Rothenberg, High efficiency vectors for cosmid microcloning and genomic analysis, Gene, 79 (1989) 9-20.
27. P. Leblond, M. Redenbach, M.J. Cullum, Physical map of the Streptomyces lividans 66 genome and comparison with that of the related strain Streptomyces coelicolor A3(2), J. Bacterial. 175 (1993) 3422-3429.
28. J. Cullum, D. Denapaite, L.-I. Horvat, T. Maršić, A. Paravić, D. Hranueli, I. Hunter: Genetic Instability and the Biotechnology of Streptomyces. In: Current Studies of Biotechnology, Vol. 1 - Biomedicine, Z. Kniewald, I. Friganović, J. Kniewald, S. Novak, W. Schönfeld, V. Silobrčić, R. Spaventi, B. Šimić, B. Zamola (Eds.), Croatian Society of Biotechnology, Zagreb (2000) pp. 7-13.
29. T. Wenner, V. Roth, G. Fischer, C. Fourrier, B. Aigle, B. Decaris, P. Leblond, End-to-end fusion of linear deleted chromosomes initiates a cycle of genome instability in Streptomyces ambofaciens, Mol. Microbiol. 50 (2003) 411-425.
30. T.J. Leach, R.L. Glaser, Quantitative hybridisation to genomic DNA fractionated by pulsed-field gel electrophoresis, Nucleic Acids Res. 26 (1998) 4787-4789.
31. C.-H. Huang, Y.-S. Lin, Y.-L. Yang, S.-W. Huang, C.W. Chen, The telomeres of Streptomyces chromosomes contain conserved palindromic sequences with potential to form complex secondary structures, Mol. Microbiol. 28 (1998) 905-926.
32. Z. Qin, S.N. Cohen, Replication at the telomeres of the Streptomyces linear plasmid pSLA2, Mol. Microbiol. 28 (1998) 893-903.
33. M. Salas, Protein-priming of DNA replication, Ann. Rev. Biochem. 60 (1991) 39-71.
34. S.T. Williams, M. Goodfellow, E.M. Wellington, J.C. Vickers, G. Alderson, P.H. Sneath, M.J. Sackin, A.M. Mortimer, A probability matrix for identification of some Streptomycetes, J. Gen. Microbiol. 129 (1983) 1815-1830.