The gene ontology categorizer

Bioinformatics

Volumn 20, Issue SUPPL. 1, 2004, Pages

  Joslyn, Cliff A ^a   Mniszewski, Susan M ^a   Fulmer, Andy ^b   Heaton, Gary ^c  

^a LOS ALAMOS NATIONAL LABORATORY   (United States)

^b Miami Valley Labs ^*  (United States)

^c PROCTER AND GAMBLE COMPANY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BIOINFORMATICS; BIOLOGY; CONFERENCE PAPER; GENE; GENE CLUSTER; GENE EXPRESSION; PRIORITY JOURNAL; TAXONOMY; VALIDATION PROCESS;

EID: 15544388510     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth921     Document Type: Conference Paper

References (12)

1. Gene Ontology Consortium (2000) Gene Ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
2. Joslyn, C.A., Mniszewski, S.M., Fulmer, A.W. and Heaton, G.G. (2003a) Measures on ontological spaces of biological function. poster. PSB'03. Kauai, HA, January, 2003.
3. Joslyn, C.A., Mniszewski, S.M., Fulmer, A.W. and Heaton, G.G. (2003b) Structural classification in the Gene Ontology. Proceedings of the 6th Bio-Ontologies Workshop on International Society for Computational Biology (ISMB'03). Brisbane, QLD, 20 June.
4. Joslyn, C.A. (2004) Poset ontologies and concept lattices as semantic hierarchies, lecture notes in artificial intelligence, Springer-Verlag, in press.
5. Joslyn, C.A. and Mniszewski, S.M. (2004) Combinatorial approaches to bio-ontology management with large partially ordered sets. SIAM Workshop on Combinatorial Scientific Computing, San Francisco, CA, April 2004. Society for Industrial and Applied Mathematics.
6. Lee, I.Y., Ho, J.M. and Lin, W.C. (2003) An algorithm for generating representative functional annotations based on gene ontology. 14th IEEE International Workshop on Database and Expert System Applications. pp. 10-15.
7. Lee, S.G., Hur, J.U. and Kim, Y.S. (2004) A graph-theoretic modeling of GO space for biological interpretation of gene clusters. Bioinformatics, 20, 381-388.
8. Lord, P.W., Stevens, R., Brass, A. and Goble, C. (2003) Investigating semantic similarity measures across the gene ontology: the relationship between sequence and annotation. Bioinformatics, 10, 1275-1283.
9. Schröder, B.S.W. (2003) Ordered Sets. Birkhauser, Boston.
10. Verspoor, K., Joslyn, C.A. and Papcun, G. (2003) 'Gene Ontology as a source of lexical semantic knowledge for a biological natural language processing application. In Workshop on Text Analysis and Search for Bioinformatics (SIGIR 03), Tronto, Canada, August 2003.
11. Verspoor, K., Cohn, J., Joslyn, C.A., Mniszewski, S.M., Rechtsteiner, A., Rocha, L.M. and Simas, T. (2004) Protein annotation as term categorization in the Gene Ontology. In Proceedings BioCreative Workshop, Granada, 2004.
12. Zeeberg, B.R., Feng, W., Wang, G., Wang, M.D., Fojo, A.T., Sunshine, M. Narashimhan, S., Kane, D.W., Reinhold, W.C., Labadridi, S. et al. (2003) GoMiner: a resource for biological interpretation of genomic and proteomic data. Genome Biol., 4, R28.