Modeling a description logic vocabulary for cancer research

Journal of Biomedical Informatics

Volumn 38, Issue 2, 2005, Pages 114-129

  Hartel, Frank W ^a   De Coronado, Sherri ^a   Dionne, Robert ^b   Fragoso, Gilberto ^a   Golbeck, Jennifer ^c  

^a NATIONAL CANCER INSTITUTE   (United States)

^b APELON INC   (United States)

^c University of Maryland ^*  (United States)

Author keywords

Biomedical vocabulary; Cancer research; Description logic; Ontology development; OWL; T Box model

Indexed keywords

BIOMEDICAL ENGINEERING; COMPUTER SIMULATION; ENGINEERING RESEARCH; MATHEMATICAL MODELS; THESAURI; TUMORS; WORLD WIDE WEB;

BIOMEDICAL VOCABULARIES; CANCER RESEARCH; LOGIC VOCABULARY; ONTOLOGY;

LINGUISTICS;

ARTICLE; ARTIFACT; CANCER RESEARCH; COMPUTER LANGUAGE; EXPERT SYSTEM; INTERNET; MEDICAL INFORMATICS; METHODOLOGY; MODEL; NOMENCLATURE; PRIORITY JOURNAL;

ANIMALS; DATABASE MANAGEMENT SYSTEMS; DATABASES, FACTUAL; DICTIONARIES; HUMANS; INFORMATION STORAGE AND RETRIEVAL; MEDICAL ONCOLOGY; MODELS, THEORETICAL; NATURAL LANGUAGE PROCESSING; NEOPLASMS; RESEARCH; TERMINOLOGY; VOCABULARY, CONTROLLED;

EID: 15544361895     PISSN: 15320464     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jbi.2004.09.001     Document Type: Article

References (27)

1. D. Nardi, and J. Brachman An introduction to description logics F. Baader D. Calvanese D. McGuinness D. Nardi P. Patel-Schnider The description logic handbook 2003 Cambridge Press Cambridge 1 40
2. de Coronado S, Haber MW, Sioutos N, Tuttle MS, Wright LW: NCI Thesaurus: using science based terminology to integrate cancer research results. Proceeding of the 11th World Congress on Medical Informatics (Medinfo 2004) 2004, P. 33-7
3. Hartel FW, Fragoso G, Ong K, Dionne R. Enhancing quality of retrieval through concept edit history. In: Musen M, editor. Biomedical and health informatics: from foundations to applications. Proceedings/AMIA; 2003
4. P. Covitz, F.W. Hartel, C. Schaefer, S. de Coronado, G. Fragoso, and H. Sahni caCORE: A common infrastructure for cancer informatics Bioinformatics 19 2003 2402 2412
5. J. Golbeck, G. Fragoso, F.W. Hartel, J. Hendler, J. Oberthaler, and B. Parsia The National Cancer Institute's Thesaurus and Ontology J Web Semantics 1 2003 75 80
6. S.J. Nelson, M.S. Tuttle, W.G. Cole, D. Sherertz, W.D. Sperzel, and M.S. Erlbaum From meaning to term: semantic locality in the UMLS Metathesaurus Proc Annu Symp Comput Appl Med Care 1991 209 213
7. F. Baader, and W. Nutt Basic description logics F. Baader D. Calvanese D. McGuinness D. Nardi P. Patel-Schnider The description logic handbook 2003 Cambridge University Press Cambridge 43 95
8. F.W. Hartel, and S. de Coronado Information Standards within NCI J.S. Silva M.J. Ball C.G. Chute J.V. Douglas C. Langlotz J. Niland W. Scherlis Cancer informatics: essential technologies for clinical trials 2002 Springer New York 135 156
9. Minsky M. A framework for representing knowledge, MIT-AI Laboratory Memo 306, June, 1974. Reprinted from P. Winston (ed.), The psychology of computer vision. NY, McGraw-Hill, 1975
10. D.G. Bobrow, and T. Winograd An overview of KRL, a knowledge representation language Cogn Sci 1 1 1977 3 46
11. F. Baader, and H. Hollunder KRIS: knowledge representation and inference system SIGART Bull 3 2 1991 8 14
12. R.J. Brachman, D.L. McGuinness, P. Patel-Schneider, L. Alperin Resnick, and A. Borgida Living with CLASSIC: when and how to use a KL-ONE-like language Sowa Principles of semantic networks 1991 Morgan Kaufmann Los Altos, CA
13. R. MacGregor Inside the LOOM description classifier SIGART Bull 3 2 1991 88 92
14. E. Mays, R. Weida, R. Dionne, M. Laker, B. White, and C. Liang Scalable and expressive medical terminologies Proceedings/AMIA Annu Fall Symp 1996 259 263
15. McGuinness DL. Ontologies come of age. In: Fensel D, Hendler J, Lieberman H, Wahlster W, editors. The semantic web: why, what, and how. Cambridge: MIT Press; 2001. Available from: http://www.ksl.stanford.edu/people/dlm/papers/ ontologies-come-of-age-abstract.html
16. Rector A, Rogers J, Roberts A, Wroe C. Scale and context issues in ontologies to link health and bio-informatics, Proceedings/AMIA Fall Symp, 2002; p. 624. Available from: http://www.cs.man.ac.uk/mig/rector@cs.man.ac.uk
17. E. Mays, R. Dionne, and R. Weida K-Rep system overview SIGART Bull 3 2 1991 93 97
18. F. Baader Appendix: description logic terminology F. Baader D. Calvanese D. McGuinness D. Nardi P. Patel-Schnider The description logic handbook 2003 Cambridge Press Cambridge 485 495
19. Rector A. Modularisation of domain ontologies implemented in description logics and related formalisms including OWL. K-CAP '03, October 23-25, 2003 Sanibel Island, FL, p. 121-8
20. Baader F, Küsters R. Computing the least common subsumer and the most specific concept in the presence of cyclic ALN-concept descriptions. LTCS-Report 98-06, LuFg Theoretical Computer Science, RWTH Aachen, Germany; 1998
21. Personal communications with Drs. Fedack, Rose, Campbell and Spackman at SNOMED modelers meetings
22. McGuiness D, van Harmelen F, editors. Available from: http://www.w3.org/TR/owl-features/
23. R. Goldblatt Set concepts and validity in Topoi: the categorial analysis of logic 1984 Elsevier Amsterdam p. 212
24. D. Scott Advice on modal logic K. Lambert Philosophical problems in logic 1970 Reidel Dordrecht 143 173
25. Spackman K, Dionne R, Mays E, Weis J. Role Grouping as an extension to the description logic of ontylog, mobivated by concept modeling in SNOMED, Proceedings/AMIA Fall Symp; 2002
26. Sanner S. Towards practical taxonomic classification for description logics on the semantic web. Technical Report, Stanford University Knowledge Systems Lab KSL-03-06; 2003
27. F. Baader, and W. Nutt Basic description logics F. Baader D. Calvanese D. McGuinness D. Nardi Patel P-Schnider The description logic handbook 2003 Cambridge University Press Cambridge 43 95