Microevolutionary processes in the stygobitic genus Typhlocirolana (Isopoda Flabellifera Cirolanidae) as inferred by partial 12S and 16S rDNA sequences

Journal of Zoological Systematics and Evolutionary Research

Volumn 42, Issue 1, 2004, Pages 27-32

  Baratti, M ^a   Yacoubi Khebiza, M ^b   Messana, G ^c  

^a UNIVERSITY OF FLORENCE   (Italy)

^b University of Marrakech   (Morocco)

^c CNR   (Italy)

Author keywords

Cirolanid isopods; Mitochondrial genes (12S and 16S); Subterranean aquatic fauna; Western Mediterranean basin

Indexed keywords

CAVERNICOLOUS SPECIES; CRUSTACEAN; EVOLUTION; GENETIC ANALYSIS; PHYLOGENY;

AFRICA; MOROCCO; NORTH AFRICA;

CIROLANIDAE; CRUSTACEA; FLABELLIFERA; INVERTEBRATA; ISOPODA; TYPHLOCIROLANA;

EID: 1542648417     PISSN: 09475745     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1439-0469.2004.00232.x     Document Type: Article

References (47)

1. Alvinerie, J.; Antunes, M. T.; Cahuzac, B.; Lauriat-rage, A.; Montenat, C.; Pujol, C., 1992: Synthetic data on the paleogeographic history of Northeastern Atlantic and Betic-Rifian basin, during Neogene (from Brittany, France, to Morocco). Palaeogeogr., Palaeoclimatol., Palaeoecol., 95, 263-286.
2. Baratti, M.; Burchi, A.; Messana, G., Yacoubi-Khebiza, M., 1999: Inferring phylogenetic history of five taxa of the genus Typhlocirolana (Isopoda, Cirolanidae) by 12S sequence. Preliminary data. Mém. Biospéol., 26, 59-64.
3. Biju-duval, B.; Dercourt, J.; Le Pichon, X., 1976: La genèse de la Méditerranée. La Recherche 71, 811-822.
4. Boulanouar, M.; Yacoubi-khebiza, M.; Boutin, C.; Coineau, N., 1997: Un nouvel Isopode Microparasellide (Crustacea Janiroidea) des eaux souterraines de la region péri-rifaine (Maroc). Bull. Soc. Hist. Nat. 133, 21-27.
5. Boutin, C.; Coineau, N., 2000: Evolutionary rates and phylogenetic age in some stygobiontic species. In: Wilkens, H.; Culver, D. C.; Humphreys, W. F. (eds), Subterranean Ecosystems, Chapter 23, Ecosystems of the World 30. Amsterdam: Elsevier, pp. 433-451.
6. Boutin, C.; Boulanouar, M.; Coineau, N.; Messouli, M., 2002: Biodiversity in the stygobiontic cirolanids (Crustacea: Isopoda) from the Mediterranean Basin. I. A new species of Typhlocirolana in Morocco, taxonomic, ecological and biogeographic data. J. Nat. Hist. 36, 797-817.
7. Bromham, L.; Penny, D.; Rambaut, A.; Hendy, M. D., 2000: The power of relative rates tests depends on the data. J. Mol. Evol. 50, 296-301.
8. Caccone, A.; Allegrucci, G.; Cesaroni, D.; Cobolli Sbordoni, M.; De Matthaeis, E.; La Rosa, G.; Sbordoni, V., 1986: Genetic variability and divergence between cave dwelling populations of Typhlocirolana from Majorca and Sicily. Biochem. Syst. Ecol. 14, 215-221.
9. Coineau, N., 1994: Evolutionary biogeography of the microparasellid isopod Microcharon (Crustacea) in the Mediterranean Basin. Hydrobiologia 287, 77-93.
10. Coineau, N.; Boutin C., 1996: Age and origin of the stygobiontic amphipod Pseudoniphargus (Crustacea) in Morocco with the description of three new species. Boll. Mus. Civ. St. Nat. Verona 20, 503-520.
11. Coineau, N.; Boutin, C.; Faker El Abiari, A., 2001: Origin, age, and evolutionary rate of the microparasellid isopod Microcharon from the ground water of the south-Riffian region (Morocco). In: Kensley, B.; Brusca, R. C. (eds), Isopod Systematics and Evolution. Crustacean Issues, vol. 13, A. A. Balkena, Rotterdam, NL. pp. 301-312.
12. Culver, D. C.; Kane, T. C.; Fong, D. W., 1995: Adaptation and Natural Selection in Caves. The Evolution of Gammarus minus. Cambridge, MA: Harvard University Press, pp. 223.
13. Cunningham, C. W.; Blackstone, N. W.; Buss, L. W., 1992: Evolution of king crabs from hermit crab ancestors. Nature (London) 355, 539-542.
14. Englisch, U.; Koenemann, S., 2001: Preliminary phylogenetic analysis of selected subterranean amphipod crustaceans, using small subunit rDNA gene sequences. Org. Divers. Evol. 1, 139-145.
15. Fakher El Abiari, A.; Oulbaz, Z.; Messouli, M.; Coineau, N., 1999: A new species of Pseudoniphargus (Crustacea, Amphipoda) from subterranean water of northeastern Morocco: historical biogeography and evolutionary aspects. Contrib. Zool. 68, 161-171.
16. Felsenstein, J., 1981: Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376.
17. France, S. C.; Kocher, T. D., 1996: Geographic and bathymetric patterns of mitochondrial 16S rRNA sequence divergence among deep sea amphipods, Eurythenes gryllus. Mar. Biol. 126, 633-643.
18. Hedges, S. B.; Kumar, S., 2003: Genomic clocks and evolutionary timescales. Trends Genet. Trends In Genetics, 19, 200-206.
19. Holsinger, J. R., 2000: Ecological derivation, colonization and speciation. In: Wilkens, H.; Culver, D. C.; Humphreys, W. F. (eds), Subterranean Ecosystems, Chapter 21, Ecosystems of the World 30. Amsterdam: Elsevier, pp. 399-415.
20. Jeanmougin, F.; Thompson, J. D.; Gouy, M.; Higgins, D. G.; Gibson, T. J., 1998: Multiple sequence alignment with Clustal X. Trends Biochem. Sci. 23, 403-405.
21. Kimura, M., 1980: A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120.
22. Kitaura, J.; Wada, K.; Nishida, M., 1998: Molecular phylogeny and evolution of unique mud-using territorial behavior in ocypodid crabs (Crustacea: Brachyura: Ocypodidae). Mol. Biol. Evol. 15, 626-637.
23. Kluge, A. G.; Farris, J. S., 1969: Quantitative phyletics and the evolution of anurans. Syst. Zool. 18, 1-32.
24. Kumar, S.; Gadagkar, R. S., 2001: Disparity index: a simple statistic to measure and test the homogeneity of substitution patterns between molecular sequences. Genetics 158, 1321-1327.
25. Kumar, S.; Tamura, K.; Jakobsen, I. B.; Nei, M., 2001: MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
26. Muraji, M.; Nakahara, S., 2001: Phylogenetic relationships among fruit flies, Bactrocera (Diptera, Tephritidae) based on the mitochondrial rDNA sequences. Insect Mol. Biol. 10, 549-559.
27. Posada, D.; Crandall, K. A., 1998: Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817-818.
28. Rivera, M. A. J.; Howarth, F. G.; Taiti, S.; Roderick, G. K., 2002: Evolution in Hawaiian cave-adapted isopods (Oniscidea: Philosciidae): vicariant speciation or adaptive shifts? Mol. Phylogenet. Evol. 25, 1-9.
29. Rodriguez, F.; Oliver, J. F.; Marin, A.; Medina, J. R., 1990: The general stochastic model of nucleotide substitution. J. Theor. Biol. 142, 485-501.
30. Rögl, F., 1998. Palaeogeographic considerations for Mediterranean and Paratethys seaways (Oligocene to Miocene). Ann. Naturhist. Mus. Wien A 99, 279-310.
31. Rögl, F.; Steininger, F. F., 1983: Vom Zerfall der Tethys zu Mediterran und Paratethys. Ann. Naturhist. Mus. Wien A 85, 135-163.
32. Saitou, N.; Nei, M., 1987: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
33. Salzat, A.; Bouchon, D., 2000: Phylogenetic analysis of mitochondrial LSU rRNA in oniscids. C.R. Acad. Sci. Paris, Sci. 323, 827-837.
34. Sbordoni, V.; Allegrucci, G.; Cesaroni, D., 2000. Population genetic structure, speciation and evolutionary rates in cave dwelling organisms. In: Wilkens, H.; Culver, D. C.; Humphreys, W. F. (eds), Subterranean Ecosystems, Ecosystems of the World 30. Chapter 24. Amsterdam: Elsevier, pp. 453-477.
35. Schmidt, H. A.; Strimmer, K.; Vingron, M.; von Haeseler, A., 2002: TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18, 502-504.
36. Schubart, C.; Diesel, R.; Hedges, B., 1998: Rapid evolution to terrestrial life in Jamaican crabs. Nature 393, 363-365.
37. Simon, C.; Frati, F.; Beckenbach, A.; Crespi, B.; Liu, H.; Flook, P., 1994: Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87, 651-701.
38. Steelmann, J. H.; Reeb, C. A., 2001: Molecular phylogeny of eastern Pacific porcelain crabs, genera Petrolisthes and Pachycheles, based on the mtDNA 16S rDNA sequence: phylogeographic and systematic implications. Mol. Phylogenet. Evol. 19, 236-245.
39. Stepien, C. A.; Morton, B.; Dabrowski, K. A.; Guarnera, R. A.; Radja, T. ; Radja, B., 2001: Genetic diversity and evolutionary relationships of the troglodytic 'living fossil' Congeria kusceri (Bivalvia: Dreissenidae). Mol. Ecol. 10, 1873-1879.
40. Strimmer, K.; von Haeseler, A., 1997: Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc. Natl Acad. Sci. USA 94, 6815-6819.
41. Swofford, D.L., 2001: PAUP - Phylogenetic Analysis using Parsimony. Ill. Nat. Hist. Survey, Champaign, IL.
42. Tajima, F., 1993: Simple methods for testing molecular clock hypothesis. Genetics 135, 599-607.
43. Takezaki, N.; Rzhetsky, A.; Nei, M., 1995: Phylogenetic test of the molecular clock and linearized trees. Mol. Biol. Evol. 12, 823-833.
44. Tamura, K.; Nei, M., 1993: Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10, 512-526.
45. Taylor, D. J.; Hebert, P. D.; Coulbourne, J. K., 1996: Phylogenetics and evolution of the Daphnia longispina group (Crustacea) based on 12S rDNA sequence and allozyme variation. Mol. Phylogenet. Evol. 5, 495-510.
46. Wetzer, R., 2001: Hierarchical analysis of mtDNA variation and the use of mtDNA for isopod systematics. Contrib. Zool. 70, 23-39.
47. Yang, Z., 1993: Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol. Biol. Evol. 10, 1396-1401.