The use of suppression subtractive hybridization to identify strain-specific sequences in bacterial genomes

Genetika

Volumn 39, Issue 10, 2003, Pages 1317-1321

  Rebrikov, D V ^a   Kogan, Ya N ^b  

^a Evrogen JSC   (Russian Federation)

^b Integrated Genomics   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; GENE SEQUENCE; GENETIC ANALYSIS; NONHUMAN; STAPHYLOCOCCUS AUREUS; SUPPRESSION SUBTRACTIVE HYBRIDIZATION; VIRULENCE; GENETICS; IMAGE SUBTRACTION; NUCLEIC ACID HYBRIDIZATION;

BACTERIA (MICROORGANISMS); STAPHYLOCOCCUS AUREUS;

GENOME, BACTERIAL; NUCLEIC ACID HYBRIDIZATION; STAPHYLOCOCCUS AUREUS; SUBTRACTION TECHNIQUE;

EID: 1542467451     PISSN: 00166758     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (16)

1. Akopyants N.S., Fradkov A., Diatchenko L. et al. PCR-based subtractive hybridization and differences in gene content among strains of Helicobacter pylori // Proc. Natl Acad. Sci. USA. 1998. V. 95. P. 13108-13113.
2. Kuroda M., Ohta T., Uchiyama I. et al. Whole genome sequencing of meticillin-resistant Staphylococcus aureus // Lancet. 2000. V. 357. P. 1225-1240.
3. Stroeher U.H., Manning P.A. Vibrio cholerae serotype 0139: swapping genes for surface polysaccharide biosynthesis // Trends Microbiol. 1997. V. 5. P. 178-180.
4. Groisman E.A., Ochman H. How Salmonella became a pathogen // Trends Microbiol. 1997. V. 6. P. 343-349. Review.
5. Hacker J., Blum-Oehler G., Muhldorfer I., Tschape H. Pathogenicity islands of virulent bacteria: structure, function and impact on microbial evolution // Mol. Microbiol. 1997. V. 23. P. 1089-1097. Review.
6. Campbell A. Evolutionary significance of accessory DNA elements in bacteria // Annu Rev. Microbiol. 1981. V. 35. P. 55-83. Review.
7. Tinsley C.R., Nassif X. Analysis of the genetic differences between Neisseria meningitidis and Neisseria gonorrhoeae: two closely related bacteria expressing two different pathogenicities // Proc. Natl Acad. Sci. USA. 1996. V. 93. P. 11109-11114.
8. DeShazer D., Waag D.M., Frit D.L. Woods, D.E. Identification of a Burkholderia mallei polysaccharide gene cluster by subtractive hybridization and demonstration that the encoded capsule is an essential virulence determinant // Microb. Pathog. 2001. V. 30. P. 253-269.
9. Lin L.F., Posfai J., Roberts R.J., Kong H. Comparative genomics of the restriction-modification systems in Helicobacter pylori // Proc. Natl Acad. Sci. USA. 2001. V. 98. P. 2740-2745.
10. McGarvey J.A., Bermudez L.E. Phenotypic and genomic analyses of the Mycobacterium avium complex reveal differences in gastrointestinal invasion and genomic composition // Infect Immunol. 2001. V. 69. P. 7242-7249.
11. Smoot L.M., Franke D.D., McGillivary G., Actis L.A. Genomic analysis of the F3031 Brazilian purpuric fever clone of Haemophilus influenzae biogroup aegyptius by PCR-based subtractive hybridization // Infect Immunol. 2002. V. 70. P. 2694-26949.
12. Janke B., Dobrindt U., Hacker J., Blum-Oehler G. A subtractive hybridisation analysis of genomic differences between the uropathogenic E. coli strain 536 and the E. coli K-12 strain MG1655 // FEMS Microbiol. Lett. 2001. V. 199. P. 61-66.
13. Herd M., Kocks C. Gene fragments distinguishing an epidemic-associated strain from a virulent prototype strain of Listeria monocytogenes belong to a distinct functional subset of genes and partially cross-hybridize with other Listeria species // Infect Immunol. 2001. V. 69. P. 3972-3979.
14. Kersulyte D., Velapatino B., Dailide G. et al. Transposable element ISHp608 of Helicobacter pylori: nonrandom geographic distribution, functional organization, and insertion specificity // J. Bacteriol. 2002. V. 184. P. 992-1002.
15. Kloos W.E., Bannerman T.L. Staphylococcus and Micrococcus. Manual of clinical microbiology, 6th ed. Washington: Amer. Soc. Microbiol. 1995. P. 282-298.
16. Akopyants N. S., Clifton S. W., Kersulyte D. et al. Analyses of the cag pathogenicity island of Helicobacter pylori // Mol. Microbiol. 1998. V. 28. P. 37-53.