Exploitation of colinear relationships between the genomes of Lotus japonicus, Pisum sativum and Arabidopsis thaliana, for positional cloning of a legume symbiosis gene

Theoretical and Applied Genetics

Volumn 108, Issue 3, 2004, Pages 442-449

  Stracke, S ^a   Sato, S ^b   Sandal, N ^c   Koyama, M ^a,d   Kaneko, T ^b   Tabata, S ^b   Parniske, M ^a  

^a SAINSBURY LABORATORY   (United Kingdom)

^b KAZUSA DNA RESEARCH INSTITUTE   (Japan)

^c AARHUS UNIVERSITY   (Denmark)

^d JOHN INNES CENTRE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOMARKERS; CLONING; FUNGI; GENES; GRAIN (AGRICULTURAL PRODUCT); NITROGEN; PLANTS (BOTANY);

GENE ISOLATION; GENETIC MARKERS;

GENETIC ENGINEERING;

ARABIDOPSIS; ARTICLE; CHROMOSOME MAP; COMPARATIVE STUDY; DNA SEQUENCE; GENETIC DATABASE; GENETICS; LOTUS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PEA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SYMBIOSIS;

ARABIDOPSIS; BASE SEQUENCE; CHROMOSOME MAPPING; DATABASES, GENETIC; LOTUS; MOLECULAR SEQUENCE DATA; PEAS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; SEQUENCE ANALYSIS, DNA; SYMBIOSIS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; ARBUSCULAR MYCORRHIZAE; EMBRYOPHYTA; FUNGI; LOTUS CORNICULATUS VAR. JAPONICUS; PISUM SATIVUM; SATIVUM;

EID: 1542321067     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-003-1438-2     Document Type: Article

References (42)

1. Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208-218
2. Blanc G, Barakat A, Guyot R, Cooke R, Delseny I (2000) Extensive duplication and reshuffling in the Arabidopsis genome. Plant Cell 12:1093-1101
3. Blanc G, Hiokamp K, Wolfe KH (2003) A recent polyploid superimposed on older large-scale duplications in the Arabidopsis genome. Genome Res 13:137-144
4. Borisov AY, Madsen LH, Tsyganov VE, Umehara Y, Voroshilova VA, Batagov AO, Sandal N, Mortensen A, Schauser L, Ellis N, Tikhonovich IA, Stougaard J (2003) The Sym35 gene required for root nodule development in Pea is an ortholog of Mn from Lotus japonicus. Plant Physiol 131:1009-10017
5. Carroll BJ, McNeil DL, Gresshoff PM (1985). Isolation and properties of soybean glycine-max (L) Merr mutants that nodulate in the presence of high nitrate concentrations. Proc Natl Acad Sci USA 82:4162-4166
6. Cyranoski D (2001) Japanese legume project may help to fix the nitogen problem. Nature 409:272
7. Dehmer KJ (2001) Conclusions on the taxonomy of the Solanum nigrum complex by molecular analyses of IPK germplasm accessions. In: van den Berg RG, Barendse GWM, van der Weerden GM, Mariani C (eds) Solanaceae V: Advances in taxonomy and utilization. Proc Vth Int Solanaceae Conference, July 23-29th (2000), Nijmegen. Nijmegen University Press, pp 85-96
8. Duc G, Messager A (1989) A mutagenesis of pea (Pisum sativum L.) and the isolation of mutants for nodulation and nitrogen fixation. Plant Sci 60:207-213
9. -) obtained in pea (Pisum sativum L.) and faba bean (Vicia faba L.). Plant Sci 60:215-222
10. Endre G, Kereszt A, Kevei Z, Mihacea S, Kaló P, Kiss GB (2002) A receptor kinase gene regulating symbiotic nodule development. Nature 417:962-966
11. Flemetakis E, Kavroulakis NEM, Quaedvlieg HP, Spaink HP, Dimou M, Roussis A, Katinakis P (2000) L. japonicus contains two distinct ENOD40 genes that are expressed in symbiotic, nonsymbiotic, and embryonic tissues. Mol Plant-Microbe Interact 13:987-994
12. Gandolfo MA, Nixon KC, Crepet WL (1998) A new fossil flower from the Turonian of New Jersey: Dressiantha bicarpellata gen. et sp. nov. (Capparales). Am J Bot 85:964-974
13. Giovannoni JJ, Wing RA, Ganal MW, Tanksley SD (1991) Isolation of molecular markers from specific chromosomal intervals using DNA pools from existing mapping populations. Nucleic Acids Res 19:6553-6558
14. Grant D, Cregan P, Shoemaker RC (2000) Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis. Proc Natl Acad Sci USA 97:4168-4173
15. Gualtieri G, Kulikova O, Limpens E, Kim DJ, Cook DR, Bisseling T, Geurts R (2002) Microsynteny between pea and Medicago truncatula in the SYM2 region. Plant Mol Biol 50:225-235
16. Kawaguchi M, Motomura T, Imaizumi-Anraku H, Akao S, Kawasaki S (2001) Providing the basis for genomics in L. japonicus: the accessions Miyakojima and Gifu are appropriate crossing partners for genetic analyses. Mol Genet Genomics 266:157-166
17. Krusell L, Madsen LH, Sato S, Aubert G, Genua A, Szczyglowski K, Duc G, Kaneko T, Tabata S, de Bruijn F, Pajuelo E, Sandal N, Stougaard J (2002) Shoot control of root development and nodulation is mediated by a receptor-like kinase. Nature 420:422-426
18. Laucou V, Haurogne K, Ellis N, Rameau C (1998) Genetic mapping in pea. 1. RAPD-based genetic linkage map of Pisum sativum. Theor Appl Genet 97:905-915
19. Michaelson MJ, Price HJ, Ellison JR, Johnston JS (1991) Comparison of plant DNA contents determined by Feulgen microspectrophotometry and laser flow-cytometry. Am J Bot 78:183-188
20. Michelmore RW, Paran I, Kesseli RV (1991) Identification of markers linked to disease-resistance genes by bulked segregant analysis - a rapid method to detect markers in specific genomic regions by using segregating populations. Proc Nat Acad Sci USA 88:9828-9832
21. Nishimura R, Hayashi M, Wu GJ, Kouchi H, Imaizumi-Anraku H, Murakami Y, Kawasaki S, Akao S, Ohmori M, Nagasawa M, Harada K, Kawaguchi M (2002) HAR1 mediates systemic regulation of symbiotic organ development. Nature 420:426-429
22. Pedrosa A, Sandal N, Stougaard J, Schweizer D, Bachmair A (2002) Chromosomal map of the model legume Lotus japonicus. Genetics 161:1661-72
23. Sandal N, Krusell L, Radutoiu S, Olbryt M, Pedrosa A, Stracke S, Parniske M, Bachmair A, Ketelsen T, Stougaard J (2003) An AFLP-based genetic linkage map of the model legume L. japonicus developed from an interspecific F2 mapping population. Genetics (in press)
24. Sato S, Kotani H, Nakamura Y, Kaneko T, Asamizu E, Fukami M, Miyajima N, Tabata S (1997) Structural analysis of Arabidopsis thaliana chromosome 5. I. Sequence features of the 1.6-Mb regions covered by 20 physically assigned P1 clones. DNA Res 4:215-230
25. Sato S, Kaneko T, Nakamura Y, Asamizu E, Kato T, Tabata S (2001) Structural analysis of a L. japonicus genome. I. Sequence features and mapping of 56 TAC clones which cover the 5.4 Mb regions of the genome. DNA Res 8:311-318
26. Schauser L, Handberg N, Sandal N, Stiller J, Thykjaer T, Pajuelo E, Nielsen A, Stougaard J (1998) Symbiotic mutants deficient in nodule establishment identified after T-DNA transformation of L. japonicus. Mol Gen Genet 259:414-423
27. Schneider A, Walker SA, Poyser S, Sagan M, Ellis THN, Downie JA (1999) Genetic mapping and functional analysis of a nodulation-defective mutant (sym19) of pea (Pisum sativum L.). Mol Gen Genet 262:1-11
28. Searle IR, Men AE, Laniya TS, Buzas DM, Iturbe-Ormaetxe I, Carroll BJ, Gresshoff PM (2003) Long-distance signaling in nodulation directed by a CLAVATA1-like receptor kinase. Science 299:109-112
29. Shoemaker RC, Polzin K, Labate J, Specht J, Brummer EC, Olson T, Young N, Concibido V, Wilcox J, Tamulonis JP, Kochert G, Boerma HR (1996) Genome duplication in soybean (Glycine subgenus soja). Genet 144:329-338
30. Siebert PD, Chenchik A, Kellogg DE, Lukyanov KA, Lukyanov SA (1995) An improved PCR method for walking in uncloned genomic DNA. Nucleic Acids Res 23:1087-1088.
31. Staden R (1996) The Staden sequence analysis package. Mol Biotechnol 5:233-241
32. Steiner JJ, Poklemba CJ, Fjellstrom RG, Elliott LF (1995) A rapid one-tube genomic DNA extraction process for PCR and RAPD analyses. Nucleic Acids Res 23:2569-2570
33. Stracke S, Kistner C, Yoshida S, Mulder L, Sato S, Kaneko T, Tabata S, Sandal N, Stougaard J, Szcyglowski K, Parniske M (2002) A plant receptor-like kinase required for both bacterial and fungal symbiosis. Nature 417:959-962
34. Sullivan JT, Ronson CW (1998) Evolution of rhizobia by acquisition of a 500-kb symbiosis island that integrates into a phe-tRNA gene. Proc Natl Acad Sci USA 95:9059-9059
35. The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
36. Thoquet P, Gherardi M, Journet EP, Kereszt A, Ane JM, Prosperi JM, Huguet T (2002) The molecular genetic linkage map of the model legume Medicago truncatula: an essential tool for comparative legume genomics and the isolation of agronomically important genes. BMC Plant Biol 2:1
37. Turner SR, Hellens R, Ireland R, Ellis N, Rawsthorne S (1993) The organization and expression of the genes encoding the mitochondrial glycine decarboxylase complex and serine hydroxy-methyltransferase in Pea (Pisum sativum). Mol Gen Genetics 236:402-408
38. Vision TJ, Brown DG, Tanksley SD (2000) The origins of genomic duplications in Arabidopsis. Science 290:2114-2117
39. Vos P, Hogers R, Bleeker M, Reijans M, Vandelee T et al. (1995) AFLP - a new technique for DNA-fingerprinting. Nucleic Acids Res 23:4407-4414
40. Wegel E, Schauser L, Sandal N, Stougaard J, Parniske M (1998) Mycorrhiza mutants of L. japonicus define genetically independent steps during symbiotic infection. Mol Plant-Microbe Interact 11:933-936
41. Wolfe KH, Li W-H (2003) Molecular evolution meets the genomics revolution. Nature Genet 33:255-265
42. Ziolkowski PA, Blanc G, Sadowski J (2003) Structural divergence of chromosomal segments that arose from successive duplication events in the Arabidopsis genome. Nucleic Acids Res 31:1339-1350