Effects of oxygen and light intensity on transcriptome expression in Rhodobacter sphaeroides 2.4.1: Redox active gene expression profile

Journal of Biological Chemistry

Volumn 279, Issue 10, 2004, Pages 9146-9155

  Roh, Jung Hyeob ^a   Smith, William E ^a   Kaplan, Samuel ^a,b  

^a UNIVERSITY OF TEXAS   (United States)

^b UNIVERSITY OF TEXAS MEDICAL SCHOOL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC ENGINEERING; GROWTH KINETICS; PHOTOSYNTHESIS; REDOX REACTIONS;

GENE EXPRESSION;

BIOCHEMISTRY;

ARTICLE; BACTERIAL GROWTH; ELECTRON TRANSPORT; GENE CLUSTER; GENE EXPRESSION REGULATION; GENE SEQUENCE; GENETIC ANALYSIS; NONHUMAN; OXIDATION REDUCTION REACTION; OXYGEN TRANSPORT; PHOTOSYNTHESIS; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN EXPRESSION; REGULON; RHODOBACTER SPHAEROIDES;

GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, BACTERIAL; LIGHT; MULTIGENE FAMILY; OXIDATION-REDUCTION; OXYGEN; RHODOBACTER SPHAEROIDES; TRANSCRIPTION, GENETIC;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; RHODOBACTER; RHODOBACTER SPHAEROIDES; RHODOBACTER SPHAEROIDES 2.4.1; RHODOPSEUDOMONAS;

EID: 1542275267     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M311608200     Document Type: Article

References (87)

1. Kiley, P. J., and Kaplan, S. (1988) Microbiol. Rev. 52, 50-69
2. Zeilstra-Ryalls, J., Gomelsky, M., Eraso, J. M., Yeliseev, A., O'Gara, J., and Kaplan, S. (1998) J. Bacteriol. 180, 2801-2809
3. Oh, J. I., and Kaplan, S. (2001) Mol. Microbiol. 39, 1116-1123
4. Bowyer, J. R., Hunter, C. N., Ohnishi, T., and Niederman, R. A. (1985) J. Biol. Chem. 260, 3295-3304
5. Hunter, C. N., Pennoyer, J. D., and Niederman, R. A. (1982) Prog. Clin. Biol. Res. 102, 257-265
6. Oh, J. I., Ko, I. J., and Kaplan, S. (2001) J. Bacteriol. 183, 6807-6814
7. Oh, J. I., and Kaplan, S. (1999) Biochemistry 38, 2688-2696
8. Eraso, J. M., and Kaplan, S. (1995) J. Bacteriol. 177, 2695-2706
9. Eraso, J. M., and Kaplan, S. (1996) J. Bacteriol. 178, 7037-7046
10. Lee, J. K., and Kaplan, S. (1992) J. Bacteriol. 174, 1158-1171
11. Gomelsky, M., Horne, I. M., Lee, H. J., Pemberton, J. M., McEwan, A. G., and Kaplan, S. (2000) J. Bacteriol. 182, 2253-2261
12. Gomelsky, M., and Kaplan, S. (1998) J. Biol. Chem. 273, 35319-35325
13. Braatsch, S., Gomelsky, M., Kuphal, S., and Klug, G. (2002) Mol. Microbiol. 45, 827-836
14. Penfold, R. J., and Pemberton, J. M. (1994) J. Bacteriol. 176, 2869-2876
15. Zeilstra-Ryalls, J. H., and Kaplan, S. (1998) J. Bacteriol. 180, 1496-1503
16. Zeilstra-Ryalls, J. H., and Kaplan, S. (1995) J. Bacteriol. 177, 6422-6431
17. Yeliseev, A. A., Eraso, J. M., and Kaplan, S. (1996) J. Bacteriol. 178, 5877-5883
18. Oh, J. I., and Kaplan, S. (2000) EMBO J. 19, 4237-4247
19. Oh, J. I., Eraso, J. M., and Kaplan, S. (2000) J. Bacteriol. 182, 3081-3087
20. Masuda, S., and Bauer, C. E. (2002) Cell 110, 613-623
21. Mackenzie, C., Choudhary, M., Larimer, F. W., Predki, P. F., Stilwagen, S., Armitage, J. P., Barber, R. D., Donohue, T. J., Hosler, J. P., Newman, J. E., Shapleigh, J. P., Sockett, R. E., Zeilstra-Ryalls, J., and Kaplan, S. (2001) Photo. Res. 70, 19-41
22. Romagnoli, S., Packer, H. L., and Armitage, J. P. (2002) J. Bacteriol. 184, 5590-5598
23. Gibson, J. L., Dubbs, J. M., and Tabita, F. R. (2002) J. Bacteriol. 184, 6654-6664
24. Joshi, H. M., and Tabita, F. R. (1996) Proc. Natl. Acad. Sci. U. S. A. 93, 14515-14520
25. Eraso, J. M., and Kaplan, S. (2000) Biochemistry 39, 2052-2062
26. Roh, J. H., and Kaplan, S. (2002) J. Bacteriol. 184, 5330-5338
27. Li, C., and Hung Wong, W. (2001) Genome Biol. 2, 1-11
28. Li, C., and Wong, W. H. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 31-36
29. Tai, S. P., and Kaplan, S. (1985) J. Bacteriol. 164, 181-186
30. Chory, J., and Kaplan, S. (1983) J. Bacteriol. 153, 465-474
31. Kaplan, S., and Arntzen, C. J. (1982) Photosynthetic Energy Conversion by Plants and Bacteria, pp. 67-151, Academic Press, Orlando
32. Lee, J. K., DeHoff, B. S., Donohue, T. J., Gumport, R. I., and Kaplan, S. (1989) J. Biol. Chem. 264, 19354-19365
33. Lee, J. K., Kiley, P. J., and Kaplan, S. (1989) J. Bacteriol. 171, 3391-3405
34. Addlesee, H. A., Fiedor, L., and Hunter, C. N. (2000) J. Bacteriol. 182, 3175-3182
35. Lang, H. P., Cogdell, R. J., Gardiner, A. T., and Hunter, C. N. (1994) J. Bacteriol. 176, 3859-3869
36. McGlynn, P., and Hunter, C. N. (1993) Mol. Gen. Genet. 236, 227-234
37. Hunter, C. N., Ashby, M. K., and Coomber, S. A. (1987) Biochem. J. 247, 489-492
38. Gibson, J. L., Falcone, D. L., and Tabita, F. R. (1991) J. Biol. Chem. 266, 14646-14653
39. Jouanneau, Y., and Tabita, F. R. (1986) J. Bacteriol. 165, 620-624
40. Yakunin, A. F., Fedorov, A. S., Laurinavichene, T. V., Glaser, V. M., Egorov, N. S., Tsygankov, A. A., Zinchenko, V. V., and Hallenbeck, P. C. (2001) Can. J. Microbiol. 47, 206-212
41. Donohue, T. J., McEwan, A. G., and Kaplan, S. (1986) J. Bacteriol. 168, 962-972
42. Jenney, F. E., Jr., and Daldal, F. (1993) EMBO J. 12, 1283-1292
43. Yun, C. H., Beci, R., Crofts, A. R., Kaplan, S., and Gennis, R. B. (1990) Eur. J. Biochem. 194, 399-411
44. Toledo-Cuevas, M., Barquera, B., Gennis, R. B., Wikstrom, M., and Garcia-Horsman, J. A. (1998) Biochim. Biophys. Acta 1365, 421-434
45. Shapleigh, J. P., and Gennis, R. B. (1992) Mol. Microbiol. 6, 635-642
46. Cao, J., Hosler, J., Shapleigh, J., Revzin, A., and Ferguson-Miller, S. (1992) J. Biol. Chem. 267, 24273-24278
47. Ward, M. J., Bell, A. W., Hamblin, P. A., Packer, H. L., and Armitage, J. P. (1995) Mol. Microbiol. 17, 357-366
48. Porter, S. L., Warren, A. V., Martin, A. C., and Armitage, J. P. (2002) Mol. Microbiol. 46, 1081-1094
49. Eraso, J. M., and Kaplan, S. (1994) J. Bacteriol. 176, 32-43
50. Gomelsky, M., and Kaplan, S. (1995) J. Bacteriol. 177, 4609-4618
51. Zhu, Y. S., Cook, D. N., Leach, F., Armstrong, G. A., Alberti, M., and Hearst, J. E. (1986) J. Bacteriol. 168, 1180-1188
52. Zhu, Y. S., and Hearst, J. E. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 7613-7617
53. Zeng, X., Choudhary, M., and Kaplan, S. (2003) J. Bacteriol. 185, 6171-6184
54. O'Gara, J. P., and Kaplan, S. (1997) J. Bacteriol. 179, 1951-1961
55. Yeliseev, A. A., and Kaplan, S. (2000) J. Biol. Chem. 275, 5657-5667
56. Yeliseev, A. A., and Kaplan, S. (1995) J. Biol. Chem. 270, 21167-21175
57. Coomber, S. A., Jones, R. M., Jordan, P. M., and Hunter, C. N. (1992) Mol. Microbiol. 6, 3159-3169
58. Gibson, L. C., McGlynn, P., Chaudhri, M., and Hunter, C. N. (1992) Mol. Microbiol. 6, 3171-3186
59. Neidle, E. L., and Kaplan, S. (1993) J. Bacteriol. 175, 2292-2303
60. Donohue, T. J., Hoger, J. H., and Kaplan, S. (1986) J. Bacteriol. 168, 953-961
61. Brandner, J. P., McEwan, A. G., Kaplan, S., and Donohue, T. J. (1989) J. Bacteriol. 171, 360-368
62. MacGregor, B. J., and Donohue, T. J. (1991) J. Bacteriol. 173, 3949-3957
63. Schilke, B. A., and Donohue, T. J. (1992) J. Mol. Biol. 226, 101-115
64. Oh, J. I., Ko, I. J., and Kaplan, S. (2003) Microbiology 149, 949-960
65. Gomelsky, M., and Kaplan, S. (1995) J. Bacteriol. 177, 1634-1637
66. Sabaty, M., and Kaplan, S. (1996) J. Bacteriol. 178, 35-45
67. Lee, J. K., Wang, S., Eraso, J. M., Gardner, J., and Kaplan, S. (1993) J. Biol. Chem. 268, 24491-24497
68. Gomelsky, L., Sram, J., Moskvin, O. V., Horne, I. M., Dodd, H. N., Pemberton, J. M., McEwan, A. G., Kaplan, S., and Gomelsky, M. (2003) Microbiology 144, 377-388
69. Horne, I. M., Pemberton, J. M., and McEwan, A. G. (1998) Microbiology 144, 2255-2261
70. Gomelsky, M., and Kaplan, S. (1995) Microbiology 141, 1805-1819
71. Yeliseev, A. A., and Kaplan, S. (1999) J. Biol. Chem. 274, 21234-21243
72. Buggy, J. J., Sganga, M. W., and Bauer, C. E. (1994) J. Bacteriol. 176, 6936-6943
73. Shimada, H., Wada, T., Handa, H., Ohta, H., Mizoguchi, H., Nishimura, K., Masuda, T., Shioi, Y., and Takamiya, K. (1996) Plant Cell Physiol. 37, 515-522
74. Zeng, X., and Kaplan, S. (2001) J. Bacteriol. 183, 6355-6364
75. Lin, E. C. C., and Lynch, A. S. (1996) Regulation of Gene Expression in Escherichia coli, R. G. Landes, Austin, TX
76. Mouncey, N. J., and Kaplan, S. (1998) J. Bacteriol. 180, 2228-2231
77. Daldal, F., Mandaci, S., Winterstein, C., Myllykallio, H., Duyck, K., and Zannoni, D. (2001) J. Bacteriol. 183, 2013-2024
78. Donohue, T. J., McEwan, A. G., Van Doren, S., Crofts, A. R., and Kaplan, S. (1988) Biochemistry 27, 1918-1925
79. Myllykallio, H., Zannoni, D., and Daldal, F. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 4348-4353
80. Shapleigh, J. P., Hill, J. J., Alben, J. O., and Gennis, R. B. (1992) J. Bacteriol. 174, 2338-2343
81. Mouncey, N. J., Gak, E., Choudhary, M., Oh, J., and Kaplan, S. (2000) FEMS Microbiol. Lett. 192, 205-210
82. Hallenbeck, P. L., Lerchen, R., Hessler, P., and Kaplan, S. (1990) J. Bacteriol. 172, 1749-1761
83. Wartmann, T., Gellissen, G., and Kunze, G. (2001) Curr. Genet. 40, 172-178
84. Gualerzi, C. O., Giuliodori, A. M., and Pon, C. L. (2003) J. Mol. Biol. 331, 527-539
85. Weber, M. H., and Marahiel, M. A. (2003) Sci. Prog. 86, 9-75
86. Ermolenko, D. N., and Makhatadze, G. I. (2002) Cell Mol. Life Sci. 59, 1902-1913
87. Choudhary, M., and Kaplan, S. (2000) Nucleic Acids Res. 28, 862-867