메뉴 건너뛰기




Volumn 227, Issue 3, 2004, Pages 429-436

Study of DNA binding sites using the Rényi parametric entropy measure

Author keywords

DNA binding sites; Information theory; R nyi entropy; Shannon entropy; Uncertainty measures

Indexed keywords

DNA;

EID: 1542268964     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jtbi.2003.11.026     Document Type: Article
Times cited : (19)

References (30)
  • 3
    • 0033896437 scopus 로고    scopus 로고
    • Information entropy and power law distribution for chaotic systems
    • Bashkirov A.G., Vityazev A.V. Information entropy and power law distribution for chaotic systems. Physica A. 277:2000;136-145.
    • (2000) Physica a , vol.277 , pp. 136-145
    • Bashkirov, A.G.1    Vityazev, A.V.2
  • 5
    • 0023147228 scopus 로고
    • Selection of DNA binding sites by regulatory proteins, statistical mechanical theory and application to operators and promoters
    • Berg O.G., von Hippel P.H. Selection of DNA binding sites by regulatory proteins, statistical mechanical theory and application to operators and promoters. J. Mol. Biol. 193:1987;723-775.
    • (1987) J. Mol. Biol. , vol.193 , pp. 723-775
    • Berg, O.G.1    Von Hippel, P.H.2
  • 6
    • 0032685911 scopus 로고    scopus 로고
    • A non extensive approach to the entropy of symbolic sequences
    • Buiatti M., Grigolini P., Palatella L. A non extensive approach to the entropy of symbolic sequences. Physica A. 268:1999;214-224.
    • (1999) Physica a , vol.268 , pp. 214-224
    • Buiatti, M.1    Grigolini, P.2    Palatella, L.3
  • 8
    • 0027286405 scopus 로고
    • Computer assisted prediction classification, and delimitation of protein binding sites in nucleic acids
    • Frech K., Hermann G., Werner T. Computer assisted prediction classification, and delimitation of protein binding sites in nucleic acids. Nucleic Acids Res. 21:1993;1655-1664.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 1655-1664
    • Frech, K.1    Hermann, G.2    Werner, T.3
  • 10
    • 0035498607 scopus 로고    scopus 로고
    • Multifractal analysis of DNA sequences using a novel chaos-game representation
    • Gutiérrez J.M., Rodríguez M.A., Abramson G. Multifractal analysis of DNA sequences using a novel chaos-game representation. Physica A. 300:2001;271-284.
    • (2001) Physica a , vol.300 , pp. 271-284
    • Gutiérrez, J.M.1    Rodríguez, M.A.2    Abramson, G.3
  • 11
    • 0025258909 scopus 로고
    • On the validity of Shannon-information calculations for molecular biological sequences
    • Hariri A., Weber B., Olmsted J. On the validity of Shannon-information calculations for molecular biological sequences. J. Theor. Biol. 147:1990;235-254.
    • (1990) J. Theor. Biol. , vol.147 , pp. 235-254
    • Hariri, A.1    Weber, B.2    Olmsted, J.3
  • 12
    • 0001818891 scopus 로고
    • Measuring correlations in symbol sequences
    • Herzel, H., GroBe, 1995. Measuring correlations in symbol sequences. Physica A 518-542.
    • (1995) Physica A , pp. 518-542
    • Herzel, H.1    GroBe2
  • 15
    • 0004279283 scopus 로고    scopus 로고
    • New York: Oxford University Press
    • Lewin B. Genes VI. 1997;Oxford University Press, New York.
    • (1997) Genes VI
    • Lewin, B.1
  • 16
    • 0033563504 scopus 로고    scopus 로고
    • Statistical properties of open reading frames in complete genome sequence
    • Li W. Statistical properties of open reading frames in complete genome sequence. Comput. Chem. 23:1999;283-301.
    • (1999) Comput. Chem. , vol.23 , pp. 283-301
    • Li, W.1
  • 18
    • 0032168533 scopus 로고    scopus 로고
    • A general procedure for locating and analysing protein-binding sequence motifs in nucleic acids
    • O'Neill M.C. A general procedure for locating and analysing protein-binding sequence motifs in nucleic acids. Proc. Natl Acad. Sci. USA. 95:1998;10710-10715.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 10710-10715
    • O'Neill, M.C.1
  • 20
    • 0029038960 scopus 로고
    • Predicting Pol II promoter sequences using transcription factor binding sites
    • Prestridge D.S. Predicting Pol II promoter sequences using transcription factor binding sites. J. Mol. Biol. 249:1995;923-932.
    • (1995) J. Mol. Biol. , vol.249 , pp. 923-932
    • Prestridge, D.S.1
  • 21
    • 0028971143 scopus 로고
    • Matind and matinspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
    • Quandt K.et al. Matind and matinspector. new fast and versatile tools for detection of consensus matches in nucleotide sequence data Nucleic Acids Res. 23:1995;4878-4884.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4878-4884
    • Quandt, K.1
  • 23
    • 0001243002 scopus 로고
    • Information and entropy of patterns in genetic switches
    • Erickson, G.J., Smith, C.R. (Eds.), Kluwer Academic Publishers, Dordrecht, The Netherlands
    • Schneider, T.D., 1988. Information and entropy of patterns in genetic switches. In: Erickson, G.J., Smith, C.R. (Eds.), Maximum-entropy and Bayesian Methods in Science and Engineering, Vol. 2. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 147-154.
    • (1988) Maximum-entropy and Bayesian Methods in Science and Engineering , vol.2 , pp. 147-154
    • Schneider, T.D.1
  • 24
    • 0031583033 scopus 로고    scopus 로고
    • Information content of individual genetic sequences
    • Schneider T.D. Information content of individual genetic sequences. J. Theor. Biol. 189(4):1997;427-441.
    • (1997) J. Theor. Biol. , vol.189 , Issue.4 , pp. 427-441
    • Schneider, T.D.1
  • 25
  • 26
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • Shannon, C.E., 1948. A mathematical theory of communication. Bell System Tech. J. 27, 379-423, 623-659.
    • (1948) Bell System Tech. J. , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 27
    • 0000133199 scopus 로고
    • Identifying protein binding sites from unaligned DNA fragments
    • Stormo G.D., Hartzell G.W. Identifying protein binding sites from unaligned DNA fragments. Proc. Natl Acad. Sci. USA. 86:1989;1183-1187.
    • (1989) Proc. Natl Acad. Sci. USA , vol.86 , pp. 1183-1187
    • Stormo, G.D.1    Hartzell, G.W.2
  • 29
    • 0037083889 scopus 로고    scopus 로고
    • Multi-fractal properties of Hao's geometric representations of DNA sequences
    • Tino P. Multi-fractal properties of Hao's geometric representations of DNA sequences. Physica A. 304(3-4):2002;480-494.
    • (2002) Physica a , vol.304 , Issue.34 , pp. 480-494
    • Tino, P.1
  • 30
    • 0000204878 scopus 로고
    • Evolution of long range fractal correlations and 1/f noise in DNA base sequences
    • Voss R.F. Evolution of long range fractal correlations and 1/f noise in DNA base sequences. Phys. Rev. Lett. 68:1992;3805-3808.
    • (1992) Phys. Rev. Lett. , vol.68 , pp. 3805-3808
    • Voss, R.F.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.