The disordered conformation of κ-carrageenan in solution as determined by NMR experiments and molecular modeling

Carbohydrate Research

Volumn 340, Issue 5, 2005, Pages 943-958

  Bosco, Marco ^a,d   Segre, Annalaura ^b   Miertus, Stanislav ^a,e   Cesàro, Attilio ^c   Paoletti, Sergio ^c  

^a POLY bios   (Italy)

^b CNR   (Italy)

^c UNIVERSITY OF TRIESTE   (Italy)

^d Direzione Ricerca   (Italy)

^e UNIDO   (Italy)

Author keywords

Carrageenan; Conformation; Molecular modeling; NMR; NOESY; Structure

Indexed keywords

HYDROGEN BONDS; MATHEMATICAL MODELS; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE; PH EFFECTS; POLYMERS; SOLVENTS; STIFFNESS;

MOLECULAR MECHANICS; MOLECULAR MODELING; POLYMER CHAINS; POLYMER CONCENTRATION;

CONFORMATIONS;

CARRAGEENAN; POLYMER;

ARTICLE; ENERGY TRANSFER; HYDROGEN BOND; ION TRANSPORT; MOLECULAR DYNAMICS; MOLECULAR MODEL; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PH MEASUREMENT; POLYMERIZATION; PRIORITY JOURNAL; TEMPERATURE MEASUREMENT;

CARBOHYDRATE CONFORMATION; CARBON ISOTOPES; CARRAGEENAN; COMPUTER SIMULATION; DIMETHYL SULFOXIDE; ELECTRON SPIN RESONANCE SPECTROSCOPY; HYDROGEN; HYDROGEN-ION CONCENTRATION; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR;

EID: 15044365660     PISSN: 00086215     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.carres.2005.01.035     Document Type: Article

References (71)

1. G. Wagner, and K. Wütrich J. Mol. Biol. 155 1982 347 366
2. D.A. Brant Quart. Rev. Biophys. 9 1976 527 596
3. S.M.A. Holmbeck, P.A. Petillo, and L.E. Lerner Biochemistry 33 3 1994 14246 14255
4. A. Almond, A. Brass, and J.K. Sheehan Glycobiology 8 1998 973 980
5. C.A. Bush, M. Martin-Pastor, and A. Imberty Annu. Rev. Biophys. Biomol. Struct. 28 1999 269 293
6. D.S. Reid Ionic polysaccharides A.D. Wilson H.J. Prosser Developments in Ionic Polymers-1 1983 Applied Science London, UK
7. J. Borgstrom, P.O. Quist, and L. Piculell Macromolecules 29 1996 5926 5933
8. L.S. Chronakis, and M. Ramzi Biomacromolecules 3 2002 793 804
9. N.S. Anderson, J.W. Campbell, M.M. Harding, D.A. Rees, and J.W.B. Samuel J. Mol. Biol. 45 1969 85 99
10. O. Smidsrød, I.-L. Andresen, B. Larsen, and T. Painter Carbohydr. Res. 80 1980 C11 C16
11. H. Grasdalen, and O. Smidsrød Macromolecules 14 1981 1842 1845
12. C. Rochas, and M. Rinaudo Carbohydr. Res. 105 1982 227 236
13. I.T. Norton, D.M. Goodall, E.R. Morris, and D.A. Rees J. Chem. Soc., Faraday Trans. 1 79 1983 2475 2488
14. I.T. Norton, D.M. Goodall, E.R. Morris, and D.A. Rees J. Chem. Soc., Faraday Trans. 1 79 1983 2489 2500
15. O. Smidsrød, and H. Grasdalen Hydrobiologia 116/117 1984 178 186
16. S. Paoletti, O. Smidsrød, and H. Grasdalen Biopolymers 23 1984 1771 1794
17. S. Paoletti, F. Delben, A. Cesàro, and H. Grasdalen Macromolecules 18 1985 1834 1841
18. K.R.J. Austen, D.M. Goodall, and I.T. Norton Biopolymers 27 1988 139 155
19. R.P. Millane, R. Chandrasekaran, S. Arnott, and I.C.M. Dea Carbohydr. Res. 182 1988 1 17
20. D. Slootmaekers, C. De Jonghe, H. Reynaers, F.A. Varkevisser, and C.J. Bloys van Treslong Int. J. Biol. Macromol. 10 1988 160 168
21. P. Cairns, E.D.T. Atkins, M.J. Miles, and V.J. Morris Int. J. Biol. Macromol. 13 1991 65 68
22. C. Viebke, J. Borgström, and L. Piculell Carbohydr. Polym. 27 1995 145 154
23. K. Bongaerts, H. Reynaers, F. Zanetti, and S. Paoletti Macromolecules 32 1999 675 682
24. K. Bongaerts, H. Reynaers, F. Zanetti, and S. Paoletti Macromolecules 32 1999 683 689
25. F. Cuppo, H. Reynaers, and S. Paoletti Macromolecules 35 2002 539 547
26. S.A. Foord, and E.D.T. Atkins Biopolymers 28 1989 1345 1365
27. J.-M. Guenet, A. Brûlet, and C. Rochas Int. J. Biol. Macromol. 15 1993 131 132
28. C. Rochas, A. Brûlet, and J.-M. Guenet Macromolecules 27 1994 3830 3835
29. J.-M. Guenet Trends Polym. Sci. 4 1996 6 11
30. S.V. Yarotsky, A.S. Shaskov, and A.I. Usov Bioorg. Khim. 3 1977 1135 1137
31. G.K. Hammer, S.S. Battacharjee, and W. Yaphe Carbohydr. Res. 54 1977 C7 C10
32. S.S. Battacharjee, W. Yaphe, and G.K. Hammer Carbohydr. Res. 60 1978 C1 C3
33. A.I. Usov, S.V. Yarotsky, and S.S. Alezandr Biopolymers 19 1980 977 990
34. C. Rochas, M. Rinaudo, and M. Vincendon Biopolymers 19 1980 2165 2175
35. C. Rochas, M. Rinaudo, and M. Vincendon Int. J. Biol. Macromol. 5 1983 111 115
36. C.A. Stortz, and A.S. Cerezo Int. J. Biol. Macromol. 13 1991 101 104
37. M. Ciancia, M.C. Matulewicz, C.A. Stortz, and A.S. Cerezo Int. J. Biol. Macromol. 13 1991 337 340
38. H. Grasdalen, and O. Smidsrød Macromolecules 14 1981 229 231
39. P.S. Belton, V.J. Morris, and S.F. Tanner Int. J. Biol. Macromol. 7 1985 53 56
40. I.T. Norton, E.R. Morris, and D.A. Rees Carbohydr. Res. 134 1984 89 101
41. D. Lamba, A.L. Segre, S. Glover, W. Mackie, B. Sheldrick, and S. Perez Carbohydr. Res. 208 1990 215 230
42. E. Parra, H.N. Caro, J. Jimenez-Barbero, M. Martin Lomas, and M. Bernabe Carbohydr. Res. 208 1990 83 92
43. K. Ueda, M. Saiki, and J.W. Brady J. Phys. Chem. B 105 2001 8629 8638
44. A. Martinsen, G. Skjåk-Bræk, O. Smidsrød, F. Zanetti, and S. Paoletti Carbohydr. Polym. 15 1991 171 193
45. J. Bodenhausen, R.L. Vold, and R.R. Vold J. Magn. Reson. 37 1980 93 106
46. R.R. Ernst, J. Bodenhausen, and A. Wokaun Principles of Nuclear Magnetic Resonance in One and Two Dimensions 1987 Clarendon Oxford 516 527
47. W.P. Aue, E. Bartholdi, and R.R. Ernst J. Chem. Phys. 64 1976 2229 2246
48. T.-L. Hwang, and A.J. Shaka J. Magn. Reson. Ser. B 102 1993 155 165
49. H. Kessler, H. Oschkinat, C. Griesinger, and W. Bermell J. Magn. Reson. 70 1986 106 133
50. V. Sklenař, and J. Feigon J. Am. Chem. Soc. 112 1990 5644 5645
51. A. Bax, and D.G. Davis J. Magn. Reson. 63 1985 207 213
52. P. Dauber-Osguthorpe, V.A. Roberts, V.J. Osguthorpe, J. Wolff, M. Genest, and A.T. Hagler Protein-Struct. Funct. Genet. 4 1988 31 47
53. R. Urbani, A. Di Blas, and A. Cesàro Int. J. Biol. Macromol. 15 1993 24 29
54. D. Neuhaus, and M. Williamson The Nuclear Overhauser Effect in Structural and Conformational Analysis 1989 VCH New York
55. A. Perico, M. Mormino, R. Urbani, A. Cesàro, E. Tylianakis, P. Dais, and D.A. Brant J. Phys. Chem. B 103 1999 8162 8171
56. P.R. Rajamohanan, S. Ganapathy, Ray, S. Siddharth, M.V. Baiger, and R.A. Mashelkar Macromolecules 28 1995 2533 2536
57. G.H. Weiss, J.E. Kiefer, and J.A. Ferretti J. Magn. Reson. 97 1992 227 234
58. D. Lamba, S. Glover, W. Mackie, A. Rashid, B. Sheldrick, and S. Pérez Glycobiology 4 1994 151 163
59. L. Hemmingsen, D.E. Madsen, A.L. Esbensen, L. Olsenb, and S.B. Engelsen Carbohydr. Res. 339 2004 937 948
60. J.-Y. Le Questel, S. Cros, W. Mackie, and S. Pérez Int. J. Biol. Macromol. 17 1995 161 175
61. K. Ueda, and J.W. Brady Biopolymers 38 1996 461 469
62. K. Ueda, and J.W. Brady Biopolymers 41 1997 323 330
63. K. Ueda, T. Ueda, T. Sato, H. Nakayama, and J.W. Brady Carbohydr. Res. 339 2004 1953 1960
64. S. Arnott, W.E. Scott, D.A. Rees, and C.G.A. McNab J. Mol. Biol. 182 1974 1 17
65. K. Ueda, K. Iwama, and H. Nakayama Bull. Chem. Soc. Jpn. 74 2001 2269 2277
66. C.A. Stortz Carbohydr. Res. 337 2001 2311 2323
67. C.A. Stortz, and A.S. Cerezo Biopolymers 70 2003 227 239
68. W. Sicinska, B. Adams, and L. Lerner Carbohydr. Res. 242 1993 29 51
69. G.A. Jeffrey Hydrogen Bonding in Carbohydrates and Hydrate Inclusion Compounds A. Meister Advances in Enzymology and Related Areas of Molecular Biology 1992 Wiley New York 217 254
70. M. Bosco, F. Picotti, A. Radoicovich, and R. Rizzo Biopolymers 53 2000 272 280
71. Cuppo, F.; Bongaerts, K.; Evmenenko, G.; Reynaers, H.; Gamini, A.; Paoletti, S., submitted for publication