Genetic structure of northwestern Spanish brown trout (Salmo trutta L.) populations, differences between microsatellite and allozyme loci

Hereditas

Volumn 141, Issue 3, 2004, Pages 258-271

  Corujo, Miguel ^a   Blanco, G ^a   Vazquez E ^a   Sanchez J A ^a  

^a DEPARTAMENTO DE BIOQUÍMICA Y BIOLOGÍA MOLECULAR   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ALLOENZYME;

ACCURACY; ANIMAL GENETICS; ANIMAL TISSUE; ARTICLE; BROWN TROUT; CONTROLLED STUDY; GENE LOCUS; GENE POOL; GENETIC VARIABILITY; MICROSATELLITE MARKER; NONHUMAN; POPULATION GENETIC STRUCTURE;

ANIMALS; ENZYMES; GENE FREQUENCY; MICROSATELLITE REPEATS; SPAIN; TROUT; VARIATION (GENETICS);

ANIMALIA; SALMO TRUTTA; SALMONIDAE;

EID: 14944380949     PISSN: 00180661     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1601-5223.2004.01860.x     Document Type: Article

References (58)

1. Aebersold, P. B., Winans, G. A., Teel, D. J. et al. 1987. Manual for starch gel electrophoresis: a method for the detection of genetic variation. - NOAA Tech. Rep. NMFS. 61: 1-19.
2. Apostolidis, A., Karakousis, Y. and Triantaphyllidis, C. 1996. Genetic divergence and phylogenetic relationships among Salmo trutta L. (brown trout) populations from Greece and other European countries. - Heredity 76: 551-560.
3. Aurelle, D., Cattaneo-Berrebi, G. and Berrebi, P. 2002. Natural and artificial secondary contact in brown trout (Salmo trutta L.) in the French western Pyrenees assessed by allozymes and microsatellites. - Heredity 89: 171-183.
4. Bernatchez, L. 2001. The evolutionary history of brown trout (Salmo trutta L.) inferred from phylogeographic, nested clade, and mismatch analyses of mitochondrial DNA variation. - Evolution 55: 351-379.
5. Blanco, G., Cagiga, E., Vázquez, E. et al. 1998. Genetic impact of introduced domesticated strain on Spanish native populations of brown trout (Salmo trutta). - In: Cow, I. (ed.), Stocking and introduction of fish. Blackwell, p. 371-379.
6. Bouza, C., Arias, J., Castro, J. et al. 1999. Genetic structure of brown trout, Salmo trutta L., at the southern limit of the distribution range of anadromous form. - Mol. Ecol. 8: 1991-2001.
7. Bouza, C., Castro, J., Sánchez, L. et al. 2001. Allozymic evidence of parapatric differentiation of brown trout (Salmo trutta L.) within an Atlantic river basin of the Iberian Peninsula. - Mol. Ecol. 10: 1455-1469.
8. Cagigas, M. E., Vázquez, E., Blanco, G. et al. 1999a. Genetic effects of introduced hatchery stocks on indigenous brown trout (Salmo trutta L.) populations in Spain. - Ecol. Freshw. Fish. 8: 141-150.
9. Cagigas, M. E., Vázquez, E., Blanco, G. et al. 1999b. Combined assessment of genetic variability in populations of brown trout (Salmo trutta L.). Based on allozymes, microsatellites, and RAPD markers. - Mar. Biotechnol. 1: 286-296.
10. Cagigas, M. E, Vázquez, E., Blanco, G. et al. 2002. Phylogeographical lineages in brown trout (Salmo trutta): investigating microgeographical differentiation between native populations from northern Spain. - Freshw. Biol. 47: 1879-1892.
11. Chakraborty, R., Haag, M., Ryman, N. et al. 1982. Hierarchical gene diversity analysis and its application to brown trout population data. - Hereditas 97: 17-21.
12. Cornuet, J. M., Piry, S., Luikart, G. et al. 1999. Comparison of methods employing multilocus genotypes to select or exclude populations as origins of individuals. - Genetics 144: 2001-2014.
13. Corujo, M. 1999. Nuevos datos de la estructura genética de las poblaciones de trucha común (Salmo trutta L.) en la provincia de León; su integración en la descripción de la península Ibérica. Seminario de Investigación. Área de Genética. Depto de Biología Funcional. Univ. de Oviedo.
14. n microsatellites: a new class of genetic markers for Salmo trutta L. (brown trout). - Heredity 71: 488-496.
15. Estoup, A., Rousset, F., Michalakis, Y. et al. 1998. Comparative analysis of microsatellite and allozyme markers: a case study investigating microgeographic differentiation in brown trout (Salmo trutta). - Mol. Ecol. 7: 339-353.
16. Felsenstein, J. 1993. PHYLIP (Phylogenetic Inference Package, Version 3.5c). - Dept of Genetics, SK, Univ. of Washington, Seattle, WA.
17. Ferguson, A. 1989. Genetic differences among brown trout, Salmo trutta, stocks and their importance for the conservation and management of the species. - Freshw. Biol. 21: 35-46.
18. Fritzner, N. G., Hansen, M. M., Madsen, S. S. et al. 2001. Use of microsatellite markers for identification of indigenous brown trout in a geographical region heavily influenced by stocked domesticated trout. - J. Fish Biol. 58: 1197-1210.
19. García-Marín, J. L. and Pla, C. 1996. Origins and relationships of native populations of Salmo trutta (brown trout) in Spain. - Heredity 77: 313-323.
20. García-Marín, J. L., Jorde, P. E., Ryman, N. et al. 1991. Management implications of genetic differentiation between native and hatchery populations of brown trout (Salmo trutta) in Spain. - Aquaculture 95: 235-249.
21. García-Marín, J. L., Sanz, N. and Pla, C. 1998. Proportions of native and introduced brown trout in adjacent fished and unfished Spanish rivers. - Conserv. Biol. 12: 313-319.
22. García-Marín, J. L., Utter, F. M. and Pla, C. 1999. Postglacial colonization of brown trout in Europe based on distribution of allozyme variants. - Heredity 82: 46-56.
23. Gower, J. C. 1966. Some distances properties of latent roof and vector methods in multivariate analysis. - Biometrika 53: 315-328.
24. Guo, S. W. and Thompson, E. A. 1992. Performing the exact test of Hardy-Weinberg proportion for multiple alleles. - Biometrics 48: 361-372.
25. Guyomard, R. and Krieg, F. 1983. Electrophoretic variation in six populations of brown trout (Salmo trutta L.). - Can. J. Genet. Cytol. 25: 403-413.
26. Hansen, M. M., Loeschcke, V., Rasmussen, G. et al. 1993. Genetic differentiation among Danish brown trout (Salmo trutta) populations. - Hereditas 118: 177-185.
27. Hansen, M. M., Ruzzante, D. E., Nielsen, E. E. et al. 2000. Microsatellite and mitochondrial DNA polymorphism reveals life-history dependent interbreeding between hatchery and wild brown trout (Salmo trutta L). - Mol. Ecol. 9: 583-594.
28. Karl, S. A. and Avise, J. C. 1992. Balancing selection at allozyme loci in oysters: implications from nuclear RFLPS. - Science 256: 100-102.
29. Krieg, F. and Guyomard, R. 1985. Population genetics of French brown trout (Salmo trutta L.): large geographical differentiation of wild populations and high similarity of domesticated stocks. - Génét. Sélection Evol. 17: 225-242.
30. Laikre, L., Antunes, A., Alexandrino, P. et al. 1999. Conservation genetic management of brown trout (Salmo trutta) in Europe. Laikre, L. (ed.) ("Troutconcert": EU FAIR CT97-3882). Stockholm Univ., Sweden.
31. Louis, E. J. and Dempster, E. R. 1987. An exact test for Hardy-Weinberg proportions for multiple alleles. - Biometrics 43: 805-811.
32. Machordom, A., Suárez, J., Almodóvar, A. et al. 2000. Mitochondrial haplotype variation and phylogeography of Iberian brown trout populations. - Mol. Ecol. 9: 1325-1338.
33. Martínez, P., Arias, J., Castro, J. et al. 1993. Differential stocking incidence in brown trout (Salmo trutta) populations from northwestern Spain. - Aquaculture 114: 203-216.
34. Morán, P., Pendás, A. M., García-Vázquez, E. et al. 1991. Failure of stocking policy, of hatchery reared brown trout, Salmo trutta L., in Asturias, Spain, detected using LDH-5* as a genetic marker. - J. Fish Biol. 39: 117-122.
35. Morán, P., Pendás, A. M., García-Vázquez, E. et al. 1995. Estimates of gene flow among neighbouring populations of brown trout. - J. Fish Biol. 46: 593-602.
36. Nei, M. 1972. Genetic distance between populations. - Am. Nat. 106: 283-292.
37. Nei, M. 1973. Analysis of gene diversity in subdivided populations. - Proc. Natl Acad. Sci. USA 70: 3321-3323.
38. Nielsen, E. E., Hansen, M. M. and Loeschcke, V. 1997. Analysis of microsatellite DNA from old scale samples of Atlantic salmon: a comparison of genetic composition over sixty years. - Mol. Ecol. 6: 487-492.
39. Paetkau, D., Calvert, W, Stirling, I. et al. 1995. Microsatellite analysis of population structure in Canadian polar bears. - Mol. Ecol. 4: 347-354.
40. Pogson, G. H., Mesa, K. A. and Boutillier, R. G. 1995. Genetic population structure and gene flow in the atlantic cod Gadus mohuas: a comparison of allozyme loci and nuclear RFLP loci. - Genetics 139: 375-385.
41. Poteaux, C., Bonhomme, F. and Berrebi, P. 1999. Microsatellite polymorphism and genetic impact of restocking in mediterranean brown trout (Salmo trutta L.). - Heredity 82: 645-653.
42. Presa, P. and Guyomard, G. 1996. Conservation of microsatellites in three species of salmonids. - J. Fish Biol. 49: 1326-1329.
43. Rannala, B. and Mountain, J. L. 1997. Detecting immigration by using multilocus genotypes. - Proc. Natl Acad. Sci. USA 94: 9197-9201.
44. Raymond, M. and Rousset, F. 1995. GENEPOP (Version.3.3): a population genetics software for exact tests and ecumenicism. - J. Heredity 86: 248-249.
45. Rice, W. R. 1989. Analyzing table of statistical test. - Evolution 43: 223-225.
46. Ruzzante, D. E., Hansen, M. M. and Meldrup, D. 2001. Distribution of individual inbreeding coefficients, relatedness and influence of stocking on native anadromous brown trout (Salmo trutta) population structure. - Mol. Ecol. 10: 2107-2128.
47. Ryman, N. 1983. Patterns of distribution of biochemical genetic variation in salmonids: differences between species. - Aquaculture 33: 1-21.
48. Ryman, N. 1991. Conservation genetics considerations in fishery management. - J. Fish Biol. (suppl. A) 39: 211-224.
49. Sanz, N., García-Marín, J. L. and Pla, C. 2000. Divergence of brown trout (Salmo trutta) within glacial refugia. - Can. J. Fish. Aquat. Sci. 57: 2201-2210.
50. Shaklee, J. B., Allendorf, F. W., Morizot, D. C. et al. 1990. Gene nomenclature for protein-coding loci in fish. - Trans. Am. Fish. Soc. 119: 2-15.
51. Skaala, Ø., Jørstad, K. E. and Borgstrøm, R. 1996. Genetic impact on two wild brown trout (Salmo trutta L.) populations after released of non-indigenous hatchery spawners. - Can. J. Fish. Aquat. Sci. 53: 2027-2035.
52. Slettan, A., Olsaker, I. and Lie, O. 1995. Atlantic salmon, Salmo salar L., microsatellites at the SSOSL311, SSOSL417, SSOSL85, SSOSL25 loci. - Anim. Genet. 26: 277-285.
53. Smith, C., Koop, B. and Nelson, R. J. 1998. Isolation and characterization of coho salmon (Oncorhynchus kisutch) microsatellites and their use in other salmonids. - Mol. Ecol. 7: 1614-1615.
54. Sušnik, S., Snoj, A., Pohar, J. et al. 1997. The microsatellite marker (BRFO 002) characteristic for different geographically remote brown trout, Salmo trutta L., populations. - Anim. Genet. 28: 370-383.
55. Swofford, D. L. and Selander, R. B. 1989. BIOSYS-2. A computer program for the analysis of allelic variants in population genetics and biochemical systematics. Release 1.7, Illinois Nat. Hist. Survey.
56. Walsh, P. S., Metzger, D. A. and Higuchi, R. 1991. ChelexR 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. - Biotechnics 10: 506-510.
57. Workman, P. L. and Niswander, J. D. 1970. Population studies on southwestern Indian tribes. II. Local genetic differentiation in the Papago. - Am. J. Human Genet. 22: 24-29.
58. Zhang, Q., Marof, M. A. S. and Kelinhofs, A. 1993. Comparative diversity analysis of RFLPS and allozymes within and among populations of Hordeum vulgare ssp. Spontaneum. - Genetics 134: 909-916.