Abscisic acid-inducible nuclear proteins bind to bipartite promoter elements required for ABA response and embryo-regulated expression of the carrot Dc3 gene

Planta

Volumn 220, Issue 3, 2005, Pages 424-433

  Chung, Hwa Jee ^b   Fu, Hong Yong ^c   Thomas, Terry L ^a  

^a TEXAS A AND M UNIVERSITY   (United States)

^b Eugentech Inc   (South Korea)

^c INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

Author keywords

Abscisic acid; Cis regulatory element; Daucus; Seed development; Transcription factor

Indexed keywords

ENZYMES; GENES; ORGANIC ACIDS; PROTEINS; SEED; TISSUE;

BIPARTITE MODULES; PROTEIN BINDING; REGULATORY ELEMENTS; VEGETATIVE TISSUES;

PLANTS (BOTANY);

ABSCISIC ACID; EMBRYOS; ENZYMES; GENES; PLANTS; PROTEINS; SEEDS; TISSUE;

DAUCUS; DAUCUS CAROTA; NICOTIANA TABACUM; TABACUM;

ABSCISIC ACID; DNA BINDING PROTEIN; NUCLEAR PROTEIN; PLANT DNA; VEGETABLE PROTEIN;

ARTICLE; CARROT; GENE EXPRESSION REGULATION; GENETICS; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; PLANT SEED; PRENATAL DEVELOPMENT; PROMOTER REGION; TOBACCO; TRANSGENIC PLANT;

ABSCISIC ACID; BASE SEQUENCE; DAUCUS CAROTA; DNA, PLANT; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; PLANT PROTEINS; PLANTS, GENETICALLY MODIFIED; PROMOTER REGIONS (GENETICS); SEEDS; TOBACCO;

EID: 14944377719     PISSN: 00320935     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00425-004-1366-7     Document Type: Article

References (56)

1. Almoguera C, Jordano J (1992) Developmental and environmental, concurrent expression of sunflower dry-seed-stored low-molecular-weight heat-shock protein and Lea mRNAs. Plant Mol Biol 19:781-792
2. Baker SS, Wilhelm KS, Thomashow MF (1994) The 5′-region of Arabidopsis thaliana cor15a has cis-acting elements that confer cold-, drought- and ABA-regulated gene expression. Plant Mol Biol 24:701-713
3. Beaudoin N, Serizet C, Giraudat J (2000) Interactions between abscisic acid and ethylene signaling cascades. Plant Cell 12:1103-1115
4. Bensmihen S, Rippa S, Lambert G, Jublot D, Pautot V, Granier F, Giraudat J, Parcy F (2002) The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis. Plant Cell 14:1391-1403
5. Block A, Dangl JL, Hahlbrock K, Schulze-Lefert P (1990) Functional borders, genetic fine structure, and distance requirements of cw elements mediating light responsiveness of the parsley chalcone synthase promoter. Proc Natl Acad Sci USA 87:5387-5391
6. Busk PK, Pagès M (1998) Regulation of abscisic acid induced transcription. Plant Mol. Biol 37:425-435
7. Colmenero-Flores JM, Moreno LP, Smith CE, Covarrubias AA (1999) Pvlea-18, a member of a new late-embryogenesis-abundant protein family that accumulates during water stress and in the growing regions of well- irrigated bean seedlings. Plant Physiol 120:93-104
8. Chern M-S, Bobb AJ, Bustos MM (1996) The regulator of MAT2 (ROM2) protein binds to early maturation promoters and represses PvALF-activated expression. Plant Cell 8:305-321
9. Chung H-J (1996) Analysis of the 5′ upstream region of the carrot Dc3 gene: bipartite structure of the Dc3 promoter for embryospecific and ABA-inducible expression. Ph.D. Dissertation, Texas A&M University, College Station
10. Donald RGK, Cashmore AR (1990) Mutation of either G box or I box sequences profoundly affects expression from the Arabidopsis rbcS-la promoter. EMBO J 9:1717-1726
11. Dure L, Crouch M, Harada J, Ho TD, Mundy J, Quatrano R, Thomas T, Sung ZR (1989) Common amino acid sequence domains among the lea proteins of higher plants. Plant Mol Biol 12:475-486
12. Espelund M, Saebøe-Larssen S, Wayne H, Galau GA, Larsen F, Jakobsen KS (1992) Late embryogenesis-abundant genes encoding proteins with different numbers of hydrophilic repeats are regulated differentially by abscisic acid and osmotic stress. Plant J 2:241-252.
13. Finkelstein RR, Lynch TJ (2000) The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell 12:599-609
14. Finkelstein RR, Gampala SSL, Rock CD (2002) Abscisic acid signaling in seeds and seedlings. Plant Cell [Suppl 2002] 15-45
15. Gaubier P, Raynal M, Hull G, Huestis GM, Grellet F, Arenal C, Pagès M, Delseny M (1993) Two different Em-like genes are expressed in Arabidopsis thaliana seeds during maturation. Mol Gen Genet 238:409-418
16. Ghassemian M, Nambara E, Cutler S, Kawaids H, Kamiya Y, McCourt P (2000) Regulation of abscisic acid signaling by the ethylene response pathway in Arabidopsis. Plant Cell 12:1117-1126
17. Giuliano G, Pichersky E, Malik VS, Timko MP, Scolnik PA, Cashmore AR (1988) An evolutionarily conserved protein binding sequence upstream of a plant light regulated gene. Proc Natl Acad Sci USA 85:7089-7093
18. Goldberg RB, de Paiva G, Yadegari R (1994) Plant embryogenesis: zygote to seed. Science 266:605-614
19. Goldsbrough A, Bevan M (1991) New patterns of gene activity in plants detected using an Agrobacterium vector. Plant Mol Biol 16:263-269
20. Guiltinan MJ, Marcotte WR, Quatrano RS (1990) A plant leucine zipper protein that recognizes an abscisic acid response element. Science 250:267-271
21. Hobo T, Asada M, Kowyarna Y, Hattori T (1999) ACGT-containing abscisic acid response element (ABRE) and coupling element 3 (CE3) are functionally equivalent. Plant J 19:679-689
22. Jakoby M, Weisshaar B, geLaser W, Vincente-Carbajosa J, Yiedemann J, Kroj T, Parcy F (2002) bZIP transcription factors in Arabidopsis. Trends Plant Sci 7:106-111
23. Jefferson RA, Kavanagh TA, Bevan MW (1987) GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J 6:3901-3907
24. Kerppola TK (1994) DNA bending specificity among bZIP family proteins. In: Conaway RC, Conaway JW (eds) Transcription: mechanisms and regulation. Raven Press, New York, pp 387-424
25. Kim SY, Thomas TL (1998) A family of basic leucine zipper proteins binds to seed specification elements in the carrot Dc3 gene promoter. J Plant Physiol 152:607-613
26. Kim SY, Chung H-J, Thomas TL (1997) Isolation of a novel class of bZIP transcription factors that interact with ABA-responsive and embryo-specification elements in the Dc3 promoter using a modified yeast one-hybrid system. Plant J 11:1237-1251
27. Kim SY, Ma J, Li Z, Thomas TL (2002) Arabidopsis AB15 subfamily members have distinct DNA-binding and transcriptional activities. Plant Physiol 130:688-697
28. Leung J, Giraudat J (1998) Abscisic acid signal transduction. Annu Rev Plant Physiol Plant Mol Biol 49:199-222
29. Liu Z-B, Ulmasov T, Shi X, Hagen G, Guilfoyle TJ (1994) Soybean GH3 promoter contains multiple auxin-inducible elements. Plant Cell 6:645-657
30. Marcotte WR, Russell SH, Quatrano RS (1989) Abscisic acid-responsive sequences from the Em gene of wheat. Plant Cell 1:969-976
31. Mason HS, DeWald DB, Mullet JE (1993) Identification of a methyl jasmonate-responsive domain in the soybean vspB promoter. Plant Cell 5:241-251
32. McKendree WL, Ferl RJ (1990) Functional elements of the Arabidopsis Adh promoter include the G-box. Plant Mol Biol 19:859-862
33. Michel D, Salamini F, Bartels D, Dale P, Baga M, Szalay A (1993) Analysis of a desiccation and ABA-responsive promoter from the resurrection plant Craterostigma plantagineum. Plant J 4:29-40
34. Mundy J, Chua N-H (1988) Abscisic acid and water-stress induce the expression of a novel rice gene. EMBO J 7:2279-2286
35. Mundy J, Yamaguchi-Shinozaki K, Chua N-H (1990) Nuclear proteins bind conserved elements in the abscisic acid-responsive promoter of rice rob gene. Proc Natl Acad Sci USA 87:1046-1410
36. Nunberg AN, Li Z, Bogue MA, Vivekananda J, Reddy AS, Thomas TL (1994) Developmental and hormonal regulation of sunflower helianthinin genes: proximal promoter sequences confer regionalized seed expression. Plant Cell 6:473-486
37. Pla M, Gómez J, Goday A, Pagés M (1991) Regulation of the abscisic acid-responsive gene rab28 in maize viviparous mutants. Mol Gen Genet 230:394-400
38. Pla M, Vilardell J, Guiltinan MJ, Marcotte WR, Niogret MF (1993) The cis-regulatory element CCACGTGG is involved in ABA and water-stress responses of the maize gene rab28. Plant Mol Biol 21:259-266
39. Rogers JC, Rogers SW (1992) Definition and functional implications of gibberellin and abscisic acid cis-acting hormone response complexes. Plant Cell 4:1443-1451
40. Rogers JC, Lanahan MB, Rogers SW (1994) The cis-acting gibberellin response complex in high-pi α-amylase gene promoters. Plant Physiol 105:151-158
41. Schindler U, Beckmann H, Cashmore AR (1992) TGA1 and G-box binding factors: two distinct classes of Arabidopsis leucine zipper proteins compete for the G-box-like element TGACGTGG. Plant Cell 4:1309-1319
42. Seffens WS, Almoguera C, Wilde HD, Vonder Haar RA, Thomas TL (1990) Molecular analysis of a phylogenetically conserved carrot gene: developmental and environmental regulation. Dev Genet 11:65-76
43. Shen Q, Ho T-HD (1995) Functional dissection of an abscisic acid (ABA)-inducible gene reveals two independent ABA-responsive complexes each containing a G-box and a novel cis-acting element. Plant Cell 7:295-307
44. Shen Q, Zhang P, Ho T-HD (1996) Modular nature of abscisic acid (ABA) response complexes: composite promoter units that are necessary and sufficient for ABA induction of gene expression in barley. Plant Cell 8:1107-1119
45. Siddiqui NU, Chung H-J, Thomas TL, Drew MC (1998) Abscisic acid-dependent and -independent expression of carrot LEA-class gene Dc3 in transgenic tobacco seedlings. Plant Physiol 118:1181-1190
46. Straub PF, Shen Q, Ho T-HD (1994) Structure and promoter analysis of an ABA- and stress-regulated barley gene, HVA1. Plant Mol Biol 26:617-630
47. Suzuki M, Ketterling MG, Li QB, McCarty DR (2003) Viviparous1 alters global gene expression patterns through regulation of abscisic acid signaling. Plant Physiol 132:1664-1677
48. Thomas JC, Guiltinan MJ, Bustos S, Thomas T, Nessler C (1989) Carrot (Daucus carota) hypocotyl transformation using Agrobacterium tumefaciens. Plant Cell Rep 8:354-357
49. Thomas TL, Chung H-J, Nunberg AN (1997) ABA signaling in plant development and growth. In: Adduci P (ed) Signal transduction in plants. Birkäuser, Basel, pp 23-43
50. Velasco R, Salamini F, Bartels D (1998) Gene structure and expression analysis of the drought- and abscisic acid-responsive CDeT11-24 gene family from the resurrection plant Craterostigma plantagineum Hochst. Planta 204:459-471
51. Vilardell J, Goday A, Freire MA, Torrent M, Tartinez C, Torne JM, Pagès M (1990) Gene sequence, developmental expression, and protein phosphorylation of RAB-17 in maize. Plant Mol Biol 14:423-432
52. Vilardell J, Mundy J, Stilling B, Leroux B, Pla M, Freyssinet G, Pagès M (1991) Regulation of the maize rab17 gene promoter in transgenic heterologous systems. Plant Mol Biol 17:985-993
53. Vivekananda J, Drew MC, Thomas TL (1992) Hormonal and environmental regulation of the carrot lea-class gene Dc3. Plant Physiol 100:576-581
54. Weisshaar B, Armstrong GA, Block A, da Costa e Silva O, Hahlbrock K (1991) Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J 10:1777-1786
55. Wilde HD, W.S. Nelson WS, Booij H. de Vries S, Thomas TL (1988) Gene expression programs in embryogenic carrot cultures. Planta 176:205-211
56. Yao Z, Jones DH, Grose C (1992) Site-directed mutagenesis of herpes virus glycoprotein phosphorylation sites by recombination polymerase chain reaction. PCR Methods Appl 1:205-207