Hardware-accelerated protein identification for mass spectrometry

Rapid Communications in Mass Spectrometry

Volumn 19, Issue 6, 2005, Pages 833-837

  Alex, Anish T ^a,b   Dumontier, Michel ^b   Rose, Jonathan S ^a   Hogue, Christopher W V ^b  

^a UNIVERSITY OF TORONTO   (Canada)

^b MOUNT SINAI HOSPITAL   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CLUSTER COMPUTING; DNA SEQUENCES; FIELD PROGRAMMABLE GATE ARRAYS (FPGA); MOLECULAR BIOLOGY; OPERATING COSTS; PEPTIDES;

ACQUISITION TIME; FIELD PROGRAMMABLES; HARDWARE-ACCELERATED; PARALLELIZATIONS; PEPTIDE FRAGMENTS; PROGRAMMABLE GATE ARRAY; PROTEIN IDENTIFICATION; PROTEOMICS; SEARCH TIME; SPECTRA'S;

MASS SPECTROMETRY;

HEAT SHOCK PROTEIN 70; PEPTIDE FRAGMENT; PROTEIN; RAB PROTEIN; SACCHAROMYCES CEREVISIAE PROTEIN;

ALGORITHM; ARTICLE; COMPUTER; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEOMICS; SEQUENCE DATABASE; TANDEM MASS SPECTROMETRY;

EID: 14844320538     PISSN: 09514198     EISSN: None     Source Type: Journal    
DOI: 10.1002/rcm.1853     Document Type: Article

References (10)

1. Choudary JS, Blackstock WP, Creasy DM, Cottrell JS. Proteomics 2001; 1: 651.
2. Taylor JA, Johnson RS. Anal. Chem. 2001; 73: 2594.
3. Eng J, McCormack AL, Yates JR III. J. Am. Soc. Mass Spectrom. 1994; 5: 976.
4. Pappin DJC, Rahman D, Hansen HF, Bartlet-Jones M, Jeffery W, Bleasby AJ. Mass Spectrom. Biol. Sci. 1996; 135.
5. McLuckey SA, Wells JM. Chem. Rev. 2001; 101: 571.
6. Kumar A, Harrison PM, Cheung KH, Lan N, Echols N, Bertone P, Miller P, Gerstein MB, Snyder M. Nat. Biotechnol. 2002; 20: 58.
7. Marshall A. Nat. Biotechnol. 2003; 21: 213.
8. Pappin DJ, Hojrup P, Bleasby AJ. Curr Biol. 1993; 3: 327.
9. Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, Taylor P, Bennett K, Boutilier K, Yang L, Wolting C, Donaldson I, Schandorff S, Shewnarane J, Vo M, Taggart J, Goudreault M, Muskat B, Alfarano C, Dewar D, Lin Z, Michalickova K, Willems AR, Sassi H, Nielsen PA, Rasmussen KJ, Andersen JR, Johansen LE, Hansen LH, Jespersen H, Podtelejnikov A, Nielsen E, Crawford J, Poulsen V, Sorensen BD, Matthiesen J, Hendrickson RC, Gleeson F, Pawson T, Moran MF, Durocher D, Mann M, Hogue CW, Figeys D, Tyers M. Nature. 2002; 415: 180.
10. See: www.gidel.com.