An O(N2) algorithm for discovering optimal Boolean pattern pairs

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Volumn 1, Issue 4, 2004, Pages 159-170

  Bannai, Hideo ^a   Hyyrö, Heikki ^b   Shinohara, Ayumi ^c   Takeda, Masayuki ^c   Nakai, Kenta ^a   Miyano, Satoru ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c KYUSHU UNIVERSITY   (Japan)

Author keywords

Boolean patterns; Pattern discovery; Suffix array; Suffix tree

Indexed keywords

BOOLEAN ALGEBRA; DNA SEQUENCES; FUNCTIONS; GENETIC ENGINEERING; PATTERN RECOGNITION; PROBLEM SOLVING; RNA; SET THEORY; TREES (MATHEMATICS);

BOOLEAN PATTERNS; PATTERN DISCOVERY; SUFFIX ARRAYS; SUFFIX TREES;

ALGORITHMS;

DNA; MESSENGER RNA;

3' UNTRANSLATED REGION; ALGORITHM; ARTICLE; AUTOMATED PATTERN RECOGNITION; BIOLOGY; COMPUTER PROGRAM; DNA SEQUENCE; FUNGAL GENE; GENETICS; HUMAN; METHODOLOGY; NUCLEOTIDE SEQUENCE; STATISTICAL MODEL; THEORETICAL MODEL;

3' UNTRANSLATED REGIONS; ALGORITHMS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DNA; GENES, FUNGAL; HUMANS; MODELS, STATISTICAL; MODELS, THEORETICAL; PATTERN RECOGNITION, AUTOMATED; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 14744276878     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2004.36     Document Type: Conference Paper

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