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Volumn 3, Issue 4, 2004, Pages 483-492

Evaluation of window cohabitation of DNA sequencing errors and lowest PHRED quality values

Author keywords

BLAST; DNA sequence quality; PHRED; Quality window; SAGE

Indexed keywords

COMPUTER PROGRAM; CONFERENCE PAPER; DNA DETERMINATION; DNA SEQUENCE; ERROR; GENE CLUSTER; PREDICTION; QUALITATIVE ANALYSIS; QUALITY CONTROL; SEQUENCE DATABASE; SERIAL ANALYSIS OF GENE EXPRESSION;

EID: 14644411828     PISSN: 16765680     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper
Times cited : (4)

References (12)
  • 2
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B. and Green, P. (1998). Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8: 186-194.
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 3
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B., Hillier, L., Wendl, M.C. and Green, P. (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8: 175-185.
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 4
    • 14644397677 scopus 로고    scopus 로고
    • Green, P. (2004). PHRED Documentation. http://www.phrap.org/phrap.docs/ phred.html. Acessed August 29, 2004.
    • (2004) PHRED Documentation
    • Green, P.1
  • 6
    • 14644395895 scopus 로고    scopus 로고
    • DNA sequences base calling by PHRED: Error pattern analysis
    • Prosdocimi, F., Peixoto, F.C. and Ortega, J.M. (2003). DNA sequences base calling by PHRED: Error pattern analysis. R. Tecnol. Inf. 3: 107-110.
    • (2003) R. Tecnol. Inf. , vol.3 , pp. 107-110
    • Prosdocimi, F.1    Peixoto, F.C.2    Ortega, J.M.3
  • 7
    • 14644392598 scopus 로고    scopus 로고
    • README for stand-alone BLAST (2004). ftp://ftp.ncbi.nlm.nih.gov/blast/ documents/blast.txt. Acessed August 29, 2004.
    • (2004) README for Stand-alone BLAST
  • 8
    • 0031955430 scopus 로고    scopus 로고
    • Estimation of errors in "raw" DNA sequences: A validation study
    • Richterich, P. (1998). Estimation of errors in "raw" DNA sequences: a validation study. Genome Res. 8: 251-259.
    • (1998) Genome Res. , vol.8 , pp. 251-259
    • Richterich, P.1
  • 10
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T.F. and Waterman, M.S. (1981). Identification of common molecular subsequences. J. Mol. Biol. 147: 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 12
    • 0034744288 scopus 로고    scopus 로고
    • Basecalling with life trace
    • Walther, D., Bartha, G. and Morris, M. (2001). Basecalling with life trace. Genome Res. 11: 875-888.
    • (2001) Genome Res. , vol.11 , pp. 875-888
    • Walther, D.1    Bartha, G.2    Morris, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.