A single nucleotide polymorphism-based technique for specific characterization of YO and YN isolates of Potato virus Y (PVY)

Journal of Virological Methods

Volumn 125, Issue 1, 2005, Pages 83-93

  Jacquot, Emmanuel ^a   Tribodet, Michel ^a   Croizat, Flora ^a   Balme Sinibaldi, Valérie ^a,b   Kerlan, Camille ^a  

^a CEMAGREF   (France)

^b FNPPPT   (France)

Author keywords

Co detection; Detection assay; One step fluorescent RT PCR; Potyvirus; TaqMan technology

Indexed keywords

ARTICLE; CONTROLLED STUDY; EXTRACTION; FLUORESCENCE; GEL; GENETIC LINKAGE; IMMUNOASSAY; MOLECULE; NECROSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT LEAF; POTYVIRUS; PRIORITY JOURNAL; RELIABILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SAMPLE; SAMPLING; SENSITIVITY ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM; SYMPTOM; TOBACCO; VIRUS CHARACTERIZATION; VIRUS DETECTION; VIRUS INFECTION;

NICOTIANA TABACUM; POTATO VIRUS Y; POTYVIRUS; SOLANUM TUBEROSUM; TABACUM;

EID: 14544288621     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2005.01.003     Document Type: Article

References (56)

1. Abdelmaksoud, H.M., Gamal Eldin, A.S., 2002. The complete nucleotide sequence of the Potato virus Y strain N-Egypt, unpublished (GenBank Accession number: AF522296).
2. V. Balme-Sinibaldi, M. Tribodet, L. Guilbaud, O. Pierrugues, L. Glais, M. Jacquemond, C. Kerlan, and E. Jacquot Characterization of Potato virus Y (PVY) molecular determinants involved in tobacco vein necrosis and potato tuber necrosis. The 12th EAPR Virology Section Meeting Rennes, France, June 13-19 2004 49 (abstracts)
3. Berckx, R., 1967. Methodische untersuchungen über den serologischen nachweis pflanzenpathogener viren mit dem bentonit-flockungstest, den latex-text und dem bariumsulfat test. Phytopathologische Zeitschrift 58, 1-17.
4. B. Blanco-Urgoiti, M. Tribodet, S. Leclere, F. Ponz, C. Perez de San Roman, F.J. Legorburu, and C. Kerlan Characterization of potato potyvirus Y (PVY) isolates from seed potato batches. Situation of the NTN, Wilga and Z isolates Eur. J. Plant Pathol. 104 1998 811 819
5. C strains using RT-PCR J. Virol. Methods 102 1-2 2002 103 112
6. N. Boonham, and I. Barker Strain-specific recombinant antibodies to potato virus Y potyvirus J. Virol. Methods 74 2 1998 193 199
7. Brunt, A.A., Crabtree, K., Dallwitz, M.J., Gibbs, A.J., Watson, L., Zurcher, E.J., 1996. 'Plant Viruses Online: Descriptions and Lists from the VIDE Database. Version: August 20, 1996', http://biology.anu.edu.au/Groups/MES/vide/ .
8. N) found recently in Poland Potato Res. 34 1991 179 182
9. M.F. Clark, and A.N. Adams Characteristics of the microplate method of enzyme-linked immunoassay for the detection of plant viruses J. Gen. Virol. 34 1977 475 783
10. De Bokx, J.A., Huttinga, H., 1981. Potato virus Y. CMI/AAB Description of Plant Viruses No. 242, CMI/AAB, Slough, England, 6 pp.
11. W.G. Dougherty, and J.C. Carrington Expression and function of potyviral gene products Ann. Rev. Phytopathol. 26 1988 123 143
12. P. Ellis, R. Stace-Smith, G. Bowler, and D.J. Mackenzie Production of monoclonal antibodies for detection and identification of strains of potato virus Y Can. J. Plant Pathol. 18 1996 64 70
13. F. Fabre, C. Kervarrec, L. Mieuzet, G. Riault, A. Vialatte, and E. Jacquot Improvement of Barley yellow dwarf virus-PAV detection in single aphids using a fluorescent real time RT-PCR J. Virol. Methods 110 1 2003 51 60
14. H. Fakhfakh, F. Vilaine, M. Makni, and C. Robaglia Cell-free cloning and biolistic inoculation of an infectious cDNA of potato virus Y J. Gen. Virol. 77 1996 519 523
15. P. Gugerli, and P. Fries Characterization of monoclonal antibodies to potato virus Y and their use for virus detection J. Gen. Virol. 64 1983 2471 2477
16. L. Glais, M. Tribodet, J.P. Gauthier, S. Astier-Manifacier, C. Robaglia, and C. Kerlan RFLP mapping of the whole genome of ten viral isolates representative of different biological groups of potato virus Y Arch. Virol. 143 1998 2077 2091
17. L. Glais, C. Kerlan, and C. Robaglia Variability and evolution of potato virus Y, the type species of the Potyvirus genus J.A. Khan J. Dijkstra Plant Viruses as Molecular Pathogens 2001 Food Products Press, The Haworth Press Inc. New York
18. (N) isolates Arch. Virol. 147 2 2002 363 378
19. NTN non-recombinant genome The 12th EAPR Virology Section Meeting Rennes-France, June 13-19 2004 50 (abstracts)
20. L. Gow, N. Boonham, I. Barker, and G.D. Foster Investigating genes involved in symptom induction for potato virus Y The 12th EAPR Virology Section Meeting Rennes, France, June 13-19 2004 57 (abstracts)
21. R. Health, R.J. Sward, J.R. Moran, A.J. Mason, and N.D. Hallam Biological characterization of six Australian isolates of potato virus Y and their serological detection by ELISA Aust. J. Agric. Res. 38 1987 395 402
22. G. Jakab, E. Droz, G. Brigneti, D. Baulcombe, and P. Malnoe Infectious in vivo and in vitro transcripts from a full-length cDNA clone of PVY-N605: a Swiss necrotic isolate of potato virus Y J. Gen. Virol. 78 12 1997 3141 3145
23. C. Kerlan, M. Tribodet, L. Glais, and M. Guillet Variability of potato virus Y in potato crops in France J. Phytopathol. 147 1999 643 651
24. B.A. Latore, V. Flores, and G. Marholz Effect of potato virus Y on growth, yield and chemical composition of flue-cured tobacco in Chile Plant Dis. 68 1984 884 886
25. M. Le Romancer, C. Kerlan, and M. Nedellec Biological characterization of various geographical isolates of potato virus Y inducing superficial necrosis on potato tubers Plant Pathol. 43 1994 138 144
26. D.Z. Maat, and H. Huttinga Serology J.A. De Bokx J.P.H. van der Want Viruses of Potatoes and Seed-Potato Production 1987 Pudoc Wageningen, NL
27. V. Marie-Jeanne Tordo, A.M. Chachulska, H. Fakhfakh, M. Le Romancer, C. Robaglia, and S. Astier-Manifacier Sequence polymorphism in the 5′ NTR and in the P1 coding region of potato virus Y genomic RNA J. Gen. Virol. 76 1995 939 949
28. J. Matousek, J. Ptacek, P. Dedic, and J. Schubert Analysis of variability of P1 gene region of N strain of potato virus Y using temperature-gradient gel electrophoresis and DNA heteroduplex analysis Acta Virol. 44 1 2000 41 46
29. J.G. Mc Donald, and G.T. Kristjansson Properties of strains of potato virus YN in North America Plant Dis. 77 1 1993 87 89
30. O strain groups Am. Potato J. 73 1996 309 315
31. R.G. Milne The Plant Viruses-4 R.G. Milne The Filamentous Plant Viruses 1988 Plenum Press New York, London
32. NTN) using a three-primer PCR-based in the coat protein gene J. Virol. Methods 109 1 2003 63 68
33. X. Nie, and R.P. Singh A novel usage of random primers for multiplex RT-PCR detection of virus and viroid in aphids, leaves, and tubers J. Virol. Methods 91 2001 37 49
34. X. Nie, and R.P. Singh A new approach for the simultaneous differentiation of biological and geographical strains of Potato virus Y by uniplex and multiplex RT-PCR J. Virol. Methods 104 1 2002 41 54
35. (NTN) isolates by multiplex RT-PCR J. Virol. Methods 113 2 2003 69 77
36. P.J. Oefner Sequence variation and the biological function of genes: methodological and biological considerations J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 25;782 1-2 2002 3 25
37. H. Ounouna, C. Kerlan, P. Lafaye, M.J. Loukili, and A. ElGaaied Production of monoclonal antibodies against synthetic peptides of the N-terminal region of Potato virus Y coat protein and their use in PVY strain differentiation Plant Pathol. 51 2002 487 494
38. K. Oshima, A.K. Inoue, Y. Ishikawa, E. Shikata, and H. Takashi Production and application of monoclonal antibodies specific to ordinary strain and necrotic strain of potato virus Y Ann. Phytopathol. Soc. Jpn. 56 1990 508 514
39. C. Robaglia, M. Durand-Tardif, M. Tronchet, G. Boudazin, S. Astier-Manifacier, and F. Casse-Delbart Nucleotide sequence of potato virus Y (N strain) genomic RNA J. Gen. Virol. 70 1989 935 947
40. C.A. Roberts, R.G. Dietzgen, L.A. Heelan, and D.J. Maclean Real-time RT-PCR fluorescent detection of tomato spotted wilt virus J. Virol. Methods 88 2000 1 8
41. A. Rosner, and L. Maslenin Differentiating PVYNTN by unique single-restriction cleavage of PCR products Potato Res. 42 1999 215 221
42. (N) by annealing to reference RNA transcripts J. Virol. Methods 97 1-2 2001 125 131
43. A. Rosner, and L. Maslenin Tagging of viral RNA transcripts with strain-specific oligonucleotides: characterization and application J. Virol. Methods 110 1 2003 105 109
44. A. Sanz, M. Cambra, C. Perez de San Roman, J.G. Miguet, E. Cortés, M.T. Gorris, and C. Vela Preparation of additional monoclonal antibodies for detection and discrimination of potato virus Y isolates infecting potato Potato Res. 33 1990 365 375
45. D.D. Shukla, C.W. Ward, and A.A. Brunt The Potyviridae 1994 Cambridge University Press Cambridge 516 pp
46. N and its use in ELISA and DIBA assays Can. J. Plant Pathol. 15 1993 293 300
47. M. Singh, and R.P. Singh Nucleotide sequence and genome organization of a Canadian isolate of the common strain of potato virus Y (PVYO) Can. J. Plant Pathol. 18 1996 209 224
48. R. Sigvald The relative efficiency of some aphid species as vector of potato virus Y Potato Res. 27 1984 285 290
49. K.M. Smith Composite nature of certain potato viruses of the mosaic group as revealed by the use of plant indicators. Proc. R. Soc. Lond. B 109 1931 251 267
50. M. Szemes, M.M. Klerks, J.F. van den Heuvel, and C.D. Schoen Development of a multiplex AmpliDet RNA assay for simultaneous detection and typing of potato virus Y isolates J. Virol. Methods 100 1-2 2002 83 96
51. J. Talley, F.H.J.B. Warren, L. Torrance, and R.A.C. Jones A simple kit for detection of plant viruses by the latex serological test Plant Pathol. 29 1980 77 79
52. V. Thole, T. Dalmay, J. Burgyan, and E. Balazs Cloning and sequencing of Potato virus Y (Hungarian isolate) genomic RNA Gene 123 1993 149 156
53. D.E. Van der Zaag Yield reduction in relation to virus infection J.A. De Bokx J.P.H. van des Want Viruses of Potatoes and Seed-Potato Production second ed. 1987 Pudoc Wageningen 149 150
54. H.J. Vetten, U. Ehlers, and H.L. Paul Detection of potato viruses Y and A in tubers by enzyme-linked immunosorbent assay after artificial break of dormancy Phytopathologische Zeitschrift 108 1983 41 53
55. K. Walsh, J. North, I. Barker, and N. Boonham Detection of different strains of Potato virus Y and their mixed infections using competitive fluorescent RT-PCR J. Virol. Methods 91 2 2001 167 173
56. D.G.A. Walkey, and M.J.W. Webb The use of a simple electron microscope serology procedure to observe relationships of seven potyviruses Phytopathologische Zeitschrift 110 1984 319 327