Protein fold comparison by the alignment of topological strings

Protein Engineering

Volumn 16, Issue 12, 2003, Pages 949-955

  Johannissen, Linus O ^a,b   Taylor, William R ^a  

^a NATIONAL INSTITUTE FOR MEDICAL RESEARCH   (United Kingdom)

^b UNIVERSITY OF LEICESTER   (United Kingdom)

Author keywords

Classification; Evolution; Fold; Protein; Topology; Trees

Indexed keywords

ALGORITHM; ARTICLE; PHYLOGENETIC TREE; PRIORITY JOURNAL; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN STRUCTURE;

EID: 1442359492     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/gzg128     Document Type: Article

References (22)

1. Artymiuk, P.J., Rice, D.W., Mitchell, E.M. and Willett, P. (1990) Protein Eng., 4, 39-43.
2. Efimov, A.V. (1993) Prog. Biophys. Mol. Biol., 60, 201-239.
3. Efimov, A.V. (1997) Proteins, 28, 241-260.
4. Finkelstein, A.V. and Ptitsyn, O.B. (1987) Prog. Biophys. Mol. Biol., 50, 171-190.
5. Flores, T.P., Moss, D.S. and Thornton, J.M. (1994) Protein Eng., 7, 31-37.
6. Flower, D.R. (1998) Protein Eng., 11, 723-727.
7. Gilbert, D., Westhead, D., Nagano, N. and Thornton, J.M. (1999) Bioinformatics, 15, 317-326.
8. Hadley, C. and Jones, D.T. (1995) Structure, 7, 1099-1112.
9. Harrison, A., Pearl, F., Mott, R., Thornton, J. and Orengo, C. (2002) J. Mol. Biol., 323, 909-926.
10. Holm, L. and Sander, C. (1997) Nucleic Acids Res., 25, 231-234.
11. Koch, I., Kaden, F. and Selbig, J. (1992) Proteins, 12, 314-323.
12. Mitchell, E.M., Artymiuk, P.J., Rice, D.W. and Willett, P. (1989) J. Mol. Biol., 212, 151-166.
13. Mizuguchi, K., Deane, C.M., Blundell, T.L. and Overington, J.P. (1998) Protein Sci., 7, 2469-2471
14. Murzin, A.G., Brenner, S.E., Hubbard, T. and Chothia, C. (1995) J. Mol. Biol., 247, 536-540.
15. Orengo, C.A., Michie, A.D., Jones, S., Jones, D.T., Swindells, M.B. and Thornton, J.M. (1997) Structure, 5, 1093-1108.
16. Ptitsyn, O.B. and Finkelstein, A.V. (1980) Q. Rev. Biophys., 13, 339-386.
17. Taylor, W.R. (2000) Biochem. Soc. Trans, 28, 264-269.
18. Taylor, W.R. (2001) J. Mol. Biol., 310, 1135-1150.
19. Taylor, W.R. (2002a) In Mewes, B. and Weiss, H.S. (eds), Bioinformatics and Genome Analysis. Springer-Verlag, Berlin, Ernst Schering Research Foundation Workshop Vol. 38, pp. 133-148.
20. Taylor, W.R. (2002b) Nature, 416, 657-660.
21. Taylor, W.R. (2002c) Mol. Cell. Proteomics, 1, 334-339.
22. Taylor, W.R. and Orengo, C.A. (1989) J. Mol. Biol., 208, 1-22.