메뉴 건너뛰기




Volumn 90, Issue 1, 2004, Pages 146-151

The first complete monogenean ribosomal RNA gene operon: Sequence and secondary structure of the Gyrodactylus salaris Malmberg, 1957, large subunit ribosomal RNA gene

Author keywords

[No Author keywords available]

Indexed keywords

PARASITOLOGY;

EID: 1442323888     PISSN: 00223395     EISSN: None     Source Type: Journal    
DOI: 10.1645/GE-111R3     Document Type: Article
Times cited : (19)

References (39)
  • 2
    • 0033652934 scopus 로고    scopus 로고
    • Characterisation of the Gyrodactylus salaris Malmberg, 1957 (Platyhelminthes: Monogenea) ribosomal intergenic spacer (IGS) DNA
    • COLLINS, C. M., AND C. O. CUNNINGHAM. 2000. Characterisation of the Gyrodactylus salaris Malmberg, 1957 (Platyhelminthes: Monogenea) ribosomal intergenic spacer (IGS) DNA. Parasitology 121: 555-563.
    • (2000) Parasitology , vol.121 , pp. 555-563
    • Collins, C.M.1    Cunningham, C.O.2
  • 3
    • 0030961936 scopus 로고    scopus 로고
    • Species variation within the internal transcribed spacer (ITS) region of Gyrodactylus (Monogenea; Gyrodactylidae) ribosomal RNA genes
    • CUNNINGHAM, C. O. 1997. Species variation within the internal transcribed spacer (ITS) region of Gyrodactylus (Monogenea; Gyrodactylidae) ribosomal RNA genes. Journal of Parasitology 83: 215-219.
    • (1997) Journal of Parasitology , vol.83 , pp. 215-219
    • Cunningham, C.O.1
  • 4
    • 0033944805 scopus 로고    scopus 로고
    • Sequence and secondary structure variation in the Gyrodactylus (Platyhelminthes: Monogenea) ribosomal RNA gene array
    • -, H. ALIESKY, AND C. M. COLLINS. 2000. Sequence and secondary structure variation in the Gyrodactylus (Platyhelminthes: Monogenea) ribosomal RNA gene array. Journal of Parasitology 86: 567-576.
    • (2000) Journal of Parasitology , vol.86 , pp. 567-576
    • Aliesky, H.1    Collins, C.M.2
  • 5
    • 0028990178 scopus 로고
    • Phylogenetic analysis of Gyrodactylus salaris Malmberg, 1957 based on the small subunit (18S) ribosomal RNA gene
    • -, D. M. MCGILLIVRAY, AND K. MACKENZIE. 1995. Phylogenetic analysis of Gyrodactylus salaris Malmberg, 1957 based on the small subunit (18S) ribosomal RNA gene. Molecular and Biochemical Parasitology 71: 139-142.
    • (1995) Molecular and Biochemical Parasitology , vol.71 , pp. 139-142
    • McGillivray, D.M.1    Mackenzie, K.2
  • 6
    • 0029066696 scopus 로고
    • Discrimination between Gyrodactylus salaris, G. derjavini and G. truttae (Platyhelminthes: Monogenea) using restriction fragment length polymorphisms and an oligonucleotide probe within the small subunit ribosomal RNA gene
    • -, -, -, AND W. T. MELVIN. 1995. Discrimination between Gyrodactylus salaris, G. derjavini and G. truttae (Platyhelminthes: Monogenea) using restriction fragment length polymorphisms and an oligonucleotide probe within the small subunit ribosomal RNA gene. Parasitology 111: 87-94.
    • (1995) Parasitology , vol.111 , pp. 87-94
    • Melvin, W.T.1
  • 7
    • 0033998550 scopus 로고    scopus 로고
    • Genetic markers in ribosomal DNA for the identification of members of the genus Anisakis (Nematoda: Ascaridoidea) defined by polymerase chain reaction-based restriction fragment length polymorphism
    • D'AMELIO, S., K. D. MATHIOPOULOS, C. P. SANTOS, O. N. PUGACHEV, S. C. WEBB, M. PICANCO, AND L. PAGGI. 2000. Genetic markers in ribosomal DNA for the identification of members of the genus Anisakis (Nematoda: Ascaridoidea) defined by polymerase chain reaction-based restriction fragment length polymorphism. International Journal for Parasitology 30: 223-226.
    • (2000) International Journal for Parasitology , vol.30 , pp. 223-226
    • D'amelio, S.1    Mathiopoulos, K.D.2    Santos, C.P.3    Pugachev, O.N.4    Webb, S.C.5    Picanco, M.6    Paggi, L.7
  • 8
    • 0028828164 scopus 로고
    • Effects of sequence alignment on the phylogeny of Sarcocystis deduced from 18S rDNA sequences
    • ELLIS, J., AND D. MORRISON. 1995. Effects of sequence alignment on the phylogeny of Sarcocystis deduced from 18S rDNA sequences. Parasitology Research 81: 696-699.
    • (1995) Parasitology Research , vol.81 , pp. 696-699
    • Ellis, J.1    Morrison, D.2
  • 9
    • 0034983807 scopus 로고    scopus 로고
    • Molecular taxonomic, diagnostic and genetic studies of parasitic helminths
    • GASSER, R. B. 2001. Molecular taxonomic, diagnostic and genetic studies of parasitic helminths. International Journal for Parasitology 31: 860-864.
    • (2001) International Journal for Parasitology , vol.31 , pp. 860-864
    • Gasser, R.B.1
  • 10
    • 0028901939 scopus 로고
    • Characterisation of taeniid cestode species by PCR-RFLP of ITS2 ribosomal DNA
    • -, AND N. B. CHILTON. 1995. Characterisation of taeniid cestode species by PCR-RFLP of ITS2 ribosomal DNA. Acta Tropica 59: 31-40.
    • (1995) Acta Tropica , vol.59 , pp. 31-40
    • Chilton, N.B.1
  • 11
    • 0028871817 scopus 로고
    • Genetic markers for closely-related parasitic nematodes
    • -, AND H. HOSTE. 1995. Genetic markers for closely-related parasitic nematodes. Molecular and Cellular Probes 9: 315-320.
    • (1995) Molecular and Cellular Probes , vol.9 , pp. 315-320
    • Hoste, H.1
  • 12
    • 0031171738 scopus 로고    scopus 로고
    • Identification of parasitic nematodes by PCR-SSCP of ITS-2 rDNA
    • -, AND J. R. MONTI. 1997. Identification of parasitic nematodes by PCR-SSCP of ITS-2 rDNA. Molecular and Cellular Probes 11: 201-209.
    • (1997) Molecular and Cellular Probes , vol.11 , pp. 201-209
    • Monti, J.R.1
  • 13
  • 14
    • 0022309821 scopus 로고
    • Transcription of mouse rDNA terminates downstream of the 3′ end of 28S RNA and involves interaction of factors with repeated sequences in the 3′ spacer
    • GRUMMT, I., U. MAIER, A. OHRLEIN, N. HASSOUNA, AND J. P. BACHELLERIE. 1985. Transcription of mouse rDNA terminates downstream of the 3′ end of 28S RNA and involves interaction of factors with repeated sequences in the 3′ spacer. Cell 43: 801-810.
    • (1985) Cell , vol.43 , pp. 801-810
    • Grummt, I.1    Maier, U.2    Ohrlein, A.3    Hassouna, N.4    Bachellerie, J.P.5
  • 15
    • 0021770476 scopus 로고
    • The complete nucleotide sequence of mouse 28S rRNA gene
    • HASSOUNA, N., B. MICHOT, AND J. P. BACHELLERIE. 1984. The complete nucleotide sequence of mouse 28S rRNA gene. Nucleic Acids Research 12: 3563-3583.
    • (1984) Nucleic Acids Research , vol.12 , pp. 3563-3583
    • Hassouna, N.1    Michot, B.2    Bachellerie, J.P.3
  • 16
    • 0033485458 scopus 로고    scopus 로고
    • Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast
    • JOSEPH, N., E. KRAUSKOPF, M. I. VERA, AND B. MICHOT. 1999. Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast. Nucleic Acids Research 27: 4533-4540.
    • (1999) Nucleic Acids Research , vol.27 , pp. 4533-4540
    • Joseph, N.1    Krauskopf, E.2    Vera, M.I.3    Michot, B.4
  • 17
    • 0031708472 scopus 로고    scopus 로고
    • Comparison of the intergenic spacers and 3′ end regions of the large subunit (28S) ribosomal RNA gene from three species of Schistosoma
    • KANE, R. A., AND D. ROLLINSON. 1998. Comparison of the intergenic spacers and 3′ end regions of the large subunit (28S) ribosomal RNA gene from three species of Schistosoma. Parasitology 117: 235-242.
    • (1998) Parasitology , vol.117 , pp. 235-242
    • Kane, R.A.1    Rollinson, D.2
  • 18
    • 0033178290 scopus 로고    scopus 로고
    • Structural equivalence in the transcribed spacers of pre-rRNA transcripts in Schizosaccharomyces pombe
    • LALEV, A. I., AND R. N. NAZAR. 1999. Structural equivalence in the transcribed spacers of pre-rRNA transcripts in Schizosaccharomyces pombe. Nucleic Acids Research 27: 3071-3078.
    • (1999) Nucleic Acids Research , vol.27 , pp. 3071-3078
    • Lalev, A.I.1    Nazar, R.N.2
  • 19
    • 0029162102 scopus 로고
    • Molecular phylogenetics of the four Schistosoma groups determined with partial 28S ribosomal RNA gene sequences
    • LITTLEWOOD, D. T. J., AND D. A. JOHNSTON. 1995. Molecular phylogenetics of the four Schistosoma groups determined with partial 28S ribosomal RNA gene sequences. Parasitology 111: 167-175.
    • (1995) Parasitology , vol.111 , pp. 167-175
    • Littlewood, D.T.J.1    Johnston, D.A.2
  • 20
    • 0033046699 scopus 로고    scopus 로고
    • The interrelationships of all major groups of Platyhelminthes: Phylogenetic evidence from morphology and molecules
    • -, K. ROHDE, AND K. A. CLOUGH. 1999. The interrelationships of all major groups of Platyhelminthes: Phylogenetic evidence from morphology and molecules. Biological Journal of the Linnean Society 66: 75-114.
    • (1999) Biological Journal of the Linnean Society , vol.66 , pp. 75-114
    • Rohde, K.1    Clough, K.A.2
  • 24
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • MATHEWS, D. H., J. SABINA, M. ZUKER, AND D. H. TURNER. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. Journal of Molecular Biology 288: 911-940.
    • (1999) Journal of Molecular Biology , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 25
    • 0020480564 scopus 로고
    • Sequence and secondary structure of mouse 28S rRNA 5′-terminal domain. Organisation of the 5.8S-28S rRNA complex
    • MICHOT, B., J.-P. BACHELLERIE, AND F. RAYNAL. 1982. Sequence and secondary structure of mouse 28S rRNA 5′-terminal domain. Organisation of the 5.8S-28S rRNA complex. Nucleic Acids Research 10: 5273-5283.
    • (1982) Nucleic Acids Research , vol.10 , pp. 5273-5283
    • Michot, B.1    Bachellerie, J.-P.2    Raynal, F.3
  • 26
    • 0033151868 scopus 로고    scopus 로고
    • Evolutionarily conserved structural features in the ITS2 of mammalian pre-rRNAs and potential interactions with the snoRNA U8 detected by comparative analysis of new mouse sequences
    • -, N. JOSEPH, S. MAZAN, AND J.-P. BACHELLERIE. 1999. Evolutionarily conserved structural features in the ITS2 of mammalian pre-rRNAs and potential interactions with the snoRNA U8 detected by comparative analysis of new mouse sequences. Nucleic Acids Research 27: 2271-2282.
    • (1999) Nucleic Acids Research , vol.27 , pp. 2271-2282
    • Joseph, N.1    Mazan, S.2    Bachellerie, J.-P.3
  • 28
    • 0034002632 scopus 로고    scopus 로고
    • Phylogeny of the Monopisthocotylea and Polyopisthocotylea (Platyhelminthes) inferred from 28S rDNA sequences
    • -, -, AND J.-L. JUSTINE. 2000. Phylogeny of the Monopisthocotylea and Polyopisthocotylea (Platyhelminthes) inferred from 28S rDNA sequences. International Journal for Parasitology 30: 171-185.
    • (2000) International Journal for Parasitology , vol.30 , pp. 171-185
    • Justine, J.-L.1
  • 29
    • 0031664649 scopus 로고    scopus 로고
    • Trematode and monogenean rRNA ITS2 secondary structures support a four-domain model
    • MORGAN, J. A. T., AND D. BLAIR. 1998. Trematode and monogenean rRNA ITS2 secondary structures support a four-domain model. Journal of Molecular Evolution 47: 406-419.
    • (1998) Journal of Molecular Evolution , vol.47 , pp. 406-419
    • Morgan, J.A.T.1    Blair, D.2
  • 30
    • 0036162563 scopus 로고    scopus 로고
    • Phylogenetics of the Monogenea-Evidence from a medley of molecules
    • OLSON, P. D., AND D. T. J. LITTLEWOOD. 2002. Phylogenetics of the Monogenea-Evidence from a medley of molecules. International Journal for Parasitology 32: 233-244.
    • (2002) International Journal for Parasitology , vol.32 , pp. 233-244
    • Olson, P.D.1    Littlewood, D.T.J.2
  • 31
    • 0024150216 scopus 로고
    • Evolutionary conservation of structure and function of high molecular weight ribosomal RNA
    • RAUÉ, H. A., J. KLOOTWIJK, AND W. MUSTERS. 1988. Evolutionary conservation of structure and function of high molecular weight ribosomal RNA. Progress in Biophysics and Molecular Biology 51: 77-129.
    • (1988) Progress in Biophysics and Molecular Biology , vol.51 , pp. 77-129
    • Raué, H.A.1    Klootwijk, J.2    Musters, W.3
  • 32
    • 0002574521 scopus 로고
    • rRNA: From structure to function
    • W. E. Hill, A. Dahlberg, R. A. Garrett, P. B. Moore, D. Sclessinger, and J. R. Warner (eds.). American Society for Microbiology, Washington D.C
    • -, W. MUSTERS, C. A. RUTGERS, J. V. T. RIET, AND R. J. PLANTA. 1990. rRNA: From structure to function. In The ribosome: Structure, function and evolution, W. E. Hill, A. Dahlberg, R. A. Garrett, P. B. Moore, D. Sclessinger, and J. R. Warner (eds.). American Society for Microbiology, Washington D.C., p. 217-235.
    • (1990) The Ribosome: Structure, Function and Evolution , pp. 217-235
    • Musters, W.1    Rutgers, C.A.2    Riet, J.V.T.3    Planta, R.J.4
  • 33
    • 8544234243 scopus 로고    scopus 로고
    • Molecular taxonomy and phylogeny of entomopathogenic nematode species (Rhabditida: Steienermatidae) by RFLP analysis of the ITS region of the ribosomal DNA repeat unit
    • REID, A. P., W. M. HOMINICK, AND B. R. BRISCOE. 1997. Molecular taxonomy and phylogeny of entomopathogenic nematode species (Rhabditida: Steienermatidae) by RFLP analysis of the ITS region of the ribosomal DNA repeat unit. Systematic Parasitology 37: 187-193.
    • (1997) Systematic Parasitology , vol.37 , pp. 187-193
    • Reid, A.P.1    Hominick, W.M.2    Briscoe, B.R.3
  • 34
    • 0036183432 scopus 로고    scopus 로고
    • The use of host specificity, pathogenicity, and molecular markers to differentiate between Gyrodactylus salaris Malmberg, 1957 and G. thymalli Zitnan, 1960 (Monogenea: Gyrodactylidae)
    • STERUD, E., T. A. MO, C. M. COLLINS, AND C. O. CUNNINGHAM. 2002. The use of host specificity, pathogenicity, and molecular markers to differentiate between Gyrodactylus salaris Malmberg, 1957 and G. thymalli Zitnan, 1960 (Monogenea: Gyrodactylidae). Parasitology 124: 203-214.
    • (2002) Parasitology , vol.124 , pp. 203-214
    • Sterud, E.1    Mo, T.A.2    Collins, C.M.3    Cunningham, C.O.4
  • 35
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • THOMPSON, J. D., D. G. HIGGINS, AND T. J. GIBSON. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
    • (1994) Nucleic Acids Research , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 38
    • 0035945246 scopus 로고    scopus 로고
    • Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA
    • -, Y. VAN DE PEER, AND R. DE WACHTER. 2001. Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA. Nucleic Acids Research 29: 5017-5028.
    • (2001) Nucleic Acids Research , vol.29 , pp. 5017-5028
    • Van De Peer, Y.1    De Wachter, R.2
  • 39
    • 0002287019 scopus 로고    scopus 로고
    • Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide
    • J. Barciszewski and B. F. C. Clark (eds.). Kluwer Academic Publishers, Dordrecht, Netherlands
    • ZUKER, M., D. H. MATHEWS, AND D. H. TURNER. 1999. Algorithms and thermodynamics for RNA secondary structure prediction: A practical guide. In RNA biochemistry and biotechnology, J. Barciszewski and B. F. C. Clark (eds.). Kluwer Academic Publishers, Dordrecht, Netherlands, p. 11-43.
    • (1999) RNA Biochemistry and Biotechnology , pp. 11-43
    • Zuker, M.1    Mathews, D.H.2    Turner, D.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.