IR study on the relaxation of the phosphate group of 5′-dCMP in 2H2O and H2O solutions

Journal of Physical Chemistry B

Volumn 108, Issue 7, 2004, Pages 2438-2444

  Hernanz, Antonio ^a   Bratu, Ioan ^b   Navarro, Raquel ^a  

^a UNIVERSIDAD NACIONAL DE EDUCACIÓN A DISTANCIA   (Spain)

^b NIRDIMT   (Romania)

Author keywords

[No Author keywords available]

Indexed keywords

CHEMICAL RELAXATION; INFRARED SPECTROSCOPY; MATHEMATICAL MODELS; MOLECULAR VIBRATIONS; SOLUTIONS; TEMPERATURE; WATER;

DISODIUM DEOXYCYTIDINE MONOPHOSPHATE; MONONUCLEOTIDE; SELF ASSOCIATION;

PHOSPHATES;

EID: 1442288292     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp030853o     Document Type: Article

References (117)

1. Owrutsky, J. C.; Raftery, D.; Hochstrasser, R. M. Annu. Rev. Phys. Chem. 1994, 45, 519.
2. Asthana, B. P.; Kiefer, W. Vibrational Spectra and Structure. A Series of Advances; Durig, J. R., Ed.; Elsevier: Amsterdam, The Netherlands, 1993; Vol. 20, Chapter 2, pp 67-155.
3. Yarwood, J. Molecular Liquids: New Perspectives in Physics and Chemistry; Teixeira-Dias, J. J. C., Ed.; Kluwer Academic Publishers: Dordrecht, The Netherlands, 1992; pp 275-306.
4. Döge, G.; Yarwood, J. Spectroscopy and Relaxation of Molecular Liquids; Steele, D., Yarwood, J., Eds.; Elsevier, Amsterdam, The Netherlands, 1991; Chapter 6, pp 274-362.
5. Steele, D. Studies in Physical and Theoretical Chemistry. Spectroscopy and Relaxation of Molecular Liquids; Steele, D., Yarwood, J., Eds.; Elsevier: Amsterdam, 1991; Vol. 74, Chapter 2, pp 18-61.
6. Vincent-Geisse, J. Vibrational Spectroscopy of Molecular Liquids and Solids. NATO Advanced Study Institutes Series; Bratos, S.; Pick, R. M., Eds.; Plenum Press: New York, 1980; Vol. 56, pp 117-145.
7. Lakhlifi, A.; Girardet, C. J. Chem. Phys. 1996, 105, 2471.
8. Bonn, M.; Brugmans, M. J. P.; Kleyn, A. W.; van Santen, R. A.; Bakker, H. J. Phys. Rev. Lett. 1996, 76, 2440.
9. Zoidis, E.; Yarwood, J.; Danten, Y.; Besnard, M. Mol. Phys. 1995, 85, 385.
10. Bethardy, G. A.; Wang, X.; Perry, D. S. Can. J. Chem. 1994, 72, 652.
11. Tokmakoff, A.; Fayer, M. D.; Dlott, D. D. J. Phys. Chem. 1993, 97, 1901
12. Tokmakoff, A.; Fayer, M. D. Acc. Chem. Res. 1995, 28, 437.
13. Lee, Y. T.; Wallen, S. L.; Jonas, J. J. Phys. Chem. 1992, 96, 4282.
14. Marcus, R. A. J. Phys. Chem. 1986, 90, 3460.
15. Vöhringer, P.; Westervelt, R. A.; Yang, T.-S.; Arnett, D. C.; Feldstein, M. J.; Scherer, N. F. J. Raman Spectrosc. 1995, 26, 535.
16. Raftery, D.; Gooding, E. A.; Hochstrasser, R. M. Ultrafast Phenomena IX; Knox, W. H., Ed.; Springer: Berlin, 1994; pp 18-25.
17. Hamaguchi, H.; Iwata, K. Chem. Phys. Lett. 1993, 208, 465.
18. Kenkre, V. M.; Grigolini, P.; Dunlap, D. Davidov's Soliton Revisited. NATO ASI Series, Series B: Physics; Christiansen, P., Scott, A. C., Eds.; Plenum: New York, 1990; Vol. 243, pp 457-464.
19. Merchant, K. A.; Xu, Q.-H.; Thompson, D. E.; Fayer, M. D. J. Phys. Chem. A 2002, 106, 8839.
20. Williams, R. B.; Loring, R. F.; Fayer, M. D. J. Phys. Chem. B 2001, 105, 4068.
21. Kjaer, A. M.; Kjaer, N. J.; Ulstrup, J.; Zakaraya, M. G. Chem. Phys. Lett. 1989, 157, 447.
22. Marcus, R. A.; Sutin, N. Biochim. Biophys. Acta 1985, 811, 265.
23. Nielsen, O. F.; Jacobsen, K. L.; Westh, P.; Radovic, T.; Larsen, B. D.; Christensen, D. H. J. Mol. Struct. 2001, 598, 9.
24. Terpstra, P. A.; Otto, C.; Greve, J. Biopolymers 1997, 41, 751.
25. Terpstra, P. A.; Otto, C.; Greeve, J. Biophys. Chem. 1993, 48, 113.
26. Desoye, G.; Porschke, D. Biophys. Chem. 1993, 46, 283.
27. Forester, T. R. Mol. Phys. 1991, 73, 1335.
28. Li, J.; Lee, S. A.; Anderson, A.; Lettress, L.; Griffey, R. H.; Mohan, V. J. Raman Spectrosc. 2003, 34, 183.
29. Elofsson, A.; Nilsson, L. J. Phys. Chem. 1996, 100, 2480.
30. Wang, L.; Yang, L.; Keiderling, T. A. Biophys. J. 1994, 67, 2460.
31. Guan, Y.; Choy, G. S. C.; Glaser, R.; Thomas, Jr. G. J. J. Phys. Chem. 1995, 99, 12054.
32. Guan, Y.; Thomas, G. J., Jr. J. Mol. Struct. 1996, 379, 31.
33. Navarro, R.; Hernanz, A. J. Mol. Struct. 1988, 175, 335.
34. Hernanz, A.; Navarro, R. Spectroscopy of Biological Molecules-State of the Art; Bertoluzza, A., Fagnano, C., Monti, P., Eds.; Società Editrice Esculapio: Bologna, 1989; pp 203-204.
35. Navarro, R.; Hernanz, A. Chemistry and Properties of Biomolecular Systems. Topics in Molecular Organization and Engineering; Lipscomb, W. N., Ed.; Kluwer: Dordrecht, The Netherlands, 1991; Vol. 8, pp 165-169.
36. Navarro, R.; Bratu, I.; Hernanz, A. J. Phys. Chem. 1993, 97, 9081.
37. Hernanz, A.; Bratu, I.; Navarro, R.; Huvenne, J. P.; Legrand, P. J. Chem. Soc., Faraday Trans. 1996, 72, 1111.
38. Hernández, B.; Hernanz, A.; Navarro, R. J. Mol. Struct. 1999, 480-481, 443.
39. Hernández, B.; Gavira-Vallejo, J. M.; Navarro, R.; Hernanz, A. J. Mol. Struct. 2001, 565-566, 259.
40. Rothschild, W. G. Molecular Motions in Liquids; Lascombe, J., Ed.; Reidel: Dordrecht, The Netherlands, 1974; p 247
41. Nafie, L. A.; Peticolas, W. L. J. Chem. Phys. 1972, 57, 3145.
42. Hayashi, T.; Hamaguchi, H. Chem. Phys. Lett. 2000, 326, 115.
43. Rey, R.; Hynes, J. T. J. Chem. Phys. 1998, 108, 142.
44. Hamm, P.; Lim, M.; Hochstrasser, R. M. Springer Series in Chemical Physics, 63 (Ultrafast Phenomena XI); Springer: Berlin, 1998; pp 514-516.
45. Kropman, M. F.; Bakker, H. J. Chem. Phys. Lett. 2003, 370, 741.
46. Fisk, C. L.; Becker, E. D.; Miles, H. T.; Pinnavaia, T. J. J. Am. Chem. Soc. 1982, 104, 3307.
47. Walmsley, J. A.; Barr, R. G.; Bouhoutsos-Brown, E.; Pinnavaia, T. J. J. Phys. Chem. 1984, 88, 2599.
48. Carsughi, F.; Ceretti, M.; Mariani, P. Eur. Biophys. J. 1992, 21, 155.
49. Bratos, S.; Rios, J.; Guissani, Y. J. Chem. Phys. 1970, 52, 439.
50. Van Woerkom, P. C. M.; DeBleyser, J.; DeZwart, M.; Leyte, J. C. Chem. Phys. 1974, 4, 236.
51. Rothschild, W. G. J. Chem. Phys. 1976, 65, 455.
52. Oxtoby, D. W. Adv. Chem. Phys. 1979, 40, 1.
53. Perelygin, I. S.; Mikhailov, G. P.; Tuchkov, S. V. J. Mol. Struct. 1996, 381, 189.
54. Perelygin, I. S.; Mikhailov, G. P.; Tuchkov, S. V. Khim. Fiz. 1998, 17, 25.
55. Stenger, J.; Madsen, D.; Hamm, P.; Nibbering, E. T. J.; Elsaesser, T. Phys. Rev. Lett. 2001, 87, 027401-1.
56. Anderson, P. W. J. Phys. Soc. Jpn. 1954, 9, 366.
57. Kubo, R. Fluctuation, relaxation, and resonance in magnetic systems; ter Haar, D., Ed.; Oliver and Boyd: Edinburgh, 1962; p 23.
58. Constant, M.; Fauquembergue, R. J. Chem. Phys. 1973, 58, 4030.
59. Oxtoby, D. W. J. Chem. Phys. 1981, 74, 1503.
60. Rothschild, W. G.; Perrot, M.; Guillaume, F. Chem. Phys. Lett. 1986, 128, 591.
61. Rothschild, W. G.; Perrot, M.; Guillaume, F. J. Chem. Phys. 1987, 87, 7293.
62. Pandit, J.; Seshadri, T. P.; Viswamitra, M. A. Acta Crystallogr. 1983, C39, 342.
63. Viswamitra, M. A.; Reddy, B. S.; Lin, G. H.-Y.; Sundaralingam, M. J. Am. Chem. Soc. 1971, 93, 4565.
64. Dobson, M.; Geraldes, F. G. C.; Ratcliffe, G.; Williams, J. P. Eur. J. Biochem. 1978, 88, 259.
65. Davies, D. B.; Danyluk, S. S. Biochemistry 1974, 13, 4417.
66. Blonski, W. J. P.; Hruska, F. E.; Sadana, K. L.; Loewen, P. C. Biopolymers 1983, 22, 605.
67. GRAMS/AI, v. 7.00, Thermo Galactic, Salem, USA, 2002.
68. Dijkman, F. G.; Van der Maas, J. H. Appl. Spectrosc. 1976, 30, 545.
69. Rothschild, W. G.; Cavagnat, R. M.; Perrot, M. Chem. Phys. 1987, 118, 33.
70. Kirillov, S. A. Chem. Phys. Lett. 1992, 200, 205.
71. Turrell, G.; Leclerc, D.; Aubin, M.; Mushayakarara, E. J. Mol. Liq. 1983, 27, 37.
72. Keller, B.; Kneubühl, F. Helv. Phys. Acta 1972, 45, 1127.
73. Fujiyama, T.; Crawford, B., Jr. J. Phys. Chem. 1968, 72, 2174.
74. Tanabe, K. Spectrochim. Acta 1974, 30A, 1891.
75. Hawranek, J. P.; Czarnecki, M. A. Chem. Phys. Lett. 1988, 151, 340.
76. Ikawa, S.; Takahashi, S.; Kimura, M. Conference on Molecular Structure, Kyoto, 1971.
77. Mills, I.; Cvitas, T.; Homann, K.; Kallay, N.; Kuchitsu, K. Quantities, Units and Symbols in Physical Chemistry; IUPAC, Ed.; Blackwell: Oxford, 1988; p 91.
78. Bryans, T. R.; Wilde, R. E.; Holtz, M. W.; Quitevis, E. L. Chem. Phys. Lett. 1999, 314, 459.
79. Wilde, R. E.; Yarwood, J. J. Raman Spectrosc. 1988, 19, 289.
80. Feng, Q.; Wilde, R. E. Chem. Phys. Lett. 1988, 150, 424.
81. Bulkin, B. J. Chemical, Industrial and Biological Applications of Infrared Spectroscopy; During, J. R., Ed.; John Wiley: New York, 1985; pp 139-172.
82. Maleknia, S.; Ho, S.; Schwartz, M. J. Chem. Phys. 1982, 77, 1197.
83. Schroeder, J.; Schiemann, V. H.; Jonas, J. Mol. Phys. 1977, 34, 1501.
84. Tanabe, K.; Jonas, J. J. Chem. Phys. 1977, 67, 4222.
85. Jones, R. N.; Seshadri, K. S.; Jonathan, B. W.; Hopkins, J. W. Can. J. Chem. 1963, 41, 750.
86. Oxtoby, D. W. Annu. Rev. Phys. Chem. 1981, 32, 77.
87. Rosi, B.; Fontana, M. R. J. Chem. Phys. 1987, 87, 6406.
88. Bratu, I.; Klostermann, K.; Iliescu, T.; Astilean, S. J. Mol. Liq. 1990, 45, 57.
89. Higuchi, S.; Tanaka, S. Spectrochim. Acta 1975, 31A, 1003.
90. Tanabe, K.; Hiraishi, J. Chem. Phys. Lett. 1980, 71, 460.
91. Li, M.; Owrutsky, J.; Sarisky, M.; Culver, J. P.; Yodh, A.; Hochstrasser, R. M. J. Chem. Phys. 1993, 98, 5499.
92. Shiga, M.; Okazaki, S. J. Chem. Phys. 1999, 111, 5390.
93. Rakov, A. V. Research in Molecular Spectroscopy; Skobeltzyn, D. V., Ed.; Consultant Bureau: 1965; Vol. 27, p 109
94. Graener, H.; Seifert, G. J. Chem. Phys. 1993, 98, 36.
95. Deng, Y.; Stratt, R. M. J. Chem. Phys. 2002, 117, 1735.
96. Kenkre, V. M.; Tokmakoff, A.; Fayer, M. D. J. Chem. Phys. 1994, 101, 10618.
97. Roy, S.; Bagchi, B. J. Chem. Phys. 1993, 99, 9938.
98. Whitnell, R. M.; Wilson, K. R.; Hynes, J. T. J. Chem. Phys. 1992, 96, 5454.
99. Whitnell, R. M.; Wilson, K. R.; Hynes, J. T. J. Phys. Chem. 1990, 94, 8625.
100. Valiev, K. A. Zh. Eksp. Teor. Fiz. 1961, 40, 1832.
101. Rothschild, W. G.; Perrot, M.; Lascombe, J. Chem. Phys. Lett. 1981, 78, 197.
102. Kato, T.; Takenaka, T. Mol. Phys. 1982, 46, 257.
103. Guillaume, F.; Perrot, M.; Rothschild, W. G. J. Chem. Phys. 1985, 83, 4338.
104. Kato, T. Mol. Phys. 1981, 43, 161.
105. Oxtoby, D. W. J. Chem. Phys. 1979, 70, 2610.
106. Laubereau, A.; Kaiser, W. Rev. Phys. Chem. 1975, 26, 83.
107. Rothschild, W. G.; Perrot, M. J. Chem. Phys. 1988, 89, 6454.
108. Kirillov, S. A.; Voyiatzis, G. A.; Musiyenko, I. S. J. Raman Spectrosc. 1998, 29 413.
109. Burshtein, A. I.; Fedorenko, S. G.; Pusep, Yu. A. Chem. Phys. Lett. 1983, 100, 155.
110. Fedorenko, S. G.; Pusep, Yu. A.; Burshtein, A. I. Spectrochim. Acta A 1987, 43, 483.
111. Kirillov, S. A.; Kolomietz, T. M. Spectrochim. Acta A 1992, 48A, 867.
112. Kirillov, S. A. Chem. Phys. Lett. 1993, 202, 459.
113. Hernanz, A.; Navarro, R. Chemistry and Properties of Biomolecular Systems. Topics in Molecular Organization and Engineering; Rizzarelli, E., Theophanides, T., Eds.; Kluwer Academic Publishers: Dordrecht, The Netherlands, 1991; Vol. 8, pp 159-164.
114. Rothschild, W. G. J. Mol. Struct. 1990, 217, 181.
115. Kirillov, S. A.; Voyiatzis, G. A.; Musiyenko, I. S.; Photiadis, G. M.; Pavlatou, E. A. J. Chem. Phys. 2001, 114, 3683.
116. Kirillov, S. A. J. Mol. Struct. 1995, 349, 21.
117. Atakhodzhaev, A. K.; Pogorelov, V. E.; Saidov, D.; Khodzhieva, E. Khim. Fiz. 1996, 15, 111.