A multi-gene phylogeny of aquiline eagles (Aves: Accipitriformes) reveals extensive paraphyly at the genus level

Molecular Phylogenetics and Evolution

Volumn 35, Issue 1, 2005, Pages 147-164

  Helbig, Andreas J ^a   Kocum, Annett ^a   Seibold, Ingrid ^a   Braun, Michael J ^b  

^a UNIVERSITY OF GREIFSWALD   (Germany)

^b SMITHSONIAN INSTITUTION   (United States)

Author keywords

Accipitriformes; Biogeography; Cytochrome b; Diurnal birds of prey; Nuclear introns; Plumage evolution; RAG 1; Systematics

Indexed keywords

AQUILA; AQUILA CLANGA; AQUILA POMARINA; AQUILA VERREAUXII; AVES; CICONIIFORMES; FALCONIFORMES; HIERAAETUS; HIERAAETUS AYRESII; HIERAAETUS FASCIATUS; HIERAAETUS MORPHNOIDES; HIERAAETUS PENNATUS; HIERAAETUS SPILOGASTER; HIERAAETUS WAHLBERGI; LOPHAETUS; LOPHAETUS OCCIPITALIS; NISAETUS; OROAETUS ISIDORI; POLEMAETUS BELLICOSUS; SPIZAETUS; SPIZASTUR MELANOLEUCUS; STEPHANOAETUS;

EID: 14144255694     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ympev.2004.10.003     Document Type: Article

References (66)

1. D. Amadon The genera of Booted Eagles: Aquila and relatives J. Yamashima Inst. Ornithol. 14 1982 108 121
2. D. Amadon, and J. Bull Hawks and owls of the world. An annotated list of species West. Found. Vert. Zool. 3 1988 297 347
3. E. Bapteste, and H. Philippe The potential value of indels as phylogenetic markers: position of Trichomonads as a case study Mol. Biol. Evol. 19 2002 972 977
4. F.K. Barker, G.F. Barrowclough, and J.G. Groth A phylogenetic hypothesis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data Proc. R. Soc. London B 269 2001 295 308
5. S.M. Birks, and S.V. Edwards A phylogeny of the megapodes (Aves: Megapodiidae) based on nuclear and mt DNA sequences Mol. Phylogenet. Evol. 23 2002 408 421
6. P. Brodkorb Catalogue of fossil birds. Part 2 (Anseriformes through Galliformes) Bull. Florida State Mus. 8 1964 195 335
7. R.H. Brooke, J.H. Grobler, M.P.S. Irwin, and P. Steyn A study of the migratory eagles Aquila nipalensis and A. pomarina (Aves: Accipitridae) in southern Africa, with comparative notes on other large raptors Occas. Papers Nat. Mus. Rhodesia B5 1972 61 114
8. R.H. Brooke, and C.J. Vernon Early names and records of two small Hieraaetus eagles (Aves: Accipitridae) in the Cape Province of South Africa Ann. Cape Prov. Museum (Nat. Hist.) 13 1981 133 137
9. L.H. Brown, and D. Amadon Classification and distribution Eagles, Hawks and Falcons of the World vol. 1 1968 Country Life Books Feltham 17 25
10. L.H. Brown, E.K. Urban, and K. Newman The Birds of Africa vol. 1 1982 Academic Press London
11. J.J. Bull, J.P. Huelsenbeck, C.W. Cunningham, D.L. Swofford, and P.J. Waddell Partitioning and combining data in phylogenetic analysis Syst. Biol. 42 1993 384 397
12. M. Bunce, T.H. Worthy, T. Ford, W. Hoppitt, E. Willerslev, A. Drummond, and A. Cooper Extreme reversed sexual size dimorphism in the extinct New Zealand moa Dinornis Nature 425 2003 172 175
13. L.M. Carlson, M.A. Oettinger, D.G. Schatz, E.L. Masteller, E.A. Hurley, W.T. McCormack, D. Baltimore, and C.B. Thompson Selective expression of RAG-2 in chicken B cells undergoing immunoglobulin gene conversion Cell 64 1991 201 208
14. W.S. Clark The taxonomy of Steppe and Tawny Eagles, with criteria for separation of museum specimens and live eagles Bull Brit. Orn. Club 12 1992 156 157
15. A.W.F. Edwards Likelihood: Expanded Edition 1992 Johns Hopkins University Press Baltimore
16. P.G.P. Ericson, U.S. Johansson, and T.J. Parsons Major divisions in Oscines revealed by insertions in the nuclear gene c-myc: a novel gene in avian phylogenetics Auk 117 2000 1069 1078
17. P.G.P. Ericson, I. Envall, M. Irestedt, and J.A. Norman Inter-familial relationships of the shorebirds (Aves: Charadriiformes) based on nuclear DNA sequence data BMC Evol. Biol. 3 2003 16
18. J.S. Farris, M. Kallersjo, A.G. Kluge, and C. Bult Testing significance of incongruence Cladistics 10 1995 315 319
19. J. Ferguson-Lees, and D.A. Christie Raptors of the World 2001 C. Helm London
20. V.L. Friesen, B.C. Congdon, M.G. Kidd, and T.P. Birt Polymerase chain reaction (PCR) primers for the amplification of five nuclear introns in vertebrates Mol. Ecol. 8 1999 2141 2152
21. J.G. Groth, and G.F. Barrowclough Basal divergences in birds and the phylogenetic utility of the nuclear RAG-1 gene Mol. Phylogenet. Evol. 12 1999 115 123
22. M. Hasegawa, H. Kishino, and K. Yano Dating of the human-ape splitting by a molecular clock of mitochondrial DNA J. Mol. Evol. 22 1985 160 174
23. Helbig, A.J., Kocum, A., Seibold, I., Huddleston, C., Braun, M., (in prep.). Evolutionary history of diurnal birds of prey (Aves: Accipitriformes)
24. R.N. Holdaway An exploratory phylogenetic analysis of the genera of the Accipitridae, with notes on the biogeography of the family B.-U. Meyburg R.D. Chancellor Raptor Conservation Today 1994 Pica Press London 601 649
25. J.P. Huelsenbeck, and F. Ronquist MrBayes: Bayesian inference of phylogenetic trees Bioinform. Appl. Notes 17 2001 754 755
26. L. Huynen, C.D. Millar, R.P. Scofield, and D.M. Lambert Nuclear DNA sequences detect species limits in ancient moa Nature 425 2003 175 178
27. M. Irestedt, J. Fjeldså, U.S. Johansson, and P.G.P. Ericson Systematic relationships and biogeography of the tracheophone suboscines (Aves: Passeriformes) Mol. Phylogenet. Evol. 23 2002 499 512
28. K.P. Johnson, and D.H. Clayton Nuclear and mitochondrial genes contain similar phylogenetic signal for pigeons and doves (Aves: Columbiformes) Mol. Phylogenet. Evol. 14 2000 141 151
29. Jollie, M., 1976-1977. A contribution to the morphology and physiology of the Falconiformes. Evol. Theory 1, 285-298; 2, 115-300; 3, 1-141
30. Jollie, M., 1976-1977. A contribution to the morphology and physiology of the Falconiformes. Evol. Theory 1, 285-298; 2, 115-300; 3, 1-141
31. Jollie, M., 1976-1977. A contribution to the morphology and physiology of the Falconiformes. Evol. Theory 1, 285-298; 2, 115-300; 3, 1-141
32. A. Kawakita, T. Sota, J.S. Ascher, M. Ito, H. Tanaka, and M. Kato Evolution and phylogenetic utility of alignment gaps within intron sequences of three nuclear genes in bumble bees (Bombus) Mol. Biol. Evol. 20 2003 87 92
33. S. Kumar, K. Tamura, I.B. Jakobsen, and M. Nei MEGA 2.0: Molecular Evolutionary Genetics Analysis Software 2001 Arizona State University Tempe, Arizona, USA
34. D.G. Lloyd, and V.L. Calder Multi-residue gaps, a class of molecular characters with exceptional reliability for phylogenetic analyses J. Evol. Biol. 4 1991 9 21
35. S.A. Miller, D.O. Dykes, and H.F. Polesky A simple salting out procedure for extracting DNA from human nucleated cells Nucleic Acids Res. 16 1988 1215
36. M. Nishizawa, and K. Nishizawa A DNA sequence evolution analysis generalized by simulation and the Markov Chain Monte Carlo method implicates strand slippage in a majority of insertions and deletions J. Mol. Evol. 55 2002 706 717
37. S.L. Olson The fossil record of birds D.S. Farner J.R. King K.C. Parkes Avian Biology vol. 8 1985 Academic Press New York 79 252
38. S.J. Parry, W.S. Clark, and V. Prakash On the taxonomic status of the Indian Spotted Eagle Aquila hastata Ibis 144 2002 665 675
39. T. Paton, O. Haddrath, and A.J. Baker Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds Proc. R. Soc. London B 269 2002 839 846
40. M.J. Phillips, and D. Penny The root of the mammalian tree inferred from whole mitochondrial genomes Mol. Phylogenet. Evol. 28 2003 171 185
41. D. Posada, and K.A. Crandall Modeltest: testing the model of DNA substitution Bioinformatics 14 1998 817 818
42. T.M. Prychitko, and W.S. Moore Comparative evolution of the mitochondrial cytochrome b gene and nuclear β-fibrinogen intron 7 in woodpeckers Mol. Biol. Evol. 17 2000 1101 1111
43. T.M. Prychitko, and W.S. Moore Alignment and phylogenetic analysis of β-fibrinogen intron 7 sequences among avian orders reveal conserved regions within the intron Mol. Biol. Evol. 20 2003 762 771
44. Schmidt, H.A., Strimmer, K., Vingron, M., von Haeseler, A., 2004. TREE-PUZZLE 5.2. Available from: 〈http://www.tree-puzzle.de〉
45. I. Seibold, and A.J. Helbig Zur systematischen Stellung des Fischadlers Pandion haliaetus nach mitochondriellen DNA-Sequenzen Vogelwelt 116 1995 209 217
46. I. Seibold, and A.J. Helbig Evolutionary history of New and Old World vultures inferred from nucleotide sequences of the mitochondrial cytochrome b gene Philos. Trans. R. Soc. London B 350 1995 163 178
47. I. Seibold, and A.J. Helbig Phylogenetic relationships of the Sea-Eagles (genus Haliaeetus): reconstructions based on morphology, allozymes and mitochondrial DNA sequences J. Zool. Syst. Evol. Res. 34 1996 103 112
48. I. Seibold, A.J. Helbig, B.-U. Meyburg, J.J. Negro, and M. Wink Genetic differentiation and molecular phylogeny of European Aquila eagles according to cytochrome b nucleotide sequences B.-U. Meyburg R.D. Chancellor Eagle Studies 1996 World Working Group Birds of Prey Berlin, London 1 15
49. L.H. Shapiro, and J.P. Dumbacher Adenylate kinase intron 5: a new nuclear locus for avian systematics Auk 118 2001 248 255
50. C.G. Sibley, and J.E. Ahlquist Phylogeny and Classification of Birds. A Study in Molecular Evolution 1990 Yale University Press New Haven
51. C.G. Sibley, and B.L. Monroe Distribution and Taxonomy of Birds of the World 1990 Yale University Press New Haven
52. M.P. Simmons, and H. Ochoterena Gaps as characters in sequence-based phylogenetic analyses Syst. Biol. 49 2000 369 381
53. M.P. Simmons, H. Ochoterena, and T.C. Carr Incorporation, relative homoplasy, and effect of gap characters in sequence-based phylogenetic analyses Syst. Biol. 50 2001 454 462
54. Stock, C., 1992. Rancho La Brea-a record of Pleistocene Life in California. Nat. Hist. Museum Los Angeles Co., Sci. Ser. 37. 7th ed., revised by J.M. Harris
55. E. Stresemann, and D. Amadon Order Falconiformes second ed. E. Mayr G.W. Cottrell Check-List of the Birds of the World vol. I 1979 Museum Comparative Zoology Cambridge, MA 271 425
56. Y. Suminami, F. Kishi, T. Torigoe, and A. Nakazawa Structure and complete nucleotide sequence of the gene encoding chicken cytosolic adenylate kinase J. Biochem. 103 1988 611 617
57. Swofford, D.L. 2003. PAUP*. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4.0b10. Sinauer Associates, Sunderland, MA. Available from: 〈http://paup.csit.fsu.edu/index.html〉
58. D.L. Swofford, G.J. Olsen, P.J. Waddell, and D.M. Hillis Phylogenetic inference D.M. Hillis C. Moritz B.K. Mable Molecular Systematics 1996 Sinauer Associates Sunderland, MA 407 514
59. M. van Tuinen, and S.B. Hedges Calibration of avian molecular clocks Mol. Biol. Evol. 18 2001 206 213
60. C. Vaurie The Birds of the Palearctic Fauna. Non-Passeriformes 1965 Witherby Ltd London
61. B. Venkatesh, M.V. Erdamnn, and S. Brenner Molecular synapomorphies resolve evolutionary relationships of extant jawed vertebrates Proc. Natl. Acad. Sci. USA 98 2001 11381 11387
62. L. Vogt Weighting indels as phylogenetic markers of 18S rDNA sequences in Diptera and Strepsiptera Org. Divers. Evol. 2 2002 335 349
63. A.C. Weibel, and W.S. Moore A test of a mitochondrial gene-based phylogeny of woodpeckers (genus Picoides) using an independent nuclear gene, β-fibrinogen intron 7 Mol. Phylogenet. Evol. 22 2002 247 257
64. M. Wink, and H. Sauer-Gürth Advances in the molecular systematics of African raptors R.D. Chancellor B.U. Meyburg Raptors at Risk 2000 Hancock House Publ. 135 147
65. H.E. Wolters Die Vogelarten der Erde vol. 2 1976 P. Parey Hamburg
66. R. Yosef, G. Verdoorn, A.J. Helbig, and I. Seibold A new subspecies of the Booted Eagle from Southern Africa, inferred from biometrics and mitochondrial DNA R.D. Chancellor B.-U. Meyburg Raptors at Risk 2000 Hancock House Publ. 43 49