Improved pruned-enriched-rosenbluth method for protein folding

Huazhong Keji Daxue Xuebao (Ziran Kexue Ban)/Journal of Huazhong University of Science and Technology (Natural Science Edition)

Volumn 32, Issue 7, 2004, Pages 1-3

  Huang, Wenqi ^a   Cheng, Nianhua ^a   Lu, Zhipeng ^a  

^a HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

IPERM; PERM; Protein folding; Prune; Threshold

Indexed keywords

HYDROPHOBICITY; LEARNING ALGORITHMS; NUMERICAL ANALYSIS; THREE DIMENSIONAL;

FULLY BLIND GENERAL PURPOSE STOCHASTIC ALGORITHMS; IPERM; MULTISELF OVERLAP ENSEMBLE (MSOE); PERM; PILOT EXPLORATION; PROTEIN FOLDING; PRUNE; SEQUENTIAL IMPORTANCE SAMPLING; THRESHOLD;

PROTEINS;

EID: 13944267837     PISSN: 16714512     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (6)

1. Shortle D, Chan H S, Dill K A. Modeling the effects of mutations on the denatured states of proteins. Protein Science, 1992, 1(2): 201-215
2. Chikenji G, Kikuchi M, Iba Y. Mutlti-self-overlap ensemble for protein folding: Ground state search and thermodynamics. Physical Review Letter, 1999, 83(9): 1886-1889
3. Junni L Z, Jun S L. A new sequential importance sampling method and its application to the two-dimensional hydrophobic-hydrophilic model. Journal of Chemical Physics, 2002, 117(7): 3492-3498
4. Grassberger P. Pruned-enriched rosenbluth method: Simulations of polymers of chain length up to 1000000. Physical Review E, 1997, 56(3): 3682-3693
5. Hsu H P, Mehra V, Nadler W, Grassberger P. Growth algorithms for lattice heteropolymers at low temperatures. Journal of Chemical Physics, 2003, 118(1): 444-451