Fibroin-modulator-binding protein-1 (FMBP-1) contains a novel DNA-binding domain, repeats of the score and three amino acid peptide (STP), conserved from Caenorhabditis elegans to humans

Nucleic Acids Research

Volumn 33, Issue 2, 2005, Pages 786-795

  Takiya, Shigeharu ^a   Ishikawa, Tetsurou ^a   Ohtsuka, Katsuya ^a   Nishita, Yoshinori ^a   Suzuki, Yoshiaki ^b,c  

^a HOKKAIDO UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

^c NONE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; BINDING PROTEIN; COMPLEMENTARY DNA; PEPTIDE; SILK FIBROIN; DNA BINDING PROTEIN; FIBROIN; INSECT PROTEIN;

AFFINITY CHROMATOGRAPHY; AMINO TERMINAL SEQUENCE; ANIMAL CELL; ARTICLE; CAENORHABDITIS ELEGANS; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; DNA BINDING; DNA ISOLATION; DNA LIBRARY; DROSOPHILA; GENE ACTIVITY; GENE CONTROL; GENE EXPRESSION; GENETIC TRANSCRIPTION; HUMAN; MOLECULAR CLONING; MOUSE; MUTATIONAL ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PURIFICATION; SEQUENCE HOMOLOGY; SILKWORM; TANDEM REPEAT; TRANSCRIPTION REGULATION; AMINO ACID SEQUENCE; ANIMAL; CHEMISTRY; DNA SEQUENCE; GENE; GENETICS; ISOLATION AND PURIFICATION; LARVA; METABOLISM; MOLECULAR GENETICS; PRENATAL DEVELOPMENT; PROTEIN TERTIARY STRUCTURE;

BOMBYX MORI; CAENORHABDITIS ELEGANS; EMBRYOPHYTA;

AMINO ACID SEQUENCE; ANIMALS; BOMBYX; CAENORHABDITIS ELEGANS; CHROMATOGRAPHY, AFFINITY; CONSERVED SEQUENCE; DNA, COMPLEMENTARY; DNA-BINDING PROTEINS; DROSOPHILA; FIBROINS; GENES, INSECT; HUMANS; INSECT PROTEINS; LARVA; MICE; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, TERTIARY; REPETITIVE SEQUENCES, AMINO ACID; SEQUENCE ANALYSIS, DNA;

EID: 13844312495     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gki228     Document Type: Article

References (44)

1. Suzuki,Y. (1977) Differentiation of the silk gland: a model system for the study of differential gene action. In Beermann,W. (ed.), Results and Problems in Cell Differentiation. Springer-Verlag, Berlin/Heidelberg, Vol. 8, pp. 1-44.
2. Suzuki,Y., Takiya,S., Suzuki,T., Hui,C.-C., Matsuno,K., Fukuta,M., Nagata,J. and Ueno,K. (1990) Developmental regulation of silk gene expression in Bombyx mori. In Hagedorn,H.H., Hildebrand,J.G., Kindwell,M.G. and Law,J.H. (eds), Molecular Insect Science. Plenum Press, NY, pp. 83-89.
3. Suzuki,Y. and Brown,D. (1972) Isolation and identification of the messenger RNA for silk fibroin from Bombyx mori. J. Mol. Biol., 63, 409-429.
4. Suzuki,Y. and Suzuki,E. (1974) Quantitative measurements of fibroin messenger RNA synthesis in the posterior silk gland of normal and mutant Bombyx mori. J. Mol. Biol., 88, 393-407.
5. Maekawa,H. and Suzuki,Y. (1980) Repeated turn-off and turn-on of fibroin gene transcription during silk gland development of Bombyx mori. Dev. Biol., 78, 394-406.
6. Ishikawa,E. and Suzuki,Y. (1985) Tissue and stage-specific expression of sericin genes in the middle silk gland of Bombyx mori. Dev. Growth Differ., 27, 73-82.
7. Couble,P., Moine,A., Garel,A. and Prudhomme,J.-C. (1983) Developmental variations of a nonfibrion mRNA of Bombyx mori silk gland, encoding for a low-molecular-weight silk protein. Dev. Biol. 97, 398-407.
8. Kimura,K., Oyama,F., Ueda,H., Mizuno,S. and Shimura,K. (1985) Molecular cloning of the fibroin light chain complementary DNA and its use in the study of the expression of the light chain gene in the posterior silk gland of Bombyx mori. Experientia, 41, 1167-1171.
9. Okamoto,H., Ishikawa,E. and Suzuki,Y. (1982) Structural analysis of sericin genes. Homologies with fibroin gene in the 5′ flanking nucleotide sequences. J. Biol. Chem., 257, 15192-15199.
10. Couble,P., Michaille,J.-J., Garel,A., Couble,M.-L. and Prudhomme,J.-J. (1987) Developmental switches of sericin mRNA splicing in individual cells of Bombyx mori silkgland. Dev. Biol., 124 431-440.
11. Obara,T. and Suzuki,Y. (1988) Temporal and spatial control of silk gene transcription analyzed by nuclear run-on assays. Dev. Biol. 127, 384-391.
12. Michaille,J.-J., Garel,A. and Couble,P. (1990) Cloning and characterization of the highly polymorphic Ser2 gene of Bombyx mori. Gene, 86, 177-184.
13. Matsunami,K., Kokubo,H., Ohno,K. and Suzuki,Y. (1998) Expression pattern analysis of SGF-3/POU-M1 in relation to sericin-1 gene expression in the silk gland. Dev. Growth Differ., 40, 591-597.
14. Suzuki,Y. and Giza,P.E. (1976) Accentuated expression of silk fibroin gene in vivo and in vitro. J. Mol. Biol., 107, 183-206.
15. Matsuno,K., Hui,C.-C., Takiya,S., Suzuki,T., Ueno,K. and Suzuki,Y. (1989) Transcriptional signals and protein binding sites for sericin gene transcription in vitro. J. Biol. Chem., 264, 18707-18713.
16. Hui,C.-C., Matsuno,K. and Suzuki,Y. (1990) Fibroin gene promoter contains a cluster of homeodomain binding sites that interact with three silk gland factors. J. Mol. Biol., 213, 651-670.
17. Suzuki,T., Matsuno,K., Takiya,S., Ohno,K., Ueno,K. and Suzuki,Y. (1991) Purification and characterization of an enhancer-binding protein of the fibroin gene: I. Complete purification of fibroin factor 1. J. Biol. Chem., 266, 16935-16941.
18. Suzuki,T., Takiya,S., Matsuno,K., Ohno,K., Ueno,K. and Suzuki,Y. (1991) Purification and characterization of an enhancer-binding protein of the fibroin gene: II. Functional analyses of fibroin factor 1. J. Biol. Chem., 266, 16942-16947.
19. Durand,B., Drevet,J. and Couble,P, (1992) P25 gene regulation in Bombyx mori silk gland: two promoter-binding factors have distinct tissue and developmental specificities. Mol. Cell. Biol., 12, 5768-5777.
20. Horard,B., Julien,E.,Nony,P.,Garel,A. and Couble,P. (1997) Differential binding of the Bombyx silk gland-specific factors SGFB to its target DNA sequence drives posterior-cell-restricted expression. Mol. Cell. Biol., 17, 1572-1579.
21. Takiya,S., Kokubo,H. and Suzuki,Y. (1997) Transcriptional regulatory elements in the upstream and intron of the fibroin gene bind three specific factors, POU-M1, Bm Fkh and FMBP-1. Biochem. J., 321, 645-653.
22. Fukuta,M., Matsuno,K., Hui,C.-C., Nagata,T., Takiya,S., Xu,P.-X., Ueno,K. and Suzuki,Y. (1993) Molecular cloning of a POU domain-containing factor involved in the regulation of the Bombyx sericin-1 gene. J. Biol. Chem., 268, 19471-19475.
23. Mach,V., Takiya,S., Ohno,K., Handa,H., Imai,T. and Suzuki,Y. (1995) Silk gland factor-1 involved in the regulation of Bombyx sericin-1 gene contains fork head motif. J. Biol. Chem., 270, 9340-9346.
24. Julien,E., Bordeaux,M.-C., Garel,A. and Couble,P. (2002) Fork head alternative binding drives stage-specific gene expression in the silk gland of Bombyx mori. Insect Biochem. Mol. Biol., 32, 377-387.
25. Kokubo,H., Takiya,S., Mach,V. and Suzuki,Y. (1996) Spatial and temporal expression pattern of Bombyx fork head/SGF-1 gene in embryogenesis. Dev. Genes Evol., 206, 80-85.
26. Matsuno,K., Takiya,S., Hui,C.-C., Suzuki,T., Fukuta,M., Ueno,K. and Suzuki,Y. (1990) Transcriptional stimulation via SC site of Bombyx sericin-1 gene through an interaction with a DNA binding protein SGF-3. Nucleic Acids Res., 18, 1853-1858.
27. Kiguchi,K. and Agui,N. (1981) Ecdysteroid levels and developmental events during larval moulting in the silkworm, Bombyx mori. J. Insect Physiol., 27, 805-812.
28. Suzuki,Y., Obara,J., Takiya,S., Hui,C.-C., Matsuno,K., Suzuki,T., Suzukui,E., Ohkubo,M. and Tamura,T. (1990) Differential transcription of the fibroin and sericin-1 genes in cell-free extracts. Dev. Growth Differ., 32, 179-187.
29. Tsuda,M. and Suzuki,Y. (1981) Faithful transcription initiation of fibroin gene in a homologous cell-free system reveals an enhancing effect of 5′ flanking sequence far upstream. Cell, 27, 175-182.
30. Takiya,S., Hui,C.-C. and Suzuki,Y. (1990) A contribution of the core-promoter and its surrounding regions to the preferential transcription of the fibroin gene in posterior silk gland extracts. EMBO J., 9, 489-496.
31. Takiya,S., Nishita,Y., Ishikawa,S., Ohno,K., Tamura,T. and Suzuki,Y. (2004) Bombyx Y-box protein BYB facilitates specific DNA interaction of various DNA binding proteins independently of the cold shock domain. J. Biochem., 135, 683-693.
32. Oritiz,M.L., Calero,M., Parton,C.F., Castellanos,L. and Mendez,E. (1992) Imidazole-SDS-Zn reverse staining of proteins in gels containing or not SDS and microsequence of individual unmodified electroblotted. proteins. FEBS Lett., 296, 300-304.
33. Inomata,Y., Kawaguchi,H., Hiramoto,M., Wada,T. and Handa,H. (1992) Direct purification of multiple ATF/ E4TF3 polypeptides from HeLa cell crude nuclear extracts using DNA affinity latex particles. Anal. Biochem., 206, 109-114.
34. Mounier,N. and Prudhomme,J.-C. (1986) Isolation of actin genes in Bombyx mori: the coding sequence of cytoplasmic actin gene expressed in the silk gland is interrupted by a single intron in an unusual position. Biochimie, 68, 1058-1061.
35. Jofuku,K.D., den Boer,B.G.W.,Montagu,M.V. and Okamuro,J.K. (1994) Control of Arabidopsis flower and seed development by the homeotic gene APETALA2. Plant Cell, 6, 1211-1225.
36. Ohme-Takagi,M. and Shinsi,H. (1995) Ethylene-inducible DNA binding proteins that interact with an ethylene-responsive element. Plant Cell, 7, 173-182.
37. Kagaya,Y., Ohmiya,K. and Hattori,T. (1999) RAV1, a novel DNA-binding protein, binds to bipartite recognition sequence through two distinct DNA-binding domains uniquely found in higher plants. Nucleic Acids Res., 27, 470-478.
38. Takiya,S., Gazi,M. and Mach,V. (2003) The DNA binding of insect Fork head factor is strongly influenced by the negative cooperation of neighbouring bases. Insect Biochem. Mol. Biol., 33, 1145-1154.
39. Manfredi,J.-J. and Prives,C. (1994) The transforming activity of simian virus 40 large tumor antigen. Biochem. Biophys. Acta, 1198, 65-83.
40. Hope,I.A. and Struhl,K. (1986) Functional dissection of a eukaryotic transcription factor protein, GCN4 of yeast. Cell, 46 885-894.
41. Sigler,P.B. (1988) Transcriptional activation. Acid blobs and negative noodles. Nature, 333, 210-212.
42. Gill,G. and Ptashne,M. (1987) Mutants of GAL4 protein altered in an activation function. Cell, 51, 121-126.
43. McCarty,D.R., Hattori,T., Carson,C.B., Vasil,V., Lazar,M. and Vasil,I.K. (1991) Viviparous-1 developmental gene of maize encodes a novel transcription activator. Cell, 6, 895-905.
44. Hill,A., Nantel,A., Rock,C.D. and Quatrano,R.S. (1996) A conserved domain of the viviparous-1 gene product enhances the DNA binding activity of the bZIP protein EmBP-1 and other transcription factors. J. Biol. Chem., 271, 3366-3374.