High resolution DNA fingerprinting by AFLP to study the genetic variation among Oesophagostomum bifurcum (Nematoda) from human and non-human primates from Ghana

Parasitology

Volumn 130, Issue 2, 2005, Pages 229-237

  De Gruijter, J M ^a   Gasser, R B ^b   Polderman, A M ^a   Asigri, V ^c   Dijkshoorn, L ^a  

^a LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

^b UNIVERSITY OF MELBOURNE   (Australia)

^c Parasitic Diseases Research Laboratory   (Ghana)

Author keywords

AFLP; Oesophagostomum bifurcum; Population genetic variation

Indexed keywords

TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; BABOON; CLUSTER ANALYSIS; DNA DETERMINATION; DNA FINGERPRINTING; DNA ISOLATION; GENE AMPLIFICATION; GENETIC VARIABILITY; GHANA; MONKEY; NEMATODE; NONHUMAN; PRIMATE; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; STRONGYLOIDEA; WORM;

ANIMALS; CLUSTER ANALYSIS; DNA FINGERPRINTING; DNA RESTRICTION ENZYMES; DNA, HELMINTH; GHANA; HAPLORHINI; HUMANS; OESOPHAGOSTOMIASIS; OESOPHAGOSTOMUM; PAPIO ANUBIS; POLYMERASE CHAIN REACTION; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; PRIMATE DISEASES; VARIATION (GENETICS);

CERCOPITHECUS MONA; DOMINGOA HAEMATOCHILA; ERYTHROCEBUS PATAS; NEMATODA; OESOPHAGOSTOMUM BIFURCUM; PAPIO ANUBIS; PAPIO HAMADRYAS; PRIMATES; STRONGYLIDA; STRONGYLOIDEA;

EID: 13844305832     PISSN: 00311820     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0031182004006249     Document Type: Article

References (37)

1. AGBO, E. E., MAJIWA, P. A., CLAASSEN, H. J. & TE PAS, M. F. (2002). Molecular variation of Trypanosoma brucei subspecies as revealed by AFLP fingerprinting. Parasitology 124, 349-358.
2. AJMONE-MARSAN, P., NEGRINI, R., MILANESI, E., BOZZI, R., NIJMAN, I. J., BUNTJER, J. B., VALENTINI, A. & LENSTRA, J. A. (2002). Genetic distances within and across cattle breeds as indicated by biallelic AFLP markers. Animal Genetics 33, 280-286.
3. BLOTKAMP, J., KREPEL, H. P., KUMAR, V., BAETA, S., VAN'T NOORDENDE, J. M. & POLDERMAN, A. M. (1993). Observations on the morphology of adults and larval stages of Oesophagostomum sp. isolated from man in northern Togo and Ghana. Journal of Helminthology 67, 49-61.
4. CHABAUD, A. G. & LARIVIÈRE, M. (1958). Sur les oesophagostomes parasites de l'homme. Bulletin de la Société de Pathologie Exotique 51, 384-393.
5. DE GRUIJTER, J. M., POLDERMAN, A. M., ZHU, X. Q. & GASSER, R. B. (2002). Screening for haplotypic variability within Oesophagostomum bifurcum (Nematoda) employing a single-strand conformation polymorphism approach. Molecular and Cellular Probes 16, 185-190.
6. DE GRUIJTER, J. M., ZIEM, J., VERWEIJ, J. J., POLDERMAN, A. M. & GASSER, R. B. (2004). Genetic substructuring within Oesophagostomum bifurcum (Nematoda) from human and non-human primates from Ghana based on random amplification of polymorphic DNA analysis. American Journal of Tropical Medicine and Hygiene 71, 227-233.
7. EBERHARD, M. L., KOVACS-NACE, E., BLOTKAMP, J., VERWEIJ, J. J., ASIGRI, V. A. & POLDERMAN, A. M. (2001). Experimental Oesophagostomum bifurcum in monkeys. Journal of Helminthology 75, 51-56.
8. GASSER, R. B., CHILTON, N. B., HOSTE, H. & BEVERIDGE, I. (1993). Rapid sequencing of rDNA from single worms and eggs of parasitic helminths. Nucleic Acids Research 21, 2525-2526.
9. GASSER, R. B., MONTI, J. R., BAO-ZHEN, Q., POLDERMAN, A. M., NANSEN, P. & CHILTON, N. B. (1998). A mutation scanning approach for the identification of hookworm species and analysis of population variation. Molecular and Biochemical Parasitology 92, 303-312.
10. GASSER, R. B., WOODS, W. G., BLOTKAMP, C., VERWEIJ, J., STOREY, P. A. & POLDERMAN, A. M. (1999). Screening for nucleotide variations in ribosomal DNA arrays of Oesophagostomum bifurcum by polymerase chain reaction-coupled single-strand conformation polymorphism. Electrophoresis 20, 1486-1491.
11. GIGASE, P., BAETA, S., KUMAR, V. & BRANDT, J. (1987). Frequency of symptomatic human oesophagostomiasis (helminthoma) in northern Togo. In Helminth Zoonosis (ed. Geerts, S., Kumar, V. & Brandt, J.), pp. 233-236. Martinus Nijhoff, Dordrecht, The Netherlands.
12. HÖGLUND, J., ENGSTRÖM, A., MORRISON, D. A. & MATTSSON, J. G. (2004). Genetic diversity assessed by amplified fragment length polymorphism analysis of the parasitic nematode Dictyocaulus viviparus the lungworm of cattle. International Journal for Parasitology 34, 475-484.
13. HU, M., CHILTON, N. B., ABSEL-OSTA, Y. G. & GASSER, R. B. (2003). Comparative analysis of mitochondrial genome data for Necator americanus from two endemic regions reveals substantial genetic variation. International Journal for Parasitology 33, 955-963.
14. HU, M., CHILTON, N. B., ZHU, X. & GASSER, R. B. (2002). Single-strand conformation polymorphism-based analysis of mitochondrial cytochrome c oxidase subunit 1 reveals significant substructuring in hookworm populations. Electrophoresis 23, 27-34.
15. JANSSEN, P. J. D. (2001). Selective Restriction Fragment Amplification by AFLP™. In New Approaches for the Generation and Analysis of Microbial Typing Data (ed. Dijkshoorn, L. & Towner, K. J.), pp. 177-210. Elsevier, Amsterdam.
16. JANSSEN, P. J. D., COOPMAN, R., HUYS, G., SWINGS, J., BLEEKER, M., VOS, P., ZABEAU, M. & KERSTERS, K. (1996). Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy. Microbiology 142, 1881-1893.
17. JANSSEN, P. J. D., MAQUELIN, K., COOPMAN, R., TJERNBERG, I., BOUVET, P., KERSTERS, K. & DIJKSHOORN, L. (1997). Discrimination of Acinetobacter genomic species by AFLP fingerprinting. International Journal of Systematic Bacteriology 47, 1179-1187.
18. MARSHALL, D. G. & DENEKA, S. I. (1966). Abdominal abcess due to helminthoma of the ascending colon. Canadian Journal of Veterinary Research 100, 913-914.
19. MUELLER, U. G., LIPARI, S. E. & MILGROOM, M. G. (1996). Amplified fragment length polymorphism (AFLP) fingerprinting of symbiotic fungi cultured by the fungus-growing ant Cyphomyrmex minutus. Molecular Ecology 5, 119-122.
20. OTSEN, M., HOEKSTRA, R., PLAS, M. E., BUNTJER, J. B., LENSTRA, J. A. & ROOS, M. H. (2001). Amplified fragment length polymorphism analysis of genetic diversity of Haemonchus contortus during selection for drug resistance. International Journal for Parasitology 31, 1138-1143.
21. PAGES, A., KPOZO, K., BAETA, S. M. & AKPO-ALLAVO, K. (1988). La "tumeur" de Dapaong, helminthiase a Oesophagostome. Annales d'Anatomie Pathologique 8, 332-335.
22. PEAKALL, R., EBERT, D., SCOTT, L. J., MEAGHER, P. F. & OFFORD, C. A. (2003). Comparative genetic study confirms exceptionally low genetic variation in the ancient and endangered relictual conifer, Wollemia nobilis (Araucariaceae). Molecular Ecology 12, 2331-2343.
23. PIT, D. S., RIJCKEN, F. E., RASPOORT, E. C., BAETA, S. M. & POLDERMAN, A. M. (1999). Geographic distribution and epidemiology of Oesophagostomum bifurcum and hookworm infections in humans in Togo. American Journal of Tropical Medicine and Hygiene 61, 951-955.
24. POLDERMAN, A. M., ANEMANA, S. D. & ASIGRI, V. (1999). Human oesophagostomiasis: a regional public health problem in Africa. Parasitology Today 15, 129-130.
25. POLDERMAN, A. M. & BLOTKAMP, C. (1995). Oesophagostomum infections in humans. Parasitology Today 11, 451-460.
26. POLDERMAN, A. M., KREPEL, H. P., BAETA, S., BLOTKAMP, J. & GIGASE, p. (1991). Oesophagostomiasis, a common infection of man in northern Togo and Ghana. American Journal of Tropical Medicine and Hygiene 44, 336-344.
27. ROMSTAD, A., GASSER, R. B., NANSEN, P., POLDERMAN, A. M. & CHILTON, N. B. (1998). Necator americanus (Nematoda: Ancylostomatidae) from Africa and Malaysia have different ITS-2 rDNA sequences. International Journal for Parasitology 28, 611-615.
28. SCHWARTZ, J., TATTERSALL, I. & ELDREDGE, N. (1978). Phylogeny and classification of the Primates revisited. Year Book of Physical Anthropology 21, 95-133.
29. SEMBLAT, J. P., BONGIOVANNI, M., WAJNBERG, E., DALMASSO, A., ABAD, P. & CASTAGNONE-SERENO, P. (2000). Virulence and molecular diversity of parthenogenetic root-knot nematodes, Meloidogyne spp. Heredity 84, 81-89.
30. SKRJABIN, K. I., SHIKHOBALOVA, N. P., SCHULZ, R. S., POPOVA, T. I., BOEV, S. N. & DELYAMURE, S. L. (1952). Strongylata. In Keys to Parasitic Nematodes Vol. 3 (ed. Skrjabin, K. I.), pp. 35-40. E.J. Brill, New York.
31. SOKAL, R. R. & ROHLF, F. J. (1962). The comparison of dendrograms by objective methods. Taxon XI, 33-40.
32. STEWART, T. B. & GASBARRE, L. C. (1989). The veterinary importance of nodular worms (Oesophagostomum spp.). Parasitology Today 5, 209-213.
33. STOREY, P. A., FAILE, G., HEWITT, E., YELIFARI, L., POLDERMAN, A. M. & MAGNUSSEN, P. (2000). Clinical epidemiology and classification of human oesophagostomiasis. Transactions of the Royal Society of Tropical Medicine and Hygiene 94, 177-182.
34. STRUELENS, M. J. (1996). Consensus guidelines for appropriate use and evaluation of microbial epidemiologic typing systems. Clinical Microbiology and Infection 2, 2-11.
35. VAN ELDERE, J., JANSSEN, P., HOEFNAGELS-SCHUERMANS, A., VAN LIERDE, S. & PEETERMANS, W. E. (1999). Amplified-fragment length polymorphism analysis versus macro-restriction fragment analysis for molecular typing of Streptococcus pneumoniae isolates. Journal of Clinical Microbiology 37, 2053-2057.
36. VERWEIJ, J. J., PIT, D. S., VAN LIESHOUT, L., BAETA, S. M., DERY, G. D., GASSER, R. B. & POLDERMAN, A. M. (2001). Determining the prevalence of Oesophagostomum bifurcum and Necator americanus infections using specific PCR amplification of DNA from faecal samples. Tropical Medicine and International Health 6, 726-731.
37. VOS, P., HOGERS, R., BLEEKER, M., REIJANS, M., VAN DE LEE, T., HORNES, M., FRIJTERS, A., POT, J., PELEMAN, J. & KUIPER, M. (1995). AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23, 4407-4414.