Local extinction and recolonization, species effective population size, and modern human origins

Human Biology

Volumn 76, Issue 5, 2004, Pages 689-709

  Eller, Elise ^a   Hawks, John ^b   Relethford, John H ^c  

^a UNIVERSITY OF COLORADO DENVER   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

^c STATE UNIVERSITY OF NEW YORK   (United States)

Author keywords

Effective population size; Extinction; Human demographic history; Modern human origins; Population differentiation; Recolonization

Indexed keywords

BREEDING; DEMOGRAPHY; HUMAN; MIGRATION; MODEL; POPULATION DYNAMICS; POPULATION SIZE; REVIEW; SOCIAL STRUCTURE; SPECIES EXTINCTION;

EID: 13844286129     PISSN: 00187143     EISSN: None     Source Type: Journal    
DOI: 10.1353/hub.2005.0006     Document Type: Review

References (68)

1. Beaumont, M.A. 1999. Detecting population expansion and decline using microsatellites. Genetics 153:2,013-2,029.
2. Bergström, T.F., A. Josefsson, H.A. Erlich et al. 1998. Recent origin of HLA-DRB1 alleles and implications for human evolution. Nat. Genet. 18:237-242.
3. Binford, L., J.B. Birdsell, D. Damas et al. 1968. The magic numbers "25" and "500": Determinants of group size in modern and Pleistocene hunters. In Man the Hunter, R.B. Lee and I. DeVore, eds. Chicago: Aldine, 245-248.
4. Birdsell, J.B. 1958. On population structure in generalized hunting and collecting populations. Evolution 12:189-205.
5. Birdsell, J.B. 1968. Some predictions for the Pleistocene based on equilibrium systems among recent hunter-gatherers. In Man the Hunter, R.B. Lee and I. DeVore, eds. Chicago: Aldine, 229-240.
6. Birdsell, J.B. 1973. A basic demographic unit. Curr. Anthropol. 14:337-356.
7. Bodmer, W.F., and L.L. Cavalli-Sforza. 1976. Genetics, Evolution, and Man. San Francisco: W.H. Freeman.
8. Cavalli-Sforza, L.L., and W.F. Bodmer. 1971. The Genetics of Human Populations. San Francisco: W.H. Freeman.
9. Di Rienzo, A., P. Donnelly, C. Toomajian et al. 1998. Heterogeneity of microsatellite mutations within and between loci and implications for human demographic history. Genetics 148:1,269-1,284.
10. Eller, E. 2002. Population extinction and recolonization in human demographic history. Math. Biosci. 177/178:1-10.
11. Felsenstein, J. 1971. Inbreeding and variance effective numbers in populations with overlapping generations. Genetics 68:581-597.
12. Goldstein, D.B., L.A. Zhivotovsky, K. Nayar et al. 1996. Statistical properties of the variation at linked microsatellite loci: Implications for the history of the human Y chromosomes. Mol. Biol. Evol. 13:1,213-1,218.
13. Hale, K. 1962. Internal relationships of Arandic, central Australia. In Some Linguistic Types in Australia, A. Capell, ed. Oceania Linguistic Monographs 7. Sydney, Australia: University of Sydney, 177-183.
14. Hammer, M. 1995. A recent common ancestry for human Y chromosomes. Nature 378:376-378.
15. Harding, R.M., S.M. Fullerton, R.C. Griffiths et al. 1997. Archaic African and Asian lineages in the genetic ancestry of modern humans. Am. J. Hum. Genet. 60:772-789.
16. Harpending, H.C., S.T. Sherry, A.R. Rogers et al. 1993. The genetic structure of ancient human populations. Curr. Anthropol. 34:483-496.
17. Harris, E.E., and J. Hey. 1999. X chromosome evidence for ancient human histories. Proc. Natl. Acad. Sci. USA 96:3,320-3,324.
18. Hassan, F.A. 1981. Demographic Archaeology. New York: Academic Press.
19. Hawks, J. 1999. The Evolution of Human Population Size: A Synthesis of Genetic and Paleoanthropological Data. Ph.D. dissertation, University of Michigan, Ann Arbor.
20. Hawks, J.D., and M.H. Wolpoff. 2001. The four faces of Eve: Hypothesis compatibility and human origins. Quaternary Int. 75:41-50.
21. Jorde, L.B. 1980. The genetic structure of subdivided human populations: A review. In Current Developments in Anthropological Genetics, v. 1, Theory and Methods, J.H. Mielke and M.H. Crawford, eds. New York: Plenum Press, 135-208.
22. Jorde, L.B., W.S. Watkins, M.J. Bamshad et al. 2000. The distribution of human genetic diversity: A comparison of mitochondrial, autosomal, and Y-chromosomal data. Am. J. Hum. Genet. 66:979-988.
23. Kaessmann, H., F. Heissig, A. von Haeseler et al. 1999. DNA sequence variation in a noncoding region of low recombination on the human X chromosome. Nat. Genet. 22:78-81.
24. Kimmel, M., R. Chakraborty, J.P. King et al. 1998. Signatures of population expansion in microsatellite repeat data. Genetics 148:1,921-1,930.
25. Klein, R.G. 1987. The Human Career: Human Biological and Cultural Origins. Chicago: University of Chicago Press.
26. Labuda, D., E. Zietkiewicz, and V. Yotova. 2000. Archaic lineages in the history of modern humans. Genetics 156:799-808.
27. Lee, R.B., and I. DeVore. 1968. Problems in the study of hunters and gatherers. In Man the Hunter, R.B. Lee and I. DeVore, eds. Chicago: Aldine, 3-12.
28. Manderscheid, E.J., J.A. Brannan, and A.R. Rogers. 1994. Is migration kin structured? Hum. Biol. 66:49-57.
29. Marth, G., G. Schuler, R. Yeh et al. 2003. Sequence variations in the public human genome data reflect a bottlenecked population history. Proc. Natl. Acad. Sci. USA 100:376-381.
30. Maruyama, T., and M. Kimura. 1980. Genetic variability and effective population size when local extinction and recolonization of subpopulations are frequent. Proc. Natl. Acad. Sci. USA 77:6,710-6,714.
31. Nei, M. 1987. Molecular Evolutionary Genetics. New York: Columbia University Press.
32. Nei, M., and D. Graur. 1984. Extent of protein polymorphism and the neutral mutation theory. In Evolutionary Biology, B. Wallace, M.K. Hecht, and G.T. Prance, eds. New York: Plenum Press, v. 17, 73-118.
33. Nordborg, M. 1998. On the probability of Neanderthal ancestry. Am. J. Hum. Genet. 63:1,237-1,240.
34. Reich, D.E., M. Cargill, S. Bolk et al. 2001. Linkage disequilibrium in the human genome. Nature 411:199-204.
35. Reich, D.E., and D.B. Goldstein. 1998. Genetic evidence for a Paleolithic human population expansion in Africa. Proc. Natl. Acad. Sci. USA 95:8,119-8,123.
36. Relethford, J.H. 1995. Genetics and modern human origins. Evol. Anthropol. 4:53-63.
37. Relethford, J.H. 2001a. Ancient DNA and the origin of modern humans. Proc. Natl. Acad. Sci. USA 4:53-63.
38. Relethford, J.H. 2001b. Genetics and the Search for Modern Human Origins. New York: Wiley.
39. Relethford, J.H., and H.C. Harpending. 1994. Craniometric variation, genetic theory, and modern human origins. Am. J. Phys. Anthropol. 95:249-270.
40. Relethford, J.H., and L.B. Jorde. 1999. Genetic evidence for larger African population size during recent human evolution. Am. J. Phys. Anthropol. 108:251-260.
41. Rogers, A.R. 1997. Population structure and modern human origins. In Progress in Population Genetics and Human Evolution, P. Donnelly and S. Tavaré, eds. New York: Springer-Verlag, 55-79.
42. Rogers, A.R., and H.C. Harpending. 1986. Migration and genetic drift in human populations. Evolution 40:1,312-1,327.
43. Rogers, A.R., and H.C. Harpending. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9:552-569.
44. Rogers, A.R., and L.B. Jorde. 1995. Genetic evidence on modern human origins. Hum. Biol. 67:1-36.
45. Sherry, S.T., H.C. Harpending, M.A. Batzer et al. 1997. Alu evolution in human populations: Using the coalescent to estimate effective population size. Genetics 147:1,977-1,982.
46. Slatkin, M. 1977. Gene flow and genetic drift in a species subject to frequent local extinctions. Theor. Popul. Biol. 12:253-262.
47. Soltis, J., R. Boyd, and P.J. Richerson. 1995. Can group-functional behaviors evolve by cultural group selection? Curr. Anthropol. 36:473-494.
48. Stephens, J.C., J.A. Schneider, D.A. Tanguay et al. 2001. Haplotype variation and linkage disequilibrium in 313 human genes. Science 293:489-493.
49. Takahata, N. 1993. Allelic genealogy and human evolution. Mol Biol Evol 10:2-22.
50. Takahata, N. 1995. A genetic perspective on the origin and history of humans. Annu. Rev. Ecol. Syst. 26:343-372.
51. Takahata, N., and Y. Satta. 1997. Evolution of the primate lineage leading to modern humans: Phylogenetic and demographic inferences from DNA sequences. Proc. Natl. Acad. Sci. USA 94:4,811-4,815.
52. Templeton, A.R. 1998. Human races: A genetic and evolutionary perspective. Am. Anthropol. 100:632-650.
53. Tindale, N.B. 1953. Tribal and intertribal marriage among the Australian aborigines. Hum. Biol. 25:169-190.
54. Tishkoff, S.A., E. Dietzsch, W. Speed et al. 1996. Global patterns of linkage disequilibrium at the CD4 locus and modern human origins. Science 271:1,380-1,387.
55. Trinkaus, E. 1995. Neanderthal mortality patterns. J. Archeol. Sci. 22:121-142.
56. Wakeley, J. 1999. Nonequilibrium migration in human history. Genetics 153:1,863-1,871.
57. Weiss, K.M., and T. Maruyama. 1976. Archeology, population genetics, and studies of human racial ancestry. Am. J. Phys. Anthropol. 44:31-50.
58. Whitlock, M.C., and N.H. Barton. 1997. The effective size of a subdivided population. Genetics 146:427-441.
59. Whitlock, M.C., and D.E. McCauley. 1990. Some population genetic consequences of colony formation and extinction: Genetic correlations within founding groups. Evolution 44:1,717-1,724.
60. Wilson, A.C., R.L. Cann, S.M. Carr et al. 1985. Mitochondrial DNA and two perspectives on evolutionary genetics. Biol. J. Linn. Soc. 26:375-400.
61. Wobst, H.M. 1976. Locational relationships in Paleolithic society. In The Demographic Evolution of Human Populations, R.H. Ward and K.M. Weiss, eds. San Francisco: Academic Press, 49-58.
62. Wolpoff, M.H. 1999. Paleoanthropology, 2nd ed. New York: McGraw-Hill.
63. Wolpoff, M.H., X. Wu, and A.G. Thorne. 1984. Modern Homo sapiens origins: A general theory of hominid evolution involving the fossil evidence from East Asia. In The Origins of Modern Humans: A World Survey of the Fossil Evidence, F.H. Smith and F. Spencer, eds. New York: Alan R. Liss, 411-483.
64. Wright, S. 1940. Breeding structure of populations in relation to speciation. Am. Nat. 74:232-248.
65. Wright, S. 1943. Isolation by distance. Genetics 28:114-138.
66. Yu, N., Y.-X. Fu, and W.-H. Li. 2002. DNA polymorphisms in a worldwide sample of human X chromosomes. Mol. Biol. Evol. 19:2,131-2,141.
67. Zhao, Z., L. Jin, Y.-Z. Fu et al. 2000. Worldwide DNA sequence variation in a 10-kilobase noncoding region on human chromosome 22. Proc. Natl. Acad. Sci. USA 97:11,354-11,358.
68. Zhivotovsky, L.A., L. Bennett, A.M. Bowcock et al. 2000. Human population expansion and microsatellite variation. Mol. Biol. Evol. 17:757-767.