SNP analysis system for detecting complex disease associated sites

Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003

Volumn , Issue , 2003, Pages 450-451

  Higashi, Y ^a   Higuchi, H ^a   Kido, T ^b   Matsumine, H ^b   Baba, M ^b   Morimoto, T ^a   Muramatsu, M ^b,c  

^a NTT DATA Corporation   (Japan)

^b HuBit Genomix Inc   (Japan)

^c TOKYO MEDICAL AND DENTAL UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GENES;

ANALYSIS SYSTEM; DISEASE ASSOCIATIONS; GENOMIC STRUCTURE; IN-DEPTH ANALYSIS; LINKAGE DISEQUILIBRIUM; SINGLE NUCLEOTIDE POLYMORPHISMS; STATISTICAL POWER; VISUALIZATION TOOLS;

BIOINFORMATICS;

EID: 13844252342     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/CSB.2003.1227368     Document Type: Conference Paper

References (11)

1. J.M.Rommens et al, "Identification of the cystic fibrosis gene: chromosome walking and jumping", Science 245: 1059-1065 (1989)
2. K.Ozaki et al, "Functional SNPs in the lymphotoxin-σ gene that are associated with susceptibility to myocardial infarction", Nature Genet. 1047 (2002)
3. D.Fallin et al., "Genetic analysis of case/control data using estimated haplotype frequencies: application to APOE locus variation and Alzheimer's disease", Genome Res 11: 143-151 (2001)
4. A.G.Clark, "Inference of haplotypes from PCR-amplified samples of diploid populations", Mol.Biol.Evol. 7: 111-122
5. L.Excoffier and M.Slatkin, "Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population", Mol.Biol.Evol. 12: 921-927
6. M.Stephens et al., "A New Statistical Method for Haplotype Reconstruction from Population Data", Am.J.Hum.Genet. 68: 978-989 (2001)
7. T.Niu et al., "Bayesian Haplotype Inference for Multiple Linked Single-Nucleotide Polymorphisms", Am.J.Hum.Genet. 70: 157-169 (2002)
8. C.F.Xu et al., "Effectiveness of computational methods in haplotype prediction", Hum.Genet. 110: 148-156
9. Y.Kitamura et al., "Determination of probability distribution of diplotype configuration (diplotype distribution) for each subject from genotypic data using the EM algorithm", Ann.Hum.Genet. 66: 183-193
10. X.Xi and J.Ott, "Testing linkage disequilibrium between a disease gene and marker loci", Am.J.Hum.Genet. 53: 1107 (1993)
11. J.Zhang et al., "HapScope: a software system for automated and visual analysis of functionally annotated haplotypes", Nucl.Acid.Res. 30: 5213-5221 (2002)