메뉴 건너뛰기




Volumn 25, Issue 1-2, 2004, Pages 139-170

Biology databases for the new life sciences

Author keywords

Bioinformatics; Data mining; Databases; Genomics; Microarrays

Indexed keywords

BIOLOGY; DATA HANDLING; DATA MINING; DIGITAL LIBRARIES; INFORMATION RETRIEVAL;

EID: 13644254948     PISSN: 0194262X     EISSN: None     Source Type: Journal    
DOI: 10.1300/J122v25n01_10     Document Type: Article
Times cited : (3)

References (49)
  • 3
    • 0036565607 scopus 로고    scopus 로고
    • Molecular biology nomenclature thwarts information-extraction progress
    • Blaschke, C. and A. Valencia. 2002. Molecular biology nomenclature thwarts information-extraction progress. IEEE Intelligent Systems 17(3): 73-76.
    • (2002) IEEE Intelligent Systems , vol.17 , Issue.3 , pp. 73-76
    • Blaschke, C.1    Valencia, A.2
  • 4
    • 0242416660 scopus 로고    scopus 로고
    • Putting gene arrays to the test
    • (11 April)
    • Branca, M. 2003. Putting gene arrays to the test. Science 300 (11 April): 238.
    • (2003) Science , vol.300 , pp. 238
    • Branca, M.1
  • 5
    • 0033119399 scopus 로고    scopus 로고
    • Errors in genome annotation
    • Brenner, S. E. 1999. Errors in genome annotation. TIG 15(4): 132-133.
    • (1999) TIG , vol.15 , Issue.4 , pp. 132-133
    • Brenner, S.E.1
  • 6
    • 13644252140 scopus 로고    scopus 로고
    • Celera genomics: Groups deny they are racing
    • Celera Genomics (July)
    • Celera Genomics. 2000. Celera Genomics: Groups Deny They are Racing. Biotech Week 5(July):18-19.
    • (2000) Biotech. Week , vol.5 , pp. 18-19
  • 7
    • 0034189155 scopus 로고    scopus 로고
    • Plant genome databases: From references to inference tools
    • Dicks, J. 2000. Plant genome databases: From references to inference tools. Briefings in Bioinformatics 1(2): 138-150.
    • (2000) Briefings in Bioinformatics , vol.1 , Issue.2 , pp. 138-150
    • Dicks, J.1
  • 8
    • 0035895514 scopus 로고    scopus 로고
    • Proteomics in genomeland
    • Fields, S. 2001. Proteomics in genomeland. Science 291(5507): 1221-1224.
    • (2001) Science , vol.291 , Issue.5507 , pp. 1221-1224
    • Fields, S.1
  • 9
    • 0242416659 scopus 로고    scopus 로고
    • Realizing the potential of the genome revolution: The genomes to life program
    • Frazier, M. E., G. M. Johnson, D. G. Thomassen, C. E. Oliver and A. Patrinos. 2003. Realizing the potential of the genome revolution: The Genomes to Life Program. Science 300 (5617): 290-293.
    • (2003) Science , vol.300 , Issue.5617 , pp. 290-293
    • Frazier, M.E.1    Johnson, G.M.2    Thomassen, D.G.3    Oliver, C.E.4    Patrinos, A.5
  • 12
    • 13644270163 scopus 로고    scopus 로고
    • Genbank. NCBI-GenBank Flat File Release
    • Genbank. 2003. NCBI-GenBank Flat File Release 138.0. ftp://ftp.ncbi.nih. gov/genbank/gbrel.txt.
    • (2003)
  • 13
    • 0035377403 scopus 로고    scopus 로고
    • Sharing gene expression data: An array of options
    • Geschwind, D. H. 2001. Sharing gene expression data: An array of options. Nature Reviews Neuroscience 2(6): 435-438.
    • (2001) Nature Reviews Neuroscience , vol.2 , Issue.6 , pp. 435-438
    • Geschwind, D.H.1
  • 14
    • 13644263069 scopus 로고    scopus 로고
    • Genome, proteome, and the quest for a full structure-function description of an organism
    • London: Nature Publishing Group. [doi: 10.1038/npg.els.0003024]
    • Hung, L. W. and S. H. Kim. 2000. Genome, proteome, and the quest for a full structure-function description of an organism. Nature Encyclopedia of Life Sciences. London: Nature Publishing Group. http://www.els.net/ [doi: 10.1038/npg.els.0003024].
    • (2000) Nature Encyclopedia of Life Sciences
    • Hung, L.W.1    Kim, S.H.2
  • 15
    • 0035042776 scopus 로고    scopus 로고
    • A literature network of human genes for high-throughput analysis of gene expression
    • Jenssen, T. K., A. Laegried, J. Kmorowski and E. Hovig. 2001. A literature network of human genes for high-throughput analysis of gene expression. Nature Genetics 28(1): 21-28.
    • (2001) Nature Genetics , vol.28 , Issue.1 , pp. 21-28
    • Jenssen, T.K.1    Laegried, A.2    Kmorowski, J.3    Hovig, E.4
  • 16
    • 13644258287 scopus 로고
    • Preface to the English Dictionary
    • Cambridge, MA: Harvard University Press
    • Johnson, S. 1773. Preface to the English Dictionary. Johnson Prose and Poetry. Cambridge, MA: Harvard University Press: 302-323.
    • (1773) Johnson Prose and Poetry , pp. 302-323
    • Johnson, S.1
  • 17
    • 0034961746 scopus 로고    scopus 로고
    • Database verification studies of SWISS-PROT and GenBank
    • Karp, P. D., S. Paley and J. Zhu. 2001. Database verification studies of SWISS-PROT and GenBank. Bioinformatics 17(6): 526-532.
    • (2001) Bioinformatics , vol.17 , Issue.6 , pp. 526-532
    • Karp, P.D.1    Paley, S.2    Zhu, J.3
  • 19
    • 13644270164 scopus 로고    scopus 로고
    • Ithaca, NY: Cornell Computational Biology Service Unit
    • Lin, D. 2003. Various Stuff About Microarrays, Ithaca, NY: Cornell Computational Biology Service Unit.
    • (2003) Various Stuff About Microarrays
    • Lin, D.1
  • 20
    • 0035755746 scopus 로고    scopus 로고
    • Exploiting big biology: Integrating large-scale biological data for function inference
    • Marcotte, E. M. and S. V. Date. 2001. Exploiting big biology: Integrating large-scale biological data for function inference. Briefings in Bioinformatics 2(4): 363-374.
    • (2001) Briefings in Bioinformatics , vol.2 , Issue.4 , pp. 363-374
    • Marcotte, E.M.1    Date, S.V.2
  • 21
    • 0035031110 scopus 로고    scopus 로고
    • Linking microarray data to the literature
    • Masys, D. R. 2001. Linking microarray data to the literature. Nature Genetics 28(1): 9-10.
    • (2001) Nature Genetics , vol.28 , Issue.1 , pp. 9-10
    • Masys, D.R.1
  • 22
    • 13644250535 scopus 로고    scopus 로고
    • National Center for Biotechnology Information. 2003. PubMed Overview
    • National Center for Biotechnology Information. 2003. PubMed Overview. http://www.ncbi.nlm.nih.gov/entrez/query/static/overview.html.
  • 23
    • 84920544054 scopus 로고    scopus 로고
    • Microarrays: Chipping away at the mysteries of science and medicine
    • NCBI
    • NCBI 2003a. Microarrays: Chipping away at the mysteries of science and medicine. http://www.ncbi.nlm.nih.gov/About/primer/microarrays.html.
    • (2003)
  • 24
    • 84920507985 scopus 로고    scopus 로고
    • Molecular modeling: A method for unraveling protein structure and function
    • NCBI www.ncbi.nlm.nih.gov/About/primer/molecularmod.html
    • NCBI 2003b. Molecular modeling: A method for unraveling protein structure and function. www.ncbi.nlm.nih.gov/About/primer/molecularmod. html.
    • (2003)
  • 25
    • 13644263068 scopus 로고    scopus 로고
    • What is a genome?
    • NCBI
    • NCBI 2003c. What is a genome? http://www.ncbi.nlm.nih.gov/About/primer/ genetics_genome.html.
    • (2003)
  • 26
    • 0242549736 scopus 로고    scopus 로고
    • Guidelines for ensuring and maximizing the quality, objectivity, utility, and integrity of information disseminated by Federal Agencies; Notice; Republication
    • Office of Management and Budget
    • Office of Management and Budget. 2002. Guidelines for ensuring and maximizing the quality, objectivity, utility, and integrity of information disseminated by Federal Agencies; Notice; Republication. Federal Register 67(36): 8451-8460.
    • (2002) Federal Register , vol.67 , Issue.36 , pp. 8451-8460
  • 27
    • 0036565623 scopus 로고    scopus 로고
    • Network biology: Data mining biological networks
    • Park, J. H. 2002. Network biology: Data mining biological networks. IEEE Intelligent Systems 17(3): 68-70.
    • (2002) IEEE Intelligent Systems , vol.17 , Issue.3 , pp. 68-70
    • Park, J.H.1
  • 28
    • 0033569629 scopus 로고    scopus 로고
    • Keeping genome database clean and up to date
    • Pennisi, E. 1999. Keeping genome database clean and up to date. Science 268(5439): 447-450.
    • (1999) Science , vol.268 , Issue.5439 , pp. 447-450
    • Pennisi, E.1
  • 29
    • 0036092260 scopus 로고    scopus 로고
    • Plant Ontology Consortium and plant ontology
    • Plant Ontology Consortium
    • Plant Ontology Consortium. 2002. Plant Ontology Consortium and plant ontology. Comparative and Functional Genomics 3(2): 137-142.
    • (2002) Comparative and Functional Genomics , vol.3 , Issue.2 , pp. 137-142
  • 31
    • 0037433059 scopus 로고    scopus 로고
    • A literature-based method for assessing the functional coherence of a gene group
    • Raychaudhuri, S. and R. B. Altman. 2003. A literature-based method for assessing the functional coherence of a gene group. Bioinformatics 19(3): 1-6.
    • (2003) Bioinformatics , vol.19 , Issue.3 , pp. 1-6
    • Raychaudhuri, S.1    Altman, R.B.2
  • 32
    • 0142235886 scopus 로고    scopus 로고
    • CLEAVER: Analyzing microarray data using known biological categories
    • Raychaudhuri, S., P. D. Sutphin, J. M. Stuart and R. B. Altman. 2000. CLEAVER: Analyzing microarray data using known biological categories. http://www-smi.stanford.edu/pubs/SMI_Reports/SMI-2000-0839.pdf.
    • (2000)
    • Raychaudhuri, S.1    Sutphin, P.D.2    Stuart, J.M.3    Altman, R.B.4
  • 33
    • 13644259689 scopus 로고    scopus 로고
    • PDB Protein Data Bank Annual Report
    • Research Collaboratory for Structural Bioinformatics
    • Research Collaboratory for Structural Bioinformatics. 2002. PDB Protein Data Bank Annual Report. http://www.rcsb.org/pdb/annual_report02.pdf.
    • (2002)
  • 34
    • 0034189146 scopus 로고    scopus 로고
    • Data warehousing in molecular biology
    • Schonbach, C. 2000. Data warehousing in molecular biology. Briefings in Bioinformatics 1(2): 190-198.
    • (2000) Briefings in Bioinformatics , vol.1 , Issue.2 , pp. 190-198
    • Schonbach, C.1
  • 36
    • 0035755549 scopus 로고    scopus 로고
    • Analysis of large-scale gene expression data
    • Sherlock, G. 2001. Analysis of large-scale gene expression data. Briefings in Bioinformatics 2(4): 350-362.
    • (2001) Briefings in Bioinformatics , vol.2 , Issue.4 , pp. 350-362
    • Sherlock, G.1
  • 37
    • 0036899286 scopus 로고    scopus 로고
    • From patterns to pathways: Gene expression data analysis comes of age
    • Slonim, D. K. 2002. From patterns to pathways: Gene expression data analysis comes of age. Nature Genetics 32(Supplement): 502-508.
    • (2002) Nature Genetics , vol.32 , pp. 502-508
    • Slonim, D.K.1
  • 38
    • 0034332545 scopus 로고    scopus 로고
    • Ontology-based knowledge representation for bioinformatics
    • Stevens, R., C. A. Goble and S. Bechhofer. 2000. Ontology-based knowledge representation for bioinformatics. Briefings in Bioinformatics 1(4): 398-414.
    • (2000) Briefings in Bioinformatics , vol.1 , Issue.4 , pp. 398-414
    • Stevens, R.1    Goble, C.A.2    Bechhofer, S.3
  • 40
    • 0033057344 scopus 로고    scopus 로고
    • Reproducibility in genome sequence annotation: The plasmodium falciparum
    • chromosome 2 case
    • Tsoka, S., V. Promponas and C. A. Ouzounis. 1999. Reproducibility in genome sequence annotation: The Plasmodium falciparum chromosome 2 case. FEBS Letters 451(3): 354-355.
    • (1999) FEBS Letters , vol.451 , Issue.3 , pp. 354-355
    • Tsoka, S.1    Promponas, V.2    Ouzounis, C.A.3
  • 41
    • 13644257481 scopus 로고    scopus 로고
    • Digging into digital quarries
    • (October 2003)
    • Uehling, M. D. 2003a. Digging into digital quarries. Bio-IT World (October 2003): 38-42.
    • (2003) Bio-IT World , pp. 38-42
    • Uehling, M.D.1
  • 42
    • 13644267530 scopus 로고    scopus 로고
    • Is data quality really job 1?
    • (February 2003)
    • Uehling, M. D. 2003b. Is data quality really job 1? Bio-IT World (February 2003): 11.
    • (2003) Bio-IT World , pp. 11
    • Uehling, M.D.1
  • 43
    • 1642341750 scopus 로고    scopus 로고
    • University of Chicago Press. 15th ed. Chicago: University of Chicago Press
    • University of Chicago Press. 2003. The Chicago Manual of Style, 15th ed. Chicago: University of Chicago Press.
    • (2003) The Chicago Manual of Style
  • 44
    • 0033533829 scopus 로고    scopus 로고
    • How to bring collections data into the net
    • (7 October)
    • Winker, K. 1999. How to bring collections data into the net. Nature 401(7 October): 524.
    • (1999) Nature , vol.401 , pp. 524
    • Winker, K.1
  • 45
    • 0035348948 scopus 로고    scopus 로고
    • Analysis and comparison of metabolic pathway databases
    • Wittig, U. and A. Beuckelar. 2001. Analysis and comparison of metabolic pathway databases. Briefings in Bioinformatics 2(2): 126-142.
    • (2001) Briefings in Bioinformatics , vol.2 , Issue.2 , pp. 126-142
    • Wittig, U.1    Beuckelar, A.2
  • 46
    • 0034281303 scopus 로고    scopus 로고
    • Proteomic databases and software on the Web
    • Wojcik, J. and V. Schachter. 2000. Proteomic databases and software on the Web. Briefings in Bioinformatics 1(3): 250-59.
    • (2000) Briefings in Bioinformatics , vol.1 , Issue.3 , pp. 250-259
    • Wojcik, J.1    Schachter, V.2
  • 47
    • 0036649020 scopus 로고    scopus 로고
    • Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters
    • Wu, L. F., T. R. Hughes, A. P. Davierwala, M. D. Robinson, R. Stoughton and S. J. Altschuler. 2002. Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters. Nature Genetics 31(3): 255-265.
    • (2002) Nature Genetics , vol.31 , Issue.3 , pp. 255-265
    • Wu, L.F.1    Hughes, T.R.2    Davierwala, A.P.3    Robinson, M.D.4    Stoughton, R.5    Altschuler, S.J.6
  • 49
    • 0036325427 scopus 로고    scopus 로고
    • Genomics and natural language processing
    • Yandell, M. D. and W. H. Majoros. 2002. Genomics and natural language processing. Nature Reviews Genetics 3(8): 601-610.
    • (2002) Nature Reviews Genetics , vol.3 , pp. 601-610
    • Yandell, M.D.1    Majoros, W.H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.