메뉴 건너뛰기




Volumn 3, Issue , 2004, Pages

RNA-binding proteins to assess gene expression states of co-cultivated cells in response to tumor cells

Author keywords

[No Author keywords available]

Indexed keywords

CAP BINDING PROTEIN; EPITOPE; HU PROTEIN; MESSENGER RNA; POLYADENYLIC ACID BINDING PROTEIN; RNA BINDING PROTEIN;

EID: 13644250272     PISSN: 14764598     EISSN: None     Source Type: Journal    
DOI: 10.1186/1476-4598-3-24     Document Type: Article
Times cited : (32)

References (44)
  • 1
    • 0036328380 scopus 로고    scopus 로고
    • Application of microarrays to the analysis of gene expression in cancer
    • Macgregor PF, Squire JA: Application of microarrays to the analysis of gene expression in cancer. Clin Chem 2002, 48(8): 170-1177.
    • (2002) Clin. Chem. , vol.48 , Issue.8 , pp. 1170-1177
    • Macgregor, P.F.1    Squire, J.A.2
  • 2
    • 0036264911 scopus 로고    scopus 로고
    • Microarrays and molecular markers for tumor classification
    • comment 2005
    • Ring BZ, Ross DT: Microarrays and molecular markers for tumor classification. Genome Biol 2002, 3(5):. comment 2005
    • (2002) Genome Biol. , vol.3 , Issue.5
    • Ring, B.Z.1    Ross, D.T.2
  • 3
    • 0034614637 scopus 로고    scopus 로고
    • The hallmarks of cancer
    • Hanahan D, Weinberg RA: The hallmarks of cancer. Cell 2000, 100(1):57-70.
    • (2000) Cell , vol.100 , Issue.1 , pp. 57-70
    • Hanahan, D.1    Weinberg, R.A.2
  • 4
    • 0028929803 scopus 로고
    • Angiogenesis in cancer, vascular, rheumatoid and other disease
    • Folkman J: Angiogenesis in cancer, vascular, rheumatoid and other disease. Nat Med 1995, 1(1):27-31.
    • (1995) Nat. Med. , vol.1 , Issue.1 , pp. 27-31
    • Folkman, J.1
  • 5
    • 0034903169 scopus 로고    scopus 로고
    • DNA microarrays and beyond: Completing the journey from tissue to cell
    • Mills JC, Roth KA, Cagan RL, Gordon JI: DNA microarrays and beyond: completing the journey from tissue to cell. Nat Cell Biol 2001, 3(8):E175-178.
    • (2001) Nat. Cell Biol. , vol.3 , Issue.8
    • Mills, J.C.1    Roth, K.A.2    Cagan, R.L.3    Gordon, J.I.4
  • 6
    • 0034812985 scopus 로고    scopus 로고
    • Use of laser capture microdissection, cDNA microarrays, and tissue microarrays in advancing our understanding of prostate cancer
    • Rubin MA: Use of laser capture microdissection, cDNA microarrays, and tissue microarrays in advancing our understanding of prostate cancer. J Pathol 2001, 195(1):80-86.
    • (2001) J. Pathol. , vol.195 , Issue.1 , pp. 80-86
    • Rubin, M.A.1
  • 8
    • 0035912793 scopus 로고    scopus 로고
    • Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome
    • Keene JD: Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome. Proc Natl Acad Sci U S A 2001, 98(13):7018-7024.
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , Issue.13 , pp. 7018-7024
    • Keene, J.D.1
  • 9
    • 0036289532 scopus 로고    scopus 로고
    • Eukaryotic mRNPs may represent posttranscriptional operons
    • Keene J, Tenenbaum S: Eukaryotic mRNPs may represent posttranscriptional operons. Mol Cell 2002, 9(6): 161-1167.
    • (2002) Mol. Cell , vol.9 , Issue.6 , pp. 1161-1167
    • Keene, J.1    Tenenbaum, S.2
  • 10
    • 0034687794 scopus 로고    scopus 로고
    • Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays
    • Tenenbaum SA, Carson CC, Lager PJ, Keene JD: Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays. Proc Natl Acad Sci U S A 2000, 97(26 ):14085-14090.
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , Issue.26 , pp. 14085-14090
    • Tenenbaum, S.A.1    Carson, C.C.2    Lager, P.J.3    Keene, J.D.4
  • 12
    • 0028054162 scopus 로고
    • Selection of a subset of mRNAs from combinatorial 3′ untranslated region libraries using neuronal RNA-binding protein Hel-N1
    • Gao FB, Carson CC, Levine T, Keene JD: Selection of a subset of mRNAs from combinatorial 3′ untranslated region libraries using neuronal RNA-binding protein Hel-N1. Proc Natl Acad Sci U S A 1994, 91(23):11207-11211.
    • (1994) Proc. Natl. Acad. Sci. U. S. A. , vol.91 , Issue.23 , pp. 11207-11211
    • Gao, F.B.1    Carson, C.C.2    Levine, T.3    Keene, J.D.4
  • 13
    • 0037313537 scopus 로고    scopus 로고
    • Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery
    • Hieronymus H, Silver PA: Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery. Nat Genet 2003, 33(2):155-161.
    • (2003) Nat. Genet. , vol.33 , Issue.2 , pp. 155-161
    • Hieronymus, H.1    Silver, P.A.2
  • 14
    • 2942561052 scopus 로고    scopus 로고
    • Genome-wide analysis mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors
    • Grigull J, Mnaimneh S, Pootoolal J, Robinson MD, Hughes TR: Genome-wide analysis mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors. Mol Cell Biol 2004, 24:5534-5547.
    • (2004) Mol. Cell Biol. , vol.24 , pp. 5534-5547
    • Grigull, J.1    Mnaimneh, S.2    Pootoolal, J.3    Robinson, M.D.4    Hughes, T.R.5
  • 15
    • 19344365947 scopus 로고    scopus 로고
    • Extensive Association of Functionally and Cytotopically Related mRNAs with Puf Family RNA-Binding Proteins in Yeast
    • Gerber AP, Herschlag D, Brown PO: Extensive Association of Functionally and Cytotopically Related mRNAs with Puf Family RNA-Binding Proteins in Yeast. Plos 2004, 2:342-354.
    • (2004) Plos , vol.2 , pp. 342-354
    • Gerber, A.P.1    Herschlag, D.2    Brown, P.O.3
  • 16
    • 0041315722 scopus 로고    scopus 로고
    • La protein is associated with TOP mRNAs in actively translating polysomes
    • Cardinali B, Carissimi C, Gravina P, Pierandrei-Amaldi P: La protein is associated with TOP mRNAs in actively translating polysomes. J Biol Chem 2003, 278:35145-35151.
    • (2003) J. Biol. Chem. , vol.278 , pp. 35145-35151
    • Cardinali, B.1    Carissimi, C.2    Gravina, P.3    Pierandrei-Amaldi, P.4
  • 18
    • 0345276475 scopus 로고    scopus 로고
    • Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs
    • Intine RV, Tenenbaum SA, Sakulich AL, Keene JD, Maraia RJ: Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs. Mol Cell 2004, 12:1301-1307.
    • (2004) Mol. Cell , vol.12 , pp. 1301-1307
    • Intine, R.V.1    Tenenbaum, S.A.2    Sakulich, A.L.3    Keene, J.D.4    Maraia, R.J.5
  • 19
    • 0037194732 scopus 로고    scopus 로고
    • Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans
    • Roy PJ, Stuart JM, Lund J, Kim SK: Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. Nature 2002, 418(6901):975-979.
    • (2002) Nature , vol.418 , Issue.6901 , pp. 975-979
    • Roy, P.J.1    Stuart, J.M.2    Lund, J.3    Kim, S.K.4
  • 20
    • 0034282752 scopus 로고    scopus 로고
    • Multiple portions of poly(A)-binding protein stimulate translation in vivo
    • Gray NK, Coller JM, Dickson KS, Wickens M: Multiple portions of poly(A)-binding protein stimulate translation in vivo. Embo J 2000, 19(17):4723-4733.
    • (2000) Embo J. , vol.19 , Issue.17 , pp. 4723-4733
    • Gray, N.K.1    Coller, J.M.2    Dickson, K.S.3    Wickens, M.4
  • 21
    • 0004041025 scopus 로고    scopus 로고
    • Cold Spring Harbor, NY: Cold Spring Harbor Press
    • Sonenberg N: Translational Control. Cold Spring Harbor, NY: Cold Spring Harbor Press; 2000.
    • (2000) Translational Control
    • Sonenberg, N.1
  • 22
    • 0032541485 scopus 로고    scopus 로고
    • A tale of two termini: A functional interaction between the termini of an mRNA is a prerequisite for efficient translation initiation
    • Gallie DR: A tale of two termini: a functional interaction between the termini of an mRNA is a prerequisite for efficient translation initiation. Gene 1998, 216(1):1-11.
    • (1998) Gene , vol.216 , Issue.1 , pp. 1-11
    • Gallie, D.R.1
  • 23
    • 0004041025 scopus 로고    scopus 로고
    • ed: Cold Spring Harbor, NY: Cold Spring Harbor Press
    • Jacobson A, ed: Translational Control. Cold Spring Harbor, NY: Cold Spring Harbor Press; 1996.
    • (1996) Translational Control
    • Jacobson, A.1
  • 24
    • 0024591905 scopus 로고
    • The poly(A)-poly(A)-binding protein complex is a major determinant of mRNA stability in vitro
    • Bernstein P, Peltz SW, Ross J: The poly(A)-poly(A)-binding protein complex is a major determinant of mRNA stability in vitro. Mol Cell Biol 1989, 9(2):659-670.
    • (1989) Mol. Cell Biol. , vol.9 , Issue.2 , pp. 659-670
    • Bernstein, P.1    Peltz, S.W.2    Ross, J.3
  • 25
    • 0032539532 scopus 로고    scopus 로고
    • Wheat germ poly(A) binding protein enhances the binding affinity of eukaryotic initiation factor 4F and (iso)4F for cap analogues
    • Wei CC, Balasta ML, Ren J, Goss DJ: Wheat germ poly(A) binding protein enhances the binding affinity of eukaryotic initiation factor 4F and (iso)4F for cap analogues. Biochemistry 1998, 37(7):1910-1916.
    • (1998) Biochemistry , vol.37 , Issue.7 , pp. 1910-1916
    • Wei, C.C.1    Balasta, M.L.2    Ren, J.3    Goss, D.J.4
  • 26
    • 0030041959 scopus 로고    scopus 로고
    • Overexpression of poly(A) binding protein prevents maturation-specific deadenylation and translational inactivation in Xenopus oocytes
    • Wormington M, Searfoss AM, Hurney CA: Overexpression of poly(A) binding protein prevents maturation-specific deadenylation and translational inactivation in Xenopus oocytes. Embo J 1996, 15(4):900-909.
    • (1996) Embo J. , vol.15 , Issue.4 , pp. 900-909
    • Wormington, M.1    Searfoss, A.M.2    Hurney, C.A.3
  • 27
    • 0023405161 scopus 로고
    • A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability
    • Sachs AB, Davis RW, Kornberg RD: A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability. Mol Cell Biol 1987, 7(9):3268-3276.
    • (1987) Mol. Cell Biol. , vol.7 , Issue.9 , pp. 3268-3276
    • Sachs, A.B.1    Davis, R.W.2    Kornberg, R.D.3
  • 28
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi SP, Rochon Y, Franza BR, Aebersold R: Correlation between protein and mRNA abundance in yeast. Mol Cell Biol 1999, 19(3):1720-1730.
    • (1999) Mol. Cell Biol. , vol.19 , Issue.3 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 30
    • 0036545614 scopus 로고    scopus 로고
    • Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
    • Griffin TJ, Gygi SP, Ideker T, Rist B, Eng J, Hood L, Aebersold R: Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol Cell Proteomics 2002, 1(4):323-333.
    • (2002) Mol. Cell Proteomics , vol.1 , Issue.4 , pp. 323-333
    • Griffin, T.J.1    Gygi, S.P.2    Ideker, T.3    Rist, B.4    Eng, J.5    Hood, L.6    Aebersold, R.7
  • 31
    • 0031884519 scopus 로고    scopus 로고
    • Translational control: A general mechanism for gene regulation during T cell activation
    • Garcia-Sanz JA, Mikulits W, Livingstone A, Lefkovits I, Mullner EW: Translational control: a general mechanism for gene regulation during T cell activation. Faseb J 1998, 12(3 : 99-306.
    • (1998) Faseb J. , vol.12 , Issue.3 , pp. 299-306
    • Garcia-Sanz, J.A.1    Mikulits, W.2    Livingstone, A.3    Lefkovits, I.4    Mullner, E.W.5
  • 33
    • 0032545421 scopus 로고    scopus 로고
    • Negative control of the poly(A)-binding protein mRNA translation is mediated by the adenine-rich region of its 5′-untranslated region
    • Wu J, Bag J: Negative control of the poly(A)-binding protein mRNA translation is mediated by the adenine-rich region of its 5′-untranslated region. J Biol Chem 1998, 273(51 : 4535-34542.
    • (1998) J. Biol. Chem. , vol.273 , Issue.51 , pp. 34535-34542
    • Wu, J.1    Bag, J.2
  • 34
    • 0023053585 scopus 로고
    • A single gene from yeast for both nuclear and cytoplasmic polyadenylate-binding proteins: Domain structure and expression
    • Sachs AB, Bond MW, Kornberg RD: A single gene from yeast for both nuclear and cytoplasmic polyadenylate-binding proteins: domain structure and expression. Cell 1986, 45(6):827-835.
    • (1986) Cell , vol.45 , Issue.6 , pp. 827-835
    • Sachs, A.B.1    Bond, M.W.2    Kornberg, R.D.3
  • 35
    • 0032826096 scopus 로고    scopus 로고
    • Formation of the 3′ end of histone mRNA
    • Dominski Z, Marzluff WF: Formation of the 3′ end of histone mRNA. Gene 1999, 239:1-14.
    • (1999) Gene , vol.239 , pp. 1-14
    • Dominski, Z.1    Marzluff, W.F.2
  • 36
    • 0030808440 scopus 로고    scopus 로고
    • Translational repressor bruno plays multiple roles in development and is widely conserved
    • Webster PJ, Liang L, Berg CA, Lasko P, Macdonald PM: Translational repressor bruno plays multiple roles in development and is widely conserved. Genes Dev 1997, 11:2510-2521.
    • (1997) Genes Dev. , vol.11 , pp. 2510-2521
    • Webster, P.J.1    Liang, L.2    Berg, C.A.3    Lasko, P.4    Macdonald, P.M.5
  • 37
    • 0032519750 scopus 로고    scopus 로고
    • Molecular defects in the dysmyelinating mutant quaking
    • Hardy R: Molecular defects in the dysmyelinating mutant quaking. J Neurosci Res 1998, 51:417-422.
    • (1998) J. Neurosci. Res. , vol.51 , pp. 417-422
    • Hardy, R.1
  • 38
    • 0023177629 scopus 로고
    • Evidence that the packaging signal of Moloney murine leukemia virus extends into the gag region
    • Bender MA, Palmer TD, Gelinas RE, Miller AD: Evidence that the packaging signal of Moloney murine leukemia virus extends into the gag region. J Virol 1987, 61(5):1639-1646.
    • (1987) J. Virol. , vol.61 , Issue.5 , pp. 1639-1646
    • Bender, M.A.1    Palmer, T.D.2    Gelinas, R.E.3    Miller, A.D.4
  • 39
    • 0025127420 scopus 로고
    • Quantitative determination that one of two potential RNA-binding domains of the A protein component of the U1 small nuclear ribonucleoprotein complex binds with high affinity to stem-loop II of U1 RNA
    • Lutz-Freyermuth C, Query CC, Keene JD: Quantitative determination that one of two potential RNA-binding domains of the A protein component of the U1 small nuclear ribonucleoprotein complex binds with high affinity to stem-loop II of U1 RNA. Proc Natl Acad Sci U S A 1990, 87(16):6393-6397.
    • (1990) Proc. Natl. Acad. Sci. U. S. A. , vol.87 , Issue.16 , pp. 6393-6397
    • Lutz-Freyermuth, C.1    Query, C.C.2    Keene, J.D.3
  • 40
    • 0032518828 scopus 로고    scopus 로고
    • Association of human CUL-1 and ubiquitin-conjugating enzyme CDC34 with the F-box protein p45(SKP2): Evidence for evolutionary conservation in the subunit composition of the CDC34-SCF pathway
    • Lisztwan J, Marti A, Sutterluty H, Gstaiger M, Wirbelauer C, Krek W: Association of human CUL-1 and ubiquitin-conjugating enzyme CDC34 with the F-box protein p45(SKP2): evidence for evolutionary conservation in the subunit composition of the CDC34-SCF pathway. Embo J 1998, 17(2):368-383.
    • (1998) Embo J. , vol.17 , Issue.2 , pp. 368-383
    • Lisztwan, J.1    Marti, A.2    Sutterluty, H.3    Gstaiger, M.4    Wirbelauer, C.5    Krek, W.6
  • 42
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP: Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 2002, 30(4):e15.
    • (2002) Nucleic Acids Res. , vol.30 , Issue.4
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 43
    • 4544341015 scopus 로고    scopus 로고
    • Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments
    • Article 3
    • Smyth GK: Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments. In: Statistical Applications in Genetics and Molecular Biology 2004, 3: Article 3
    • (2004) Statistical Applications in Genetics and Molecular Biology , vol.3
    • Smyth, G.K.1
  • 44
    • 0037336331 scopus 로고    scopus 로고
    • Open source software for the analysis of microarray data
    • Dudoit S, Gentleman RC, Quackenbush J: Open source software for the analysis of microarray data. Biotechniques 2003, Suppl:45-51.
    • (2003) Biotechniques , Issue.SUPPL. , pp. 45-51
    • Dudoit, S.1    Gentleman, R.C.2    Quackenbush, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.