Genetic relationship of Korean cattle (Hanwoo) based on nucleotide variation of mitochondrial D-loop region

Korean Journal of Genetics

Volumn 26, Issue 3, 2004, Pages 297-307

  Yum, Seungshic ^b   Suh, Ji Yoeun ^a   Woo, Seonock ^b   Jeon, Hyung Wook ^a   Kim, Keun Chong ^c   Suh, Dong Sang ^a  

^a Sungkyunkwan University   (South Korea)

^b Korea Research Institute of Ships and Ocean Engineering   (South Korea)

^c Hong Ik University   (South Korea)

Author keywords

D loop; Korean cattle; Mitochondrial DNA; Variation

Indexed keywords

MITOCHONDRIAL DNA; NUCLEOTIDE;

ANIMAL GENETICS; ANIMAL TISSUE; ARTICLE; CATTLE; COMPARATIVE STUDY; CONTROLLED STUDY; DNA DETERMINATION; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC DISTANCE; GENETIC VARIABILITY; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; SEQUENCE ANALYSIS;

ANIMALIA; BOS TAURUS;

EID: 13544277561     PISSN: 02545934     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (30)

1. Anderson S, de Bruijin MH, Coulson AR, Eperon IC, Sanger F and Young IG (1982) Complete sequence of bovine mitochondrial DNA. J. Mol. Biol. 156: 683-717.
2. Bradley DG, MacHugh DE, Cunningham P and Loftus RT (1996) Mitochondrial diversity and the origins of African and European cattle. Proc. Natl. Acad. Sci. 93: 5131-5135.
3. Brown WM (1985) The mitochondrial genome of animals. Molecular evolutionary genetics, Plenum, New York, 95-130 pp.
4. Brown WM, George M and Wilson AC (1979) Rapid evolution of mitochondrial DNA. Proc. Natl. Acad. Sci. 76: 1967-1971.
5. Chang D and Clyton DA (1985) Priming of human mitochondrial DNA replication occurs at the light strand promoter. Proc. Natl. Acad. Sci. 82: 351-355.
6. Choi JW and Kim W (2003) MtDNA sequence reveals a common origin of the majority of the 9-bp deletion haplotypes in East Asian populations. Korean J. Genetics 25: 109-117.
7. Cunningham EP (1992) Livestock Industry Development, The World Bank, Washington DC, 1-12 pp.
8. Gerald SW and Champman AM (1991) Length and sequence variation in evening bat D-loop mtDNA. Genetics 128: 607-617.
9. Han SH, Park SH, Lee JR, Kim IJ, Kim CK, Lee SB, Kwon MS and Kim JB (1993) Studies of the Identification of Hanwoo and Imported meat by RFLP Analysis Korean J. Anim. Sci. 35: 329.
10. Kikkawa Y, Amano T and Suzuki H (1995) Analysis of genetic diversity of domestic cattle in East and Southeast Asia in terms of variations in restriction sites and sequences of mitochondrial DNA. Biochem. Genet. 33: 51-60.
11. Kikkawa Y, Takada T, Sutopo, Nomura K, Namikawa T, Yonekawa H and Amano T (2003) Phylogenies using mtDNA and SRY provide evidence for male-mediated introgression in Asian domestic cattle. Anim. Genet. 34: 96-101.
12. Kim I, Min BY and Yoon MH (2000) Micro-geographic genetic subdivision of the striped field mouse (Apodemus agrarius) detected by mitochondrial control region sequences. Korean J. Genetics 22: 101-116.
13. Koichiro T and Tadashi A (1988) Rapid isolation method of animal mitochondrial DNA by the alkaline lysis procedure. Biochemical Genetics 26: 815-810.
14. Kumar SK, Tamura K and Nei M (1994) MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Comput. Appl. Biosci. 10: 189-191.
15. Loftus RT, MacHugh DG and Bradley PM (1994) Evidence for two independent domestications of cattle. Proc. Natl. Acad. Sci. 91: 2757-2761.
16. MacHugh DE, Shriver MD, Loftus RT, Cunningham P and Bradley DG (1997) Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus). Genetics 146: 1071-1086.
17. Mannen H, Tsuji S, Loftus RT and Bradley DG (1998) Mitochondrial DNA variation and evolution of Japanese black cattle (Bos taurus). Genetics 150: 1169-1175.
18. Mannen H, Kohno M, Nagata Y, Tsuji S, Bradley DG, Yeo JS, Nyamsamba D, Zagdsuren Y, Yokohama M, Nomura K and Amano T (2004) Independent mitochondrial origin and historical genetic differentiation in North Eastern Asian cattle. Mol. Phylogenet. Evol. 32: 539-544.
19. nd ed. Common Wealth Agricultural Bureux, Farnham Royal, Bucks, England.
20. Namikawa T (1981) Geographical distribution of bovine hemoglobin-beta (Hbb) alleles and the phylogenetic analysis of cattle in eastern Asia. Z. Tierzuchtg. Zuchthsbiol. 98: 17.
21. Namikawa T, Ito S and Amano T (1984) Genetic relationship and phylogeny of east and southern eastern Asian cattle: Genetic distance and principal component analysis. Z. Tierzuchtg. Zuchthsbiol. 101: 151.
22. Nijman IJ, Otsen M, Verkaar EL, de Ruijter C, Hanekamp E, Ochieng JW, Shamshad S, Rege JE, Hanotte O, Barwegen MW, Sulawati T and Lenstra JA (2003) Hybridization of banteng (Bos javanicus) and zebu (Bos indicus) revealed by mitochondrial DNA, satellite DNA, AFLP and microsatellites. Heredity 90: 10-16.
23. Payne WJA and Hodges J (1997) Tropical Cattle, Origins, Breeds and Breeding Policies. Blackwell Sciences Ltd, Oxford.
24. Tamura K and Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10: 512-526.
25. Thomson JD, Higgins DG and Gibson TJ (1994) CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acid. Res. 22: 4673-4680.
26. Upholt WB and Dawid IB (1977) Mapping of mitochondrial DNA of individual sheep and goats: rapid evolution in the D-loop region. Cell 11: 571-583
27. Walberg MW and Clayton DA (1981) Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids. Res. 9: 5411-5421.
28. th ed. The Benjamin/Cummings Publishing Company, Inc, 454 pp.
29. Wilson AC, Cann RL, Carr SM, George M, Gyllenstein UB, Helmbychowski KM, Higucho RG, Palumbi SR, Prager EM, Sage RD and Stoneking M (1985) Mitochondrial DNA and two perspectives on evolutionary genetics. Biol. J. Linnaean Soc. 26: 375-400.
30. Yu Y, Nie L, He ZO, Wen JK, Jian CS and Zhang YP (1999) Mitochondrial DNA variation in cattle of south China: origin and introgression. Anim. Genet. 30: 245-250.