G and P genotyping of bovine group A rotaviruses in faecal samples of diarrhoeic calves by DIG-labelled probes

Indian Journal of Biotechnology

Volumn 4, Issue 1, 2005, Pages 93-99

  Minakshi, ^a   Prasad, G ^a   Malik, Y ^b   Pandey, R ^a  

^a CCS HARYANA AGRICULTURAL UNIVERSITY   (India)

^b JN Krishi Vishwavidyalaya ^*  (India)

Author keywords

BRV; DIG probes; Dot blot hybridisation; G and P genotyping; RT PCR

Indexed keywords

DIGOXIGENIN;

ANIMAL MODEL; ARTICLE; CATTLE; CONTROLLED STUDY; DIARRHEA; DOT HYBRIDIZATION; EPIDEMIOLOGICAL DATA; FECES ANALYSIS; GENE AMPLIFICATION; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOTYPE; INDIA; NONHUMAN; NUCLEIC ACID HYBRIDIZATION; NUCLEIC ACID PROBE; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; RNA EXTRACTION; ROTAVIRUS; VIRUS INFECTION;

ANIMALIA; BOS TAURUS; BOVINAE; BREDA VIRUS; ROTAVIRUS; ROTAVIRUS A;

EID: 13544266404     PISSN: 09725849     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (50)

1. LeBaron C W, Furutan N P, Lew J F, Allen J R, Gouvea V et al, Viral agents of gastroenteritis-Public health importance and outbreak management, MMWR, 39 (1990) 1-24.
2. Singh A & Pandey R, Molecular biology and vaccinology of mammalian group A rotaviruses, Indian J Microbiol, 30 (1990) 233-236.
3. Gulati B R, Meherchandani S & Pandey R, Electrophoretic typing of the genomic RNA of rotaviruses from diarrhoeic calves, Indian J Virol, 11 (1995) 7-12.
4. Grover Y P, Minakshi, Patnaik D P & Pandey R, Epidemiological studies on bovine rotavirus in diarrhoeic calves at organised dairy farms in Haryana and adjoining areas during 1996-1997, Indian J Comp Microbiol Immunol Infect Dis, 19 (1998) 121-123.
5. Saif L J, Bovine rotavirus, in Diagnostic veterinary microbiology - A practioner's guide, edited by A E Castro & W P Heusehele (Williams & Wilkins, Baltimore) 1991, 126-130.
6. Snodgrass D R, Fitzerald T A, Cambell I, Scott F M M, Browing G F et al, Rotavirus serotypes 6 and 10 predominate in cattle, J Clin Microbiol, 28 (1990) 504-507.
7. Estes M K & Cohen J, Rotavirus gene structure and function, Microbiol Rev, 53 (1989) 410-449.
8. Hoshino Y, Wyatt R G, Greenberg H B, Flores J & Kapikian A Z, Serotypic similarity and diversity of rotavirus of mammalian and avian origin as studied by plaque reduction neutralisation, J Infect Dis, 149 (1984) 694-702.
9. Snodgrass D K, Hoshino Y & Fitzerald T A, Identification of 4 VP4 serological types P serotypes of bovine rotavirus using viral reassortants, J Gen Virol, 73 (1992) 2319-2325.
10. Hoshino Y & Kapikian A Z, Rota virus antigens, Curr Top Microbiol Immunol, 185 (1994) 179-227.
11. Estes M K, Rotavirus and their replication, in Field's virology, 3rd edn, vol V, edited by D M Kniep & P M Howley (Lippincott-Raven Press, Philadephia) 1996, 1625-1655.
12. Taniguchi K, Urasawa T, Morita Y, Greenberg H B & Urasawa S, Direct serotyping of human rotavirus in stools by an enzyme-liked immunosorbent assay using serotype 1-, 2-, 3- and 4-specific monoclonal antibodies to VP7, J Virol, 2 (1987) 2421-2426.
13. Rao C D, Gowda K & Reddy B S Y, Sequence analysis of VP4 and VP7 genes of nontypeable strains identifies a new pair of outer capsid proteins representing novel P and G genotypes in bovine, Virology, 276 (2000) 104-113.
14. Estes M K & Tanaka T, Nucleic acid probes for rotavirus detection and characterization, in DNA probes for infectious diseases, edited by F Tenover (CRC Press Inc., Boca Raton, Philadelphia) 1989, 79-100.
15. Rosen B I, Saif L J, Jackwood D J & Gorziglia M, Hybridisation probes for the differentiation of two serotypes of porcine rotaviruses, Vet Microbiol, 24 (1990) 327-339.
16. Nakagomi O, Nakagomi T, Akatani K & Ikagomi N, Identification of rotavirus genogroups by RNA-RNA hybridisation, Mol Cell Probes, 3 (1989) 251-261.
17. Ohshima A, Takagi T, Nakagomi T, Matsuno S & Nakagomi O, Molecular characterization by RNA-RNA hybridization of serotype 8 human rotavirus with "super short" RNA electropherotype, J Med Virol, 30 (1990) 107-112.
18. Xu L, Harbour D & McCrae M A, The application of polymerase chain reaction to the detection of rotaviruses in faeces, J Gen Virol, 27 (1990) 29-38.
19. Nakagomi O, Oyamada H & Nakagomi T, Experience with serotyping rotavirus strains by reverse transcription and two-step polymerase chain reaction with generic and type-specific primers, Mol Cell Probes, 5 (1991) 285-289.
20. Gouvea V, Ho M S, Glass R, Woods P, Forrester B, Robinson C et al, Serotypes and electropherotypes of human rotavirus in the USA, 1987-1989, J Infect Dis, 162 (1990) 362-367.
21. Wilde J, Eiden J & Yolken R, Removal of inhibitory substances from human faecal samples for detection of group A rotaviruses by reverse transcriptase and polymerase chain reaction, J Clin Microbiol, 28 (1990) 1300-1307.
22. Herring A J, Inglis N F, Ojeh C K, Snodgrass D R & Menzies J D, Rapid diagnosis of rotavirus infection by direct detection of viral nucleic acid in silver stained polyacrylamide gels, J Clin Microbiol, 16 (1982) 473-477.
23. Svensson L, Uhnoo I, Grandien M & Wadell G, Molecular epidemiology of rota virus infections in Upsala, Sweden 1981: Disappearance of a predominant electropherotype, J Med Virol, 18 (1986) 101-111.
24. Gentsch J R, Glass R I, Woods P A, Gouvea V, Gorzigilia M et al, Identification of Group A rotavirus gene 4 types by polymerase chain reaction, J Clin Microbiol, 30 (1992) 1365-1373.
25. rd edn. (Cold Spring Harbor Laboratory Press, New York) 2001, 5.1-5.13.
26. Chomczynski P & Sacchi N, Single step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction, Anal Biochem, 162 (1987) 156-159.
27. Chanock S J, Wenske E A & Fields B N, Human rotaviruses and genomic RNA, J Infect Dis, 148 (1983) 49-50.
28. Flores J, Purcell R H, Perez-Schael I, Wyatt R G, Boeggman E et al, A dot hybridization assay for detection of rotavirus, Lancet, 1 (1983) 555-558.
29. Pande A & Pandey R, Comparison between RNA electropherotyping and nucleic acid hybridization for the detection of rotavirus in faecal samples of diarrhoeic calves, Indian J Anim Sci, 68 (1998) 591-594.
30. Husain M, Seth P & Broor S, Detection of group A rotavirus by reverse transcriptase and polymerase chain reaction in faeces from children with acute gastro-enteritis, Arch Virol, 140 (1995) 1225-1233.
31. Parwani A V, Rosen B I, McCrae M A & Saif L J, Development of cDNA probes or typing group A bovine rotaviruses on the basis of VP4 specificity, J Clin Microbiol, 30 (1992) 2717-2721.
32. Parwani A V, Rosen B I, Flores J, McCrae M A, Gorziglia M et al, Detection and differentiation of bovine Group A rotavirus serotypes using polymerase chain reaction-generated probes to the VP7 gene, J Vet Diagn Invest, 4 (1992) 148-158.
33. Redmond D L, Inglis N F, Fitzgerald T A, Snodgrass D R & Herring A J, A liquid-hybridization method for typing the VP4 and VP7 gene of bovine rotaviruses, J Virol Methods, 39 (1992) 165-177.
34. Parwani A V, Hussein H A, Rosen B I, Lucchelli A, Navarro L et al, characterisation of field strains of Group A bovine rotaviruses by using polymerase chain reaction-generated G and P type-specific cDNA probes, J Clin Microbiol, 31 (1993) 2010-2015.
35. Munoz M, Parwani A V, Lucchelli A, Tsunemitsu H & Saif L J, Detection of serotype G6 rotavirus in bovine field samples using a non radioactive PCR derived cDNA probe, J Vet Diagn Invest, 1 (1995) 546-548.
36. Nirdnoy W, Sethabutr O, Sakulkaipeara T, Harikul S, Hoge C W et al, Typing of human Group A rotavirus with alkaline phosphatase-labelled probes or a monoclonal enzyme immunoassay in unfrozen stools of children with diarrhoea in Bangkok, J Med Virol, 45 (1995) 117-120.
37. Alfieri A A, Leite J P, Nakagomi O, Kaga E, Woods P A, Characterization of human rotavirus genotype P [8]G5 from Brazil by probe-hybridization and sequence, Arch Virol, 141 (1996) 2353-2364.
38. Gorrell R J & Palombo E A, Use of non-radioactive probes for VP4 typing of human rotaviruses, J Virol Methods, 61 (1996) 59-64.
39. Leite J P, Alfieri A A, Woods P A, Glass R L & Gentsch J R, Rotavirus G and P types circulating in Brazil, characterisation by RT-PCR, probe hybridization and sequence analysis, Arch Virol, 141 (1996) 2365-2374.
40. Masendycz P J, Palombo E A, Gorrell R J & Bishop R F, Comparison of enzyme immunoassay PCR and type specific cDNA probe technique for identification of group A rotavirus gene 4 types (P types), J Clin Microbiol, 35 (1997) 3104-3108.
41. de Verdier Klingerberg K, Nilsson M & Svensson L, Rotavirus G type restriction persistence and herd type specificity in Swedish cattle herds, Clin Diagn Lab Immunol, 6 (1999) 181-185.
42. Taniguchi K, Urasawa T, Pongsuwanna Y, Choonthanon M, Jayavasu C et al, Molecular and antigenic analysis of serotype 8 and 10 of bovine rotavirus in Thailand, J Gen Virol, 72 (1991) 2929-2937.
43. Woode G N, Kelso N E, Sympson T F, Gaul S K, Evans L E et al, Antigenic relationship among some bovine rotaviruses: serum neutralization and cross protection in gnotobiotic calves, J Clin Microbial, 18 (1983) 358-364.
44. Bellinzoni R, Blachall J O, Mattion N, Estes M K, Snodgrass D R et al, Serological characterization of bovine rotaviruses isolated from dairy and beef herds in Argentina, J Clin Microbiol, 28 (1989) 2619-2623.
45. He K W, Lin J H, Ding Z D, He J H, Jianj J Y et al, Serotyping and antigenic comparison of some animal rotaviruses isolated in China, Zentralbl Vetrinaermed Reihe B, 39 (1992) 299-300.
46. Suzuki Y, Sanekata T, Sato M, Tajima K, Matsuda Y et al, Relative frequencies of G (VP7) and P (VP4) serotypes determined by polymerase chain reaction assays among Japanese bovine rotaviruses isolated in cell culture, J Clin Microbiol, 31 (1993) 3046-3049.
47. Chang K O, Parwani A V & Saif L J, The characterization of VP7 (G type) and VP4 (P type) genes of bovine group A rotavruses from field samples using RT-PCR and RFLP analysis, Arch Virol, 141 (1996) 1727-1739.
48. Chang K O, Parwani A V & Saif L J, Comparative sequence analysis of the VP7 genes of G6 G8 and G10 bovine group A rotaviruses and further characterisation of G6 subtypes, Arch Virol, 145 (2000) 725-737.
49. Ishizaki H, Sakai T, Shirahata T, Taniguchi K, Urasawa T et al, The distribution of G and P types within isolates of bovine rotavirus in Japan, Vet Microbiol, 48 (1996) 367-372.
50. Nakagomi T, Nakagomi O b Streecket H J, Bovine rotavirus strain 678 possesses VP4 of serotype P7 (5) specificity, Arch Virol, 142 (1997) 1255-1262.