Efficiency of microsatellite enrichment in Prosopis chilensis using magnetic capture

Plant Molecular Biology Reporter

Volumn 22, Issue 3, 2004, Pages 251-258

  Mottura, Martín C ^a,b   Gailing, Oliver ^a   Verga, Aníbal R ^b   Finkeldey, Reiner ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b INSTITUTO NACIONAL DE TECNOLOGÍA AGROPECUARIA INTA   (Argentina)

Author keywords

Magnetic capture; Microsatellite enrichment; Microsatellites; Molecular marker; Prosopis chilensis; Simple sequence repeat

Indexed keywords

FABACEAE; PROSOPIS; PROSOPIS CHILENSIS;

EID: 13444291409     PISSN: 07359640     EISSN: 07359640     Source Type: Journal    
DOI: 10.1007/BF02773135     Document Type: Review

References (20)

1. Cordeiro GM, Maguire TL, Edwards KJ, and Henry RJ (1999) Optimization of a microsatellite enrichment technique in Saccharum spp. Plant Mol Biol Rep 17: 225-229.
2. Edwards KJ, Barker JHA, Daly A, Jones C, and Karp A (1996) Microsatellite libraries enriched for several microsatellite sequences in plants. BioTechniques 20: 758-760.
3. Fischer D and Bachman K (1998) Microsatellite enrichment in organisms with large genomes (Allium cepa L.). BioTechniques 24: 796-802.
4. Hamilton MB, Pincus EL, Di Fiore A, and Fleischer RC (1999) Universal linker and ligation procedures for construction of genomic DNA libraries enriched for microsatellites. BioTechniques 27: 500-507.
5. Jakse J and Javornik B (2001) High throughput isolation of microsatellites in hop (Humulus lupulus L.). Plant Mol Biol Rep 19: 217-226.
6. Jurka J and Pethiyagoda C (1995) Simple repetitive DNA sequences from primates: compilation and analysis. J Mol Evol 40: 120-126.
7. Karagyozov L, Kalcheva ID, and Chapman VM (1993) Construction of random smallinsert genomic libraries highly enriched for simple sequence repeats. Nucleic Acids Res 21: 3911-3912.
8. Kijas JMH, Fowler JCS, Garbett CA, and Thomas MR (1994) Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles. BioTechniques 16: 657-662.
9. Litt M and Luty JA (1989) A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am J Hum Genet 44: 397-401.
10. Marchuk D, Drumm M, Saulino A, and Collins FS (1990) Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products. Nucleic Acids Res 19: 1154.
11. Morgante M, Hanafey M, and Powell W (2002) Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat Genet 30: 194-200.
12. Paetkau D (1999) Microsatellites obtained using strand extension: an enrichment protocol. BioTechniques 26: 690-697.
13. Pandey M, Gailing O, Fischer D, Hattemer HH, and Finkeldey R (2004) Characterization of microsatellite markers in sycamore (Acer pseudoplatanus L.). Mol Ecol Notes 4: 253-255.
14. Pearson WR and Lipman DJ (1988) Improved tools for biological sequence comparison. Proc Acad Nat Sci USA 85: 2444-2448.
15. Pearson WR (1990) Rapid and sensitive sequence comparison with FASTP and FASTA. Meth Enzymol 183: 63-98.
16. Rodrigues NB, LoVerde PT, Romanha AJ, and Oliveira G (2002) Characterization of new Schistosoma mansoni microsatellite loci in sequences obtained from public DNA database and microsatellite enriched genomic libraries. Mem Inst Oswaldo Cruz, Rio de Janerio, vol 97 (Suppl I): 71-75.
17. Saneyoshi U, Yoshihiko T, and Izumi W (2003) Development of microsatellite markers in Primula sieboldii E. Morren, a threatened Japanese perennial herb. Conserv Genet 4: 809-811.
18. Tautz D (1989) Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Res 17: 6463-6471.
19. Watterson GA (1978) The homozygosity test of neutrality. Genetics 88: 405-417.
20. Weber JL and May PE (1989) Abundant class of human DNA polymorphism which can be typed using the polymerase chain reaction. Am J Hum Genet 44: 388-396.