Rhizobium etli and Rhizobium gallicum nodulate Phaseolus vulgaris in Egyptian soils and display cultivar-dependent symbiotic efficiency

Symbiosis

Volumn 38, Issue 2, 2005, Pages 145-161

  Shamseldin, Abdelaal Ali Yousef ^a   Vinuesa, Pablo ^b,c   Thierfelder, Heidemarie ^b   Werner, Dietrich ^b  

^a Universities and Research centers District   (Egypt)

^b PHILIPPS UNIVERSITY MARBURG   (Germany)

^c INSTITUTO DE CIENCIAS FÍSICAS   (Mexico)

Author keywords

Egypt; Molecular characterisation; Phaseolus vulgaris; Rhizobia

Indexed keywords

RHIZOBACTERIUM;

AGROBACTERIUM; AGROBACTERIUM TUMEFACIENS; PHASEOLUS (ANGIOSPERM); PHASEOLUS VULGARIS; RHIZOBIACEAE; RHIZOBIUM; RHIZOBIUM ETLI; RHIZOBIUM GALLICUM;

EID: 13444269354     PISSN: 03345114     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (47)

1. Amarger, N., Macheret, V., and Laguerre, G. 1997. Rhizobium gallicum sp. nov. and Rhizobium giardnii sp. nov., from Phaseolus vulgaris nodules. Journal of Systematic Bacteriology 47: 996-1006.
2. Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Smit, J.A., Seidman, J.C., and Struhl, K.S., eds. 1994. Current Protocols in Molecular Biology, Section 2.4, John Wiley and Sons, New York.
3. Bender, G.L. and Rolfe, B.G. 1985. A rapid assay for the Parasponia-Rhizobium symbioses. Plant Science Letters 38: 135-140.
4. Buttery, B.R., Park, S.J., and Findlay, W.J. 1987. Growth and yield of white bean (Phaseolus vulgaris L.) in response to nitrogen, phosphorus and potassium fertilizer and to inoculation with Rhizobium. Canadian Journal of Plant Science 67: 425-432.
5. Caballero-Mellado, J. and Martinze-Romero, E. 1999. Soil fertilization limits the genetic diversity of Rhizobium in bean nodules. Symbiosis 26: 111-121.
6. Castro-Sowinski, S., Carrera, I., Catalan, A.I., Coll, J., and Martinez-Drets, G. 2002. Occurrence, diversity and effectiveness of mid-acid tolerant alfalfa nodulating rhizobia in Uruguay. Symbiosis 32: 105-118.
7. De Lajudie, P., Willems, A., Nick, G., Mohamed, S.H., Torck, U., Coopman, R., Filali-Maltouf, A., Kersters, K., Dreyfus, B., Lindstrom, K., and Gillis, M. 1999. Agrobacterium bv. 1 strains isolated from nodules of tropical legumes. Systematic and Applied Microbiology 22: 119-132.
8. Diouf, A., de Lajudie, P., Neyra, M., Kersters, K., Gillis, M., Martinez-Romero E., and Gueye, M. 2000. Polyphasic characterization of rhizobia that nodulate Phaseolus vulgaris in West Africa (Senegal and Gambia). Journal of Systematic and Evolutionary Microbiology 50: 159-170.
9. Drevon, J.J., Abdelly, C., Amarger, N., Aouani, E.A., Aurag, J., Gherbi, H., Jebara, M., Lluch, C., Payre, H., Schump, O., Soussi, M., Sifi, B., and Trabelsi, M. 2001. An interdisciplinary research strategy to improve symbiotic nitrogen fixation and yield of common bean (Phaseolus vulgaris) in salinised areas of the Mediterranean basin. Journal of Biotechnology 91: 257-268.
10. FAOSTAT 2001. Internet http://apps.fao.org.
11. Flores, M., Mavingui, P., Perret, X., Broughton, W.J., Romero, D., Hernandez, G., Davila, G., and Palacios, R. 2000. Prediction, identification, and artificial selection of DNA rearrangements in Rhizobium: towards a natural genomic design. Proceedings of the National Academy of Sciences of USA 97: 9138-9143.
12. Girard, M.L., Flores, M., Brom, S., Romero, D., Palacios, R., and Davila, G. 1991. Structural complexity of the symbiotic plasmid of Rhizobium leguminosarum bv. phaseoli. Journal of Bacteriology 173: 2411-2419.
13. Graham, P.H. 1981. Some problems of nodulation and symbiotic nitrogen fixation in Phaseolus vulgaris L.: A review. Field Crops Research 4: 93-112.
14. Hall, T.A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98NT. Nucleic Acids Symposium Series 41: 95-98.
15. Hameed, S., Sumera, S., Malik, K.A., Zafar, Y., and Hafeez, F.Y. 2004. Rhizobium, Bradyrhizobium and Agrobacterium strains isolated from cultivated legumes. Biology and Fertility of Soils 39: 179-185.
16. Hernandez-Lucas, I., Segovia, L., Martìnez-Romero, E., and Pueppke, S.G. 1995. Phylogenetic relationship and host range of Rhizobium spp. that nodulate Phaseolus vulgaris L. Applied and Environmental Microbiology 61: 2775-2779.
17. Hungria, M. and Araujo, R.S. 1995. Relate da V1 reuniao de laborator-ios para recomendacaode estirps de Rhizobium e Bradyrhizobium. In: Microbiologia da Sola. Desafios Para o Seculo xx1. M. Hungria, E.L. Balota, A. Colozzi-Filho and D.S. Andrade, eds. IAPAR/EMBRAPA-CNPSO, Londrina, Brazil, pp.476-489.
18. Jordan, D.C. 1984. Rhizobiacea Conn. In: Bergey's Manual of Systematic Bacteriology. N.R. Krieg and J.G. Holt, eds. Williams and Wilkins, Baltimore, USA, pp. 235-244.
19. Kratzsch, G. 1999. Trockenspeisebohne (Buschbohne). In: Handbuch des Pflanzenbaues. Band 3. Knollen- und Wurzelfrüchte, Körner- und Futterleguminosen. E.R. Keller, H. Hanus und K.-U. Heyland, Hrgs. Verlag Eugen Ulmer, Stuttgart, S. 711-727.
20. Kumar, S., Tamura, K., Jakobsen, I.B., and Nei, M. 2001. MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
21. Kuykendall, D. and Hashem, M.F. 1994. Plasmid DNA content of several agronomically important Rhizobium species that nodulate alfalfa, berseem clover or leucaena. Plant and Soil 161: 181-188.
22. Laguerre, G., Nour, S.M., Macheret, V., Sanjuan, J., Drouin, P., and Amarger, N. 2001. Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Ph. vulgaris symbionts. Microbiology 147: 981-993.
23. Maidak, B.L., Cole, J. R., Lilburn, T.G., Parker, C.T. Jr, Saxman, P.R., Farris, R.J., Garrity, G.M., Olsen, G.J., Schmidt, T.M., and Tiedje, J.M. 2001. The RDPII (Ribosomal Database project). Nucleic Acids Research 29: 173-174.
24. Martinez-Romero, E. 2003. Diversity of Rhizobium-Phaseolus vulgaris symbiosis: overview and perspectives. Plant and Soil 252: 11-23.
25. Martinez-Romero, E., Segovia, L., Mercante, F.M., Franco, A.A., Graham, P.H., and Pardo, M.A. 1991. Rhizobium tropici, a novel species nodulating Phaseolus vulgaris L. beans and Leucaena sp. trees. Journal of Systematic Bacteriology 41: 417-426.
26. Martinez, E., Palacios, R., and Sanchez, F. 1987. Nitrogen-fixing nodules induced by Agrobacterium tumefaciens harboring Rhizobium phaseoli plasmids. Journal of Bacteriology 169: 2828-2834.
27. Mhamdi, R., Laguerre, G., Aouani, M.E., Mars, M., and Amarger, N. 2002. Different species and symbiotic genotypes of field rhizobia can nodulate Phaseolus vulgaris in Tunisian soils. FEMS Microbiology Ecology 41: 77-84.
28. Mhamdi, R., Jebara, M., Aouani, M.E., Ghrir, R., and Mars, M. 1999. Genotypic diversity and symbiotic effectiveness of rhizobia isolated from root nodules of Phaseolus vulgaris L. grown in Tunisian soils. Biology and Fertility of Soils 28: 313-320.
29. Michiels, J., Dombrecht, B., Vermeiren, N., Xi, C., Luyten, E., and Vanderleyden, J. 1998. Phaseolus vulgaris is a non-selective host for nodulation. FEMS Microbiology Ecology 26: 193-205.
30. Robert, F.M. and Schmidt, E.L. 1983. Population changes and persistence of R. phaseoli in soils and rhizospheres. Applied and Environmental Microbiology 54: 550-556.
31. Sanger, F., Nicklen, S., and Coulson, A.R. 1977. DNA sequencing with chain terminating inhibitors. Proceedings of the National Academy of Sciences USA 74: 5463-5467.
32. Sawada, H., Kuykendall, L.D., and Young, J.M. 2003. Changing concepts in the systematics of bacterial nitrogen-fixing legume symbionts. Journal of General Applied Microbiology 49: 155-179.
33. Segovia, L., Young, J.P.W., and Martinez-Romero, E. 1993. Reclassification of American Rhizobium leguminosarum biovar phaseoli type 1 strains as R. etli sp. nov. Journal of Systematic Bacteriology 43: 374-377.
34. Sendecor, C.W. and Cochran, W.G. 1978. Statistical Methods, 6th, Ed. Oxford and FBH Publishing Co. Calcutta, India.
35. Silva, C., Vinuesa, P., Eguiarte, L.E., Esperanza-Martinez, R., and Souza, V. 2003. Rhizobium etli and Rhizobium gallicum nodulate common bean (Phaseolus vulgaris) in a traditionally managed milpa plot in Mexico, population genetics and biographic implications. Applied and Environmental Microbiology 69: 884-893.
36. Silva, C., Eguiarte, L.E., and Souza, V. 1999. Reticulated and epidemic population genetic structure of Rhizobium etli biovar phaseoli in a traditionally managed locality in Mexico. Molecular Ecology 8: 277-287.
37. Somasegaran, P. and Hoben, H.J. 1985. Hand Book for Rhizobia - Methods in Legume Rhizobium Technology. Springer-Verlag, Heidelberg, Germany.
38. Temprano, F.J., Santamaria, C., Daza, A., Leidi, E.O., and Rodriguez-Navarro, D.N. 1997. In: Tolernacia Simbiotica a Nitrato de distinats Leguminosas. R. Sarmiento, E.O. Leidi and A. Troncoso, eds. Nutricion de Mineral de las Plantas en la Agricultura Sostenible. Consejeria de Agriculturay Pesca, Junta de Andalucia, Sevilla, pp. 41-47.
39. Terefework, Z., Nick, G., Suomalainen, S., Paulin, L., and Lindström, K. 1998. Phylogeney of Rhizobium galegae with respect to other rhizobia and agrobacteria. Journal of Systematic Bacteriology 48: 349-356.
40. Ueda, K., Seki, T., Kudo, T., Yoshida, T., and Kataoka, M. 1999. Two distinct mechanisms cause the heterogeneity of 16S rRNA. Journal of Bacteriology 181: 78-82.
41. Vinuesa, P., Rademaker, J.L.W., de Bruijn, F.J., and Werner, D. 1998. Genotypic characterization of Bradyrhizobium strains nodulating endemic woody legumes of the Canary Islands by PCR restriction fragment length polymorphism analysis of genes coding (16S rDNA) and 16S-23S rDNA intergenic spacers, repetitive extragenic palindromic, PCR genomic finger printing and partial 16S rDNA sequencing. Applied and Environmental Microbiology 64: 2096-2104.
42. Wegener, C., Schröder, S., Kapp, D., Pühler, A., Segundo Lopez, E., Martinez-Abarca, F., Toro, N., Del Papa, M.F., Balagué, L.J., Lagares, A., Martinez-Drets, G., and Niehaus, K. 2001. Genetic uniformity and symbiotic properties of acid-tolerant alfalfa-nodulating rhizobia isolated from dispersed locations throughout Argentina. Symbiosis 30: 141-162.
43. Weisburg, W.G., Barns, S.M., Pelletier, D.A., and Lane, D.J. 1991. 16S ribosomal DNA amplification for phylogenetic study. Journal of Bacteriology 173: 697-703.
44. Werner, D. 1992. Symbioses of Plants and Microbes. Chapman and Hall, London, New York, pp. 130-131.
45. Werner, D. 1999. II Körnerleguminosen: Biologische Stickstoff-Fixierung. In: Handbuch des Pflanzenbaues, Band 3. Knollen- und Wurzelfrüchte, Körner- und Futterleguminosen. E.R. Keller, H. Hanus und K.-U. Heyland, Hrgs. Verlag Eugen Ulmer, Stuttgart, S. 554-562.
46. Werner, D., Wilcockson, J.K., and Zimmermann, E. 1975. Adsorption and selection of rhizobia by ion exchange papers. Archives of Microbiology 105: 27-32.
47. Xia, X. and Xie, Z. 2001. DAMBE:software package for data analysis in molecular biology and evolution. Journal of Heredity 92: 371-373.