메뉴 건너뛰기




Volumn 345, Issue 1 SPEC. ISS., 2005, Pages 35-43

Carotenoid biosynthetic pathway: Molecular phylogenies and evolutionary behavior of crt genes in eubacteria

Author keywords

Carotenoid regulatory genes; Gene duplication; Lateral gene transfer; Nonsynonymous nucleotide substitutions (dN); Synonymous nucleotide substitutions (dS)

Indexed keywords

CAROTENOID; ISOPRENOID; LYCOPENE; NUCLEOTIDE; PHYTOENE; SYNTHETIC DNA; UNCLASSIFIED DRUG; XANTHOPHYLL;

EID: 13444263680     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.11.038     Document Type: Article
Times cited : (35)

References (36)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • S.F. Altschul Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res. 25 1997 3389 3402
    • (1997) Nucleic Acids Res. , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 2
    • 0345129949 scopus 로고
    • Genetic analysis and regulation of carotenoid biosynthesis: Structure and function of the crt genes and gene products
    • R.E. Blankenship M.T. Madigan C.E. Bauer Advances in photosynthesis Kluwer Academic Publishers Dordrecht, The Netherlands
    • G.A. Armstrong Genetic analysis and regulation of carotenoid biosynthesis: structure and function of the crt genes and gene products R.E. Blankenship M.T. Madigan C.E. Bauer Advances in photosynthesis Anoxygenic Photosynthetic Bacteria vol. 2 1995 Kluwer Academic Publishers Dordrecht, The Netherlands 1135 1157
    • (1995) Anoxygenic Photosynthetic Bacteria , vol.2 , pp. 1135-1157
    • Armstrong, G.A.1
  • 3
    • 0030818333 scopus 로고    scopus 로고
    • Genetics of eubacterial carotenoid biosynthesis: A colorful tale
    • G.A. Armstrong Genetics of eubacterial carotenoid biosynthesis: a colorful tale Annu. Rev. Microbiol. 51 1997 629 659
    • (1997) Annu. Rev. Microbiol. , vol.51 , pp. 629-659
    • Armstrong, G.A.1
  • 4
    • 9844251782 scopus 로고    scopus 로고
    • Genetics, biochemistry and regulation of carotenoid biosynthesis
    • D.E. Cane Comprehensive natural products chemistry Elsevier Oxford
    • G.A. Armstrong Genetics, biochemistry and regulation of carotenoid biosynthesis D.E Cane Comprehensive natural products chemistry Isoprenoids Including Carotenoids and Steroids vol. 2 1997 Elsevier Oxford
    • (1997) Isoprenoids Including Carotenoids and Steroids , vol.2
    • Armstrong, G.A.1
  • 5
    • 0025632919 scopus 로고
    • Conserved enzymes mediate the early reactions of carotenoid biosynthesis in nonphotosynthetic and photosynthetic prokaryotes
    • G.A. Armstrong, M. Alberti, and J.E. Hearst Conserved enzymes mediate the early reactions of carotenoid biosynthesis in nonphotosynthetic and photosynthetic prokaryotes Proc. Natl. Acad. Sci. 87 1990 9975 9979
    • (1990) Proc. Natl. Acad. Sci. , vol.87 , pp. 9975-9979
    • Armstrong, G.A.1    Alberti, M.2    Hearst, J.E.3
  • 7
    • 0001887923 scopus 로고    scopus 로고
    • Overview of carotenoid biosynthesis
    • G. Britton Birkhauser Basel
    • G. Britton Overview of carotenoid biosynthesis G. Britton Carotenoids: biosynthesis and metabolism 1998 Birkhauser Basel 13 147
    • (1998) Carotenoids: Biosynthesis and Metabolism , pp. 13-147
    • Britton, G.1
  • 8
    • 0027236776 scopus 로고
    • Molecular and biochemical characterization of herbicide resistant mutants of cyanobacteria reveals that phytoene desaturation is a rate-limiting step in carotenoid biosynthesis
    • D. Chemovitz, G. Sandman, and J. Hirschberg Molecular and biochemical characterization of herbicide resistant mutants of cyanobacteria reveals that phytoene desaturation is a rate-limiting step in carotenoid biosynthesis J. Biol. Chem. 268 1993 17348 17353
    • (1993) J. Biol. Chem. , vol.268 , pp. 17348-17353
    • Chemovitz, D.1    Sandman, G.2    Hirschberg, J.3
  • 9
    • 0023423375 scopus 로고
    • The derivation and interpretation of control coefficients
    • B. Crabtree, and E.A. Newsholme The derivation and interpretation of control coefficients Biochem. J. 247 1987 113 120
    • (1987) Biochem. J. , vol.247 , pp. 113-120
    • Crabtree, B.1    Newsholme, E.A.2
  • 10
    • 0034087474 scopus 로고    scopus 로고
    • Domain structure, oligomeric state and mutational analysis of PpsR, the Rhodobacter sphaeroides repressor of photosystem gene expression
    • M. Gomelsky, I.M. Horne, H.J. Lee, J.M. Pemberton, A.G. McEwan, and S. Kaplan Domain structure, oligomeric state and mutational analysis of PpsR, the Rhodobacter sphaeroides repressor of photosystem gene expression J. Bacteriol. 182 2000 2253 2261
    • (2000) J. Bacteriol. , vol.182 , pp. 2253-2261
    • Gomelsky, M.1    Horne, I.M.2    Lee, H.J.3    Pemberton, J.M.4    McEwan, A.G.5    Kaplan, S.6
  • 11
    • 0015085774 scopus 로고
    • Biosynthesis of carotenoids and plant triterpenes: The fifth CIBA Medal lecture
    • T.W. Goodwin Biosynthesis of carotenoids and plant triterpenes: the fifth CIBA Medal lecture Biochem. J. 123 1971 293 329
    • (1971) Biochem. J. , vol.123 , pp. 293-329
    • Goodwin, T.W.1
  • 13
    • 0034043253 scopus 로고    scopus 로고
    • Isolation and characterization of canthaxanthin biosynthesis genes from the photosynthetic bacterium Bradyrhizobium sp. strain ORS278
    • L. Hannibal Isolation and characterization of canthaxanthin biosynthesis genes from the photosynthetic bacterium Bradyrhizobium sp. strain ORS278 J. Bacteriol. 182 2000 3850 3853
    • (2000) J. Bacteriol. , vol.182 , pp. 3850-3853
    • Hannibal, L.1
  • 15
    • 0002583153 scopus 로고
    • Genetics of regulation and pathway of synthesis of carotenoids
    • M. Dworkin D. Kaiser
    • D.A Hodgson, and F.J. Murillo Genetics of regulation and pathway of synthesis of carotenoids M. Dworkin D. Kaiser Myxobacteria vol. II 1993 157 181
    • (1993) Myxobacteria , vol.2 , pp. 157-181
    • Hodgson, D.A.1    Murillo, F.J.2
  • 16
    • 0029360424 scopus 로고
    • Metabolism of cyclic carotenoids; A model for the alteration of this biosynthetic pathway in Capsicum anuum chromoplasts
    • P. Hugueney Metabolism of cyclic carotenoids; a model for the alteration of this biosynthetic pathway in Capsicum anuum chromoplasts Plant J. 8 1995 417 424
    • (1995) Plant J. , vol.8 , pp. 417-424
    • Hugueney, P.1
  • 17
    • 0034471456 scopus 로고    scopus 로고
    • Molecular evolution of lycopene cyclases involved in the formation of carotenoids with ionone end groups
    • P. Krubasik, and G. Sandmann Molecular evolution of lycopene cyclases involved in the formation of carotenoids with ionone end groups Biochem. Soc. Trans. 28 2000 806 810
    • (2000) Biochem. Soc. Trans. , vol.28 , pp. 806-810
    • Krubasik, P.1    Sandmann, G.2
  • 19
    • 0033949132 scopus 로고    scopus 로고
    • The non-mevalonate isoprenoid biosynthesis of plants as a test system for new herbicides and drugs against pathogenic bacteria and the malaria parasite
    • H.K. Lichtenthaler, J. Zeidler, J. Schwender, and C. Müller The non-mevalonate isoprenoid biosynthesis of plants as a test system for new herbicides and drugs against pathogenic bacteria and the malaria parasite Z. Naturforsch. 55 2000 305 313
    • (2000) Z. Naturforsch. , vol.55 , pp. 305-313
    • Lichtenthaler, H.K.1    Zeidler, J.2    Schwender, J.3    Müller, C.4
  • 20
    • 0030902310 scopus 로고    scopus 로고
    • Cloning, sequencing and expressing the carotenoid biosynthesis genes, lycopene cyclase and phytoene desaturase, from the aerobic photosynthetic bacterium Erythrobacter longus sp. strain Och101 in Escherichia coli
    • H. Matsumura, H. Takeyama, E. Kusakabe, J.G. Burgess, and T. Matsunaga Cloning, sequencing and expressing the carotenoid biosynthesis genes, lycopene cyclase and phytoene desaturase, from the aerobic photosynthetic bacterium Erythrobacter longus sp. strain Och101 in Escherichia coli Gene 189 1997 169 174
    • (1997) Gene , vol.189 , pp. 169-174
    • Matsumura, H.1    Takeyama, H.2    Kusakabe, E.3    Burgess, J.G.4    Matsunaga, T.5
  • 21
    • 0022507362 scopus 로고
    • Simple method of estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • M. Nei, and T. Gzojobori Simple method of estimating the numbers of synonymous and nonsynonymous nucleotide substitutions Mol. Biol. Evol. 3 1986 418 426
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gzojobori, T.2
  • 22
    • 0029186920 scopus 로고
    • The colorful, fascinating world of the carotenoids: Important physiologic modulators
    • J.A. Olson, and N.I. Krinsky The colorful, fascinating world of the carotenoids: important physiologic modulators FASEB J. 9 1995 1547 1550
    • (1995) FASEB J. , vol.9 , pp. 1547-1550
    • Olson, J.A.1    Krinsky, N.I.2
  • 23
    • 0031888937 scopus 로고    scopus 로고
    • Regulation of photosynthetic gene expression in purple bacteria
    • J.M. Pemberton, I. Horne, and A.G. McEwan Regulation of photosynthetic gene expression in purple bacteria Microbiology 144 1998 267 278
    • (1998) Microbiology , vol.144 , pp. 267-278
    • Pemberton, J.M.1    Horne, I.2    McEwan, A.G.3
  • 24
    • 0028999161 scopus 로고
    • Characterization of an aerobic repressor that coordinately regulates bacteriochlororphyll, carotenoid, and light harvesting: II. Expression in Rhododbacter capsulatus
    • S.N. Ponnampalam, J.J. Buggy, and C.E. Bauer Characterization of an aerobic repressor that coordinately regulates bacteriochlororphyll, carotenoid, and light harvesting: II. Expression in Rhododbacter capsulatus J. Bacteriol. 177 1995 2990 2997
    • (1995) J. Bacteriol. , vol.177 , pp. 2990-2997
    • Ponnampalam, S.N.1    Buggy, J.J.2    Bauer, C.E.3
  • 25
    • 0027999783 scopus 로고
    • Molecular evolution of the plant R regulatory gene family
    • M.D. Purugganan, and S.R. Wessler Molecular evolution of the plant R regulatory gene family Genetics 138 1994 849 854
    • (1994) Genetics , vol.138 , pp. 849-854
    • Purugganan, M.D.1    Wessler, S.R.2
  • 26
    • 0032999582 scopus 로고    scopus 로고
    • Patterns of evolutionary rate variation among genes of the Anthocyanin biosynthetic pathway
    • M.D. Rausher, R.E. Miller, and P. Tiffin Patterns of evolutionary rate variation among genes of the Anthocyanin biosynthetic pathway Mol. Biol. Evol. 16 2 1999 266 274
    • (1999) Mol. Biol. Evol. , vol.16 , Issue.2 , pp. 266-274
    • Rausher, M.D.1    Miller, R.E.2    Tiffin, P.3
  • 27
    • 0033213706 scopus 로고    scopus 로고
    • The discovery of a mevalonate-independent pathway for isoprenoid biosynthesis in bacteria, algae and higher plants
    • M. Rhomus The discovery of a mevalonate-independent pathway for isoprenoid biosynthesis in bacteria, algae and higher plants Nat. Prod. Rep. 16 1999 565 574
    • (1999) Nat. Prod. Rep. , vol.16 , pp. 565-574
    • Rhomus, M.1
  • 28
    • 0023375195 scopus 로고
    • The neighbor-joining method: New method for constructing phylogenetic trees
    • N. Saitou, and M. Nei The neighbor-joining method: new method for constructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 85007261930 scopus 로고
    • Phytoene desaturases: Genes, enzymes and phylogenetic aspects
    • G. Sandmann Phytoene desaturases: genes, enzymes and phylogenetic aspects J. Plant Physiol. 143 1994 444 447
    • (1994) J. Plant Physiol. , vol.143 , pp. 444-447
    • Sandmann, G.1
  • 30
    • 0036896020 scopus 로고    scopus 로고
    • Molecular evolution of carotenoid biosynthesis from bacteria to plants
    • G. Sandmann Molecular evolution of carotenoid biosynthesis from bacteria to plants Physiol. Plant. 116 2002 431 572
    • (2002) Physiol. Plant. , vol.116 , pp. 431-572
    • Sandmann, G.1
  • 31
    • 0026638165 scopus 로고
    • The crtE gene in Erwinia herbicola encodes geranylgeranyl diphosphate synthase
    • K.M. Shivanand, J.E. Hearst, and C.D. Poulter The crtE gene in Erwinia herbicola encodes geranylgeranyl diphosphate synthase Proc. Natl. Acad. Sci. 89 1992 6761 6764
    • (1992) Proc. Natl. Acad. Sci. , vol.89 , pp. 6761-6764
    • Shivanand, K.M.1    Hearst, J.E.2    Poulter, C.D.3
  • 32
    • 0038029673 scopus 로고    scopus 로고
    • Heterologous expression, purification, and enzymatic characterization of the acyclic carotenoid 1,2-hydratase from Rubrivivax gelatinosus
    • S. Steiger, A. Mazet, and G. Sandmann Heterologous expression, purification, and enzymatic characterization of the acyclic carotenoid 1,2-hydratase from Rubrivivax gelatinosus Arch. Biochem. Biophys. 414 2003 51 58
    • (2003) Arch. Biochem. Biophys. , vol.414 , pp. 51-58
    • Steiger, S.1    Mazet, A.2    Sandmann, G.3
  • 33
    • 0032990441 scopus 로고    scopus 로고
    • PAS domains: Internal sensors of oxygen, redox potential, and light
    • B.L. Taylor, and I.B. Zhulin PAS domains: internal sensors of oxygen, redox potential, and light Microbiol. Mol. Biol. Rev. 63 1999 479 506
    • (1999) Microbiol. Mol. Biol. Rev. , vol.63 , pp. 479-506
    • Taylor, B.L.1    Zhulin, I.B.2
  • 34
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice
    • J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 35
    • 0034213794 scopus 로고    scopus 로고
    • Structural and functional analysis of the gene cluster encoding carotenoid biosynthesis in Mycobacterium aurum A+
    • M. Viveiros, P. Krubasik, G. Sandmann, and M. Houssaini-Iraquii Structural and functional analysis of the gene cluster encoding carotenoid biosynthesis in Mycobacterium aurum A+ FEMS Microbiol. Lett. 187 2000 95 101
    • (2000) FEMS Microbiol. Lett. , vol.187 , pp. 95-101
    • Viveiros, M.1    Krubasik, P.2    Sandmann, G.3    Houssaini-Iraquii, M.4
  • 36
    • 0029096540 scopus 로고
    • A sensory transducer homologous to the mammalian peripheral-type benzodiazepine receptor regulates photosynthetic membrane complex formation in Rhodobacter sphaeroides
    • A.A. Yeliseev, and S. Kaplan A sensory transducer homologous to the mammalian peripheral-type benzodiazepine receptor regulates photosynthetic membrane complex formation in Rhodobacter sphaeroides J. Biol. Chem. 270 1995 21167 21175
    • (1995) J. Biol. Chem. , vol.270 , pp. 21167-21175
    • Yeliseev, A.A.1    Kaplan, S.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.